-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1831

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.109778_t
Couldn't classify 409, 546
Couldn't classify 1721, 1876
Sorry, prediction snap_scaffold_1831-snap.1-T1 fails validation.
(TCG)	 AG	409-546	GT	TGG
(GCA)	 AG	1721-1876	GT	AAG
-recovered snap_scaffold_1831-snap.1-T1, internal, 409, 546
-recovered snap_scaffold_1831-snap.1-T1, internal, 1721, 1876

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1415, 1611
Sorry, prediction GeneMark_model.109777_t fails validation.
(ATG)	 TA	254-263	GT	CAG
(GCA)	 AG	369-399	GT	GCG
(GCA)	 AG	781-816	GC	AGG
(AGA)	 AG	841-846	GC	AGG
(CGA)	 AG	869-880	GC	AGG
(AGA)	 AG	903-920	GC	AGG
(GCA)	 AG	943-1266	GT	GAG
(AGT)	 AG	1340-1364	GT	CTG
(GGC)	 AG	1415-1611	GT	TGG
-recovered GeneMark_model.109777_t, initial, 254, 263
-recovered GeneMark_model.109777_t, internal, 369, 399
-recovered GeneMark_model.109777_t, internal, 781, 816
-recovered GeneMark_model.109777_t, internal, 841, 846
-recovered GeneMark_model.109777_t, internal, 869, 880
-recovered GeneMark_model.109777_t, internal, 903, 920
-recovered GeneMark_model.109777_t, internal, 943, 1266
-recovered GeneMark_model.109777_t, internal, 1340, 1364
-recovered GeneMark_model.109777_t, internal, 1415, 1611
Valid prediction for GlimmerHMM_glimmerT_62853-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1891
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support