-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1832

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 10, 56
Sorry, prediction GeneMark_model.109779_t fails validation.
(GGA)	 AG	10-56	GT	GAG
(GGA)	 AG	78-261	TT	GAT
-recovered GeneMark_model.109779_t, terminal, 78, 261
-recovered GeneMark_model.109779_t, internal, 10, 56

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1310, 1473
Sorry, prediction Augustus_model.g41842.t1 fails validation.
(GCT)	 AG	1310-1473	GT	AAG
-recovered Augustus_model.g41842.t1, internal, 1310, 1473
Valid prediction for GlimmerHMM_glimmerT_62854-T1
Couldn't classify 159, 173
Sorry, prediction GeneMark_model.109780_t fails validation.
(GGA)	 AG	159-173	GT	GGG
(AGA)	 AG	196-204	GT	GAG
(AGA)	 AG	304-360	GT	GGG
(AAA)	 AG	382-402	GT	GGG
(AGA)	 AG	426-431	GT	AGG
(AGA)	 AG	465-500	GT	TGG
(GAG)	 AG	521-568	GC	GAG
(CTA)	 AG	596-667	GT	GTG
(GGA)	 AG	898-912	GT	AGG
(GGA)	 AG	986-1055	GT	TTG
(GCT)	 AG	1310-1477	GT	GAG
-recovered GeneMark_model.109780_t, terminal, 1310, 1477
-recovered GeneMark_model.109780_t, internal, 159, 173
-recovered GeneMark_model.109780_t, internal, 196, 204
-recovered GeneMark_model.109780_t, internal, 304, 360
-recovered GeneMark_model.109780_t, internal, 382, 402
-recovered GeneMark_model.109780_t, internal, 426, 431
-recovered GeneMark_model.109780_t, internal, 465, 500
-recovered GeneMark_model.109780_t, internal, 521, 568
-recovered GeneMark_model.109780_t, internal, 596, 667
-recovered GeneMark_model.109780_t, internal, 898, 912
-recovered GeneMark_model.109780_t, internal, 986, 1055
-recovered GeneMark_model.109780_t, internal, 1310, 1477

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1890
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support