-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1835

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62856-T1
Couldn't classify 597, 629
Sorry, prediction GeneMark_model.109782_t fails validation.
(AAG)	 AG	597-629	GT	AGG
(AGT)	 AG	671-827	AG	GAA
-recovered GeneMark_model.109782_t, terminal, 671, 827
-recovered GeneMark_model.109782_t, internal, 597, 629

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62855-T1
Couldn't classify 1048, 1182
Sorry, prediction snap_scaffold_1835-snap.1-T1 fails validation.
(GCG)	 AG	1048-1182	GT	ATG
(TCG)	 AG	1686-1775	GA	GAG
-recovered snap_scaffold_1835-snap.1-T1, terminal, 1686, 1775
-recovered snap_scaffold_1835-snap.1-T1, internal, 1048, 1182

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1887
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support