-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1828

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 20, 194
Sorry, prediction GlimmerHMM_glimmerT_62849-T1 fails validation.
(GCT)	 AG	20-194	GT	AGG
(TTC)	 AG	1377-1535	CG	AAC
-recovered GlimmerHMM_glimmerT_62849-T1, terminal, 1377, 1535
-recovered GlimmerHMM_glimmerT_62849-T1, internal, 20, 194
Couldn't classify 20, 194
Couldn't classify 1846, 1882
Sorry, prediction GeneMark_model.109773_t fails validation.
(GCT)	 AG	20-194	GT	AGG
(ATG)	 AG	1386-1510	GT	AAG
(TCT)	 AG	1846-1882	GT	GAG
-recovered GeneMark_model.109773_t, initial, 1386, 1510
-recovered GeneMark_model.109773_t, internal, 20, 194
-recovered GeneMark_model.109773_t, internal, 1386, 1510
-recovered GeneMark_model.109773_t, internal, 1846, 1882
Valid prediction for snap_scaffold_1828-snap.1-T1
add_exon() Sorry, snap_scaffold_1828-snap.1-T1 20-275-terminal-1 is invalid.
Couldn't classify 1846, 1897
Sorry, prediction Augustus_model.g41840.t1 fails validation.
(ATG)	 AA	156-194	GT	AGG
(ATG)	 AG	1386-1510	GT	AAG
(TCT)	 AG	1846-1897		GC
-recovered Augustus_model.g41840.t1, initial, 156, 194
-recovered Augustus_model.g41840.t1, initial, 1386, 1510
-recovered Augustus_model.g41840.t1, internal, 1386, 1510

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1897
-exon list size: 8


building trellis

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90.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support