-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1840

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 226, 307
Sorry, prediction GlimmerHMM_glimmerT_62859-T1 fails validation.
(AGC)	 AG	226-307	GT	CGG
(CCT)	 AG	520-639	CC	GAC
-recovered GlimmerHMM_glimmerT_62859-T1, terminal, 520, 639
-recovered GlimmerHMM_glimmerT_62859-T1, internal, 226, 307
Couldn't classify 226, 307
Sorry, prediction Augustus_model.g41847.t1 fails validation.
(AGC)	 AG	226-307	GT	CGG
(CCT)	 AG	520-639	CC	GAC
-recovered Augustus_model.g41847.t1, terminal, 520, 639
-recovered Augustus_model.g41847.t1, internal, 226, 307
Couldn't classify 11, 107
Sorry, prediction GeneMark_model.109788_t fails validation.
(TGA)	 AG	11-107	GT	CCG
(AGC)	 AG	226-307	GT	CGG
(CCT)	 AG	520-620	GT	ACG
(AGG)	 AG	738-761	GT	AGG
(GTT)	 AG	784-792	GT	GGG
(GGA)	 AG	818-823	GT	AGG
(GTT)	 AG	1083-1091	GT	GGG
(GGA)	 AG	1114-1119	GT	AGG
(GGC)	 AG	1142-1178	GG	GAG
-recovered GeneMark_model.109788_t, terminal, 1142, 1178
-recovered GeneMark_model.109788_t, internal, 11, 107
-recovered GeneMark_model.109788_t, internal, 226, 307
-recovered GeneMark_model.109788_t, internal, 520, 620
-recovered GeneMark_model.109788_t, internal, 738, 761
-recovered GeneMark_model.109788_t, internal, 784, 792
-recovered GeneMark_model.109788_t, internal, 818, 823
-recovered GeneMark_model.109788_t, internal, 1083, 1091
-recovered GeneMark_model.109788_t, internal, 1114, 1119
Couldn't classify 226, 307
Couldn't classify 1625, 1660
Sorry, prediction snap_scaffold_1840-snap.1-T1 fails validation.
(AGC)	 AG	226-307	GT	CGG
(CCT)	 AG	520-582	GT	AGG
(GTT)	 AG	691-823	GT	AGG
(ATA)	 AG	1625-1660	GT	AGG
-recovered snap_scaffold_1840-snap.1-T1, internal, 226, 307
-recovered snap_scaffold_1840-snap.1-T1, internal, 520, 582
-recovered snap_scaffold_1840-snap.1-T1, internal, 691, 823
-recovered snap_scaffold_1840-snap.1-T1, internal, 1625, 1660

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1884
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support