-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1839

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 170, 198
Couldn't classify 1778, 1843
Sorry, prediction GeneMark_model.109787_t fails validation.
(AGA)	 AG	170-198	GT	GAG
(GGG)	 AG	672-690	GT	GGG
(GAG)	 AG	718-900	GT	GGG
(GAG)	 AG	928-987	GT	GGG
(GGG)	 AG	1009-1035	GT	GGG
(GAG)	 AG	1064-1216	GT	GTG
(ACG)	 AG	1469-1501	GT	CGG
(GAG)	 AG	1528-1536	GT	GGG
(AGA)	 AG	1696-1737	GT	GGG
(ATA)	 AG	1778-1843	GT	ACG
-recovered GeneMark_model.109787_t, internal, 170, 198
-recovered GeneMark_model.109787_t, internal, 672, 690
-recovered GeneMark_model.109787_t, internal, 718, 900
-recovered GeneMark_model.109787_t, internal, 928, 987
-recovered GeneMark_model.109787_t, internal, 1009, 1035
-recovered GeneMark_model.109787_t, internal, 1064, 1216
-recovered GeneMark_model.109787_t, internal, 1469, 1501
-recovered GeneMark_model.109787_t, internal, 1528, 1536
-recovered GeneMark_model.109787_t, internal, 1696, 1737
-recovered GeneMark_model.109787_t, internal, 1778, 1843
Couldn't classify 799, 1136
Couldn't classify 1401, 1519
Sorry, prediction snap_scaffold_1839-snap.1-T1 fails validation.
(TTT)	 AG	799-1136	GT	GGG
(CAT)	 AG	1401-1519	GT	AGG
-recovered snap_scaffold_1839-snap.1-T1, internal, 799, 1136
-recovered snap_scaffold_1839-snap.1-T1, internal, 1401, 1519

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1048, 1104
Couldn't classify 1821, 1884
Sorry, prediction Augustus_model.g41846.t1 fails validation.
(CCC)	 AG	1048-1104	GT	AGG
(TGG)	 AG	1821-1884		TG
-recovered Augustus_model.g41846.t1, internal, 1048, 1104

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1884
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support