-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1830

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1329, 1628
Sorry, prediction snap_scaffold_1830-snap.2-T1 fails validation.
(GTC)	 AG	1329-1628	GT	TGG
-recovered snap_scaffold_1830-snap.2-T1, internal, 1329, 1628
Couldn't classify 65, 99
Sorry, prediction GeneMark_model.109775_t fails validation.
(GAA)	 AG	65-99	GT	GGG
(AGA)	 AG	290-346	GC	AGG
(ACA)	 AG	369-530	GC	GAG
(AGC)	 AG	554-586	GT	GTG
(CGA)	 AG	684-720	AC	AAA
-recovered GeneMark_model.109775_t, terminal, 684, 720
-recovered GeneMark_model.109775_t, internal, 65, 99
-recovered GeneMark_model.109775_t, internal, 290, 346
-recovered GeneMark_model.109775_t, internal, 369, 530
-recovered GeneMark_model.109775_t, internal, 554, 586

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62852-T1
Couldn't classify 111, 117
Sorry, prediction GeneMark_model.109776_t fails validation.
(AGT)	 AG	111-117	GT	GTG
(GGC)	 AG	657-715	GT	GAG
(GGG)	 AG	757-1009	CT	AAC
-recovered GeneMark_model.109776_t, terminal, 757, 1009
-recovered GeneMark_model.109776_t, internal, 111, 117
-recovered GeneMark_model.109776_t, internal, 657, 715
Valid prediction for snap_scaffold_1830-snap.1-T1
add_exon() Sorry, snap_scaffold_1830-snap.1-T1 657-1009-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1892
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support