-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1837

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 68, 107
Couldn't classify 1558, 1638
Sorry, prediction GeneMark_model.109784_t fails validation.
(GGA)	 AG	68-107	GT	TGG
(GAG)	 AG	400-493	GT	GCG
(GAA)	 AG	516-606	GT	GGG
(GGG)	 AG	634-645	GC	GAG
(AGA)	 AG	1141-1243	GT	CGG
(ACC)	 AG	1309-1340	GT	ATG
(AAA)	 AG	1558-1638	GT	CAG
-recovered GeneMark_model.109784_t, internal, 68, 107
-recovered GeneMark_model.109784_t, internal, 400, 493
-recovered GeneMark_model.109784_t, internal, 516, 606
-recovered GeneMark_model.109784_t, internal, 634, 645
-recovered GeneMark_model.109784_t, internal, 1141, 1243
-recovered GeneMark_model.109784_t, internal, 1309, 1340
-recovered GeneMark_model.109784_t, internal, 1558, 1638

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62857-T1
Couldn't classify 195, 276
Couldn't classify 1356, 1506
Sorry, prediction snap_scaffold_1837-snap.1-T1 fails validation.
(TGT)	 AG	195-276	GT	TGG
(GCT)	 AG	1356-1506	GT	GAG
-recovered snap_scaffold_1837-snap.1-T1, internal, 195, 276
-recovered snap_scaffold_1837-snap.1-T1, internal, 1356, 1506

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1887
-exon list size: 18


building trellis

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-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support