-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_183

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 388, 468
Sorry, prediction snap_scaffold_183-snap.1-T1 fails validation.
(CTG)	 AG	388-468	GT	AGG
(CTG)	 AG	1780-1840	GT	AGG
(AGG)	 AG	1984-2014	GT	GGG
(CTG)	 AG	2055-2114	GT	AGG
(CTG)	 AG	2328-2388	GT	AGG
(GAG)	 AG	3169-3295	GT	AGG
(GAG)	 AG	4059-4113	AG	AAA
-recovered snap_scaffold_183-snap.1-T1, terminal, 4059, 4113
-recovered snap_scaffold_183-snap.1-T1, internal, 388, 468
-recovered snap_scaffold_183-snap.1-T1, internal, 1780, 1840
-recovered snap_scaffold_183-snap.1-T1, internal, 1984, 2014
-recovered snap_scaffold_183-snap.1-T1, internal, 2055, 2114
-recovered snap_scaffold_183-snap.1-T1, internal, 2328, 2388
-recovered snap_scaffold_183-snap.1-T1, internal, 3169, 3295

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 9751, 9869
Sorry, prediction GeneMark_model.106855_t fails validation.
(ATG)	 AT	5687-5719	GT	AAG
(CTC)	 AG	6102-6136	GT	GAG
(GAG)	 AG	6160-6297	GT	CCG
(GGA)	 AG	6417-6590	GT	GGG
(GGA)	 AG	6724-6738	GT	CGG
(GCA)	 AG	6769-6933	GT	CCG
(AGA)	 AG	7054-7110	GT	TGG
(GGC)	 AG	7320-7328	GT	AGG
(GGA)	 AG	7355-7405	GT	GCG
(AGG)	 AG	7430-7555	GT	GGG
(AGG)	 AG	7672-7680	GT	AGG
(AGC)	 AG	7706-7846	GT	AAG
(GAA)	 AG	7978-8031	GT	CGG
(AGG)	 AG	8229-8237	GT	AGG
(GAA)	 AG	8258-8410	GT	GGG
(AGA)	 AG	8502-8591	GT	CGG
(AGG)	 AG	8795-8815	GT	GAG
(AGG)	 AG	8857-8916	GC	AGG
(GAC)	 AG	8938-9081	GT	GCG
(GGG)	 AG	9212-9427	GT	GGG
(AGA)	 AG	9519-9705	GT	AGG
(GGG)	 AG	9751-9869	GT	GAG
-recovered GeneMark_model.106855_t, initial, 5687, 5719
add_exon() Sorry, GeneMark_model.106855_t 6102-6136-terminal-2 is invalid.
-recovered GeneMark_model.106855_t, terminal, 6102, 6136
add_exon() Sorry, GeneMark_model.106855_t 7706-7846-terminal-1 is invalid.
-recovered GeneMark_model.106855_t, terminal, 7706, 7846
-recovered GeneMark_model.106855_t, internal, 6102, 6136
-recovered GeneMark_model.106855_t, internal, 6160, 6297
-recovered GeneMark_model.106855_t, internal, 6417, 6590
-recovered GeneMark_model.106855_t, internal, 6724, 6738
-recovered GeneMark_model.106855_t, internal, 6769, 6933
-recovered GeneMark_model.106855_t, internal, 7054, 7110
-recovered GeneMark_model.106855_t, internal, 7320, 7328
-recovered GeneMark_model.106855_t, internal, 7355, 7405
-recovered GeneMark_model.106855_t, internal, 7430, 7555
-recovered GeneMark_model.106855_t, internal, 7672, 7680
-recovered GeneMark_model.106855_t, internal, 7706, 7846
-recovered GeneMark_model.106855_t, internal, 7978, 8031
-recovered GeneMark_model.106855_t, internal, 8229, 8237
-recovered GeneMark_model.106855_t, internal, 8258, 8410
-recovered GeneMark_model.106855_t, internal, 8502, 8591
-recovered GeneMark_model.106855_t, internal, 8795, 8815
-recovered GeneMark_model.106855_t, internal, 8857, 8916
-recovered GeneMark_model.106855_t, internal, 8938, 9081
-recovered GeneMark_model.106855_t, internal, 9212, 9427
-recovered GeneMark_model.106855_t, internal, 9519, 9705
-recovered GeneMark_model.106855_t, internal, 9751, 9869
Valid prediction for GeneMark_model.106856_t
Valid prediction for GlimmerHMM_glimmerT_61465-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 10185
-exon list size: 59


building trellis

1.6    
3.3    
4.9    
6.6    
8.2    
9.8    
11.5    
13.1    
14.8    
16.4    
18.0    
19.7    
21.3    
23.0    
24.6    
26.2    
27.9    
29.5    
31.1    
32.8    
34.4    
36.1    
37.7    
39.3    
41.0    
42.6    
44.3    
45.9    
47.5    
49.2    
50.8    
52.5    
54.1    
55.7    
57.4    
59.0    
60.7    
62.3    
63.9    
65.6    
67.2    
68.9    
70.5    
72.1    
73.8    
75.4    
77.0    
78.7    
80.3    
82.0    
83.6    
85.2    
86.9    
88.5    
90.2    
91.8    
93.4    
95.1    
96.7    
98.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support