-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1836

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 310, 424
Sorry, prediction Augustus_model.g41845.t1 fails validation.
(GTA)	 AG	310-424	GT	ACG
(CTG)	 AG	517-552	AG	AAA
-recovered Augustus_model.g41845.t1, terminal, 517, 552
-recovered Augustus_model.g41845.t1, internal, 310, 424

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 10, 32
Sorry, prediction GeneMark_model.109783_t fails validation.
(GTG)	 AG	10-32	GT	AGG
(GCT)	 AG	56-141	GT	TCG
(AGA)	 AG	577-634	GT	GGG
(GGA)	 AG	758-973	GT	GAG
(GAG)	 AG	1057-1080	GT	AGG
(AGC)	 AG	1260-1271	GT	AGG
(GGA)	 AG	1306-1339	AT	AGA
-recovered GeneMark_model.109783_t, terminal, 1306, 1339
-recovered GeneMark_model.109783_t, internal, 10, 32
-recovered GeneMark_model.109783_t, internal, 56, 141
-recovered GeneMark_model.109783_t, internal, 577, 634
-recovered GeneMark_model.109783_t, internal, 758, 973
-recovered GeneMark_model.109783_t, internal, 1057, 1080
-recovered GeneMark_model.109783_t, internal, 1260, 1271

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1887
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support