-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1834

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 54, 156
Couldn't classify 1832, 1861
Sorry, prediction GeneMark_model.109781_t fails validation.
(GTC)	 AG	54-156	GT	TTG
(GAT)	 AG	190-290	GT	GAG
(ACA)	 AG	322-387	GT	GAG
(GGG)	 AG	954-1031	GC	GAG
(GAG)	 AG	1054-1062	GT	GGG
(GGA)	 AG	1100-1156	GT	ATG
(CAT)	 AG	1531-1626	GT	GTG
(GAA)	 AG	1719-1808	GT	CAG
(GGG)	 AG	1832-1861	GT	AGG
-recovered GeneMark_model.109781_t, internal, 54, 156
-recovered GeneMark_model.109781_t, internal, 190, 290
-recovered GeneMark_model.109781_t, internal, 322, 387
-recovered GeneMark_model.109781_t, internal, 954, 1031
-recovered GeneMark_model.109781_t, internal, 1054, 1062
-recovered GeneMark_model.109781_t, internal, 1100, 1156
-recovered GeneMark_model.109781_t, internal, 1531, 1626
-recovered GeneMark_model.109781_t, internal, 1719, 1808
-recovered GeneMark_model.109781_t, internal, 1832, 1861

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1652, 1828
Sorry, prediction Augustus_model.g41844.t1 fails validation.
(ACT)	 AG	1652-1828	GT	AAG
-recovered Augustus_model.g41844.t1, internal, 1652, 1828

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1888
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support