-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1829

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1565, 1726
Sorry, prediction GlimmerHMM_glimmerT_62851-T1 fails validation.
(ATG)	 CC	1106-1175	GT	AGG
(CAT)	 AG	1565-1726	GT	CGG
-recovered GlimmerHMM_glimmerT_62851-T1, initial, 1106, 1175
-recovered GlimmerHMM_glimmerT_62851-T1, internal, 1565, 1726
Couldn't classify 107, 263
Couldn't classify 1565, 1726
Sorry, prediction Augustus_model.g41841.t1 fails validation.
(GTG)	 AG	107-263	GT	GGG
(AGA)	 AG	1080-1175	GT	AGG
(CAT)	 AG	1565-1726	GT	CGG
-recovered Augustus_model.g41841.t1, internal, 107, 263
-recovered Augustus_model.g41841.t1, internal, 1080, 1175
-recovered Augustus_model.g41841.t1, internal, 1565, 1726
Valid prediction for GlimmerHMM_glimmerT_62850-T1
Couldn't classify 47, 81
Couldn't classify 1565, 1726
Sorry, prediction GeneMark_model.109774_t fails validation.
(GGT)	 AG	47-81	GT	CCG
(GTG)	 AG	107-263	GT	GGG
(CAT)	 AG	1565-1726	GT	CGG
-recovered GeneMark_model.109774_t, internal, 47, 81
-recovered GeneMark_model.109774_t, internal, 107, 263
-recovered GeneMark_model.109774_t, internal, 1565, 1726
Couldn't classify 107, 263
Couldn't classify 1565, 1726
Sorry, prediction snap_scaffold_1829-snap.1-T1 fails validation.
(GTG)	 AG	107-263	GT	GGG
(AGA)	 AG	1080-1175	GT	AGG
(CAT)	 AG	1565-1726	GT	CGG
-recovered snap_scaffold_1829-snap.1-T1, internal, 107, 263
-recovered snap_scaffold_1829-snap.1-T1, internal, 1080, 1175
-recovered snap_scaffold_1829-snap.1-T1, internal, 1565, 1726
Couldn't classify 107, 263
Couldn't classify 1565, 1719
Sorry, prediction pasa_asmbl_21167.p1 fails validation.
(GTG)	 AG	107-263	GT	GGG
(AGA)	 AG	1080-1175	GT	AGG
(CAT)	 AG	1565-1719	GG	GGG
-recovered pasa_asmbl_21167.p1, internal, 107, 263
-recovered pasa_asmbl_21167.p1, internal, 1080, 1175

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1895
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support