-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1827

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 165, 191
Couldn't classify 1845, 1859
Sorry, prediction GeneMark_model.109772_t fails validation.
(AGG)	 AG	165-191	GT	AAG
(GAC)	 AG	645-821	GT	AGG
(GGA)	 AG	858-908	GT	GAG
(GGG)	 AG	930-1031	GT	AGG
(GTG)	 AG	1057-1104	GT	AGG
(GGA)	 AG	1137-1160	GT	AGG
(GAG)	 AG	1185-1304	GT	GGG
(GAG)	 AG	1327-1335	GT	AGG
(GGA)	 AG	1356-1421	GT	AGG
(AGG)	 AG	1444-1623	GT	AGG
(TGG)	 AG	1651-1671	GT	AGG
(GGA)	 AG	1698-1739	GT	AGG
(AAG)	 AG	1772-1783	GT	AGG
(GGA)	 AG	1814-1822	GT	AGG
(TGG)	 AG	1845-1859	GT	AGG
-recovered GeneMark_model.109772_t, internal, 165, 191
-recovered GeneMark_model.109772_t, internal, 645, 821
-recovered GeneMark_model.109772_t, internal, 858, 908
-recovered GeneMark_model.109772_t, internal, 930, 1031
-recovered GeneMark_model.109772_t, internal, 1057, 1104
-recovered GeneMark_model.109772_t, internal, 1137, 1160
-recovered GeneMark_model.109772_t, internal, 1185, 1304
-recovered GeneMark_model.109772_t, internal, 1327, 1335
-recovered GeneMark_model.109772_t, internal, 1356, 1421
-recovered GeneMark_model.109772_t, internal, 1444, 1623
-recovered GeneMark_model.109772_t, internal, 1651, 1671
-recovered GeneMark_model.109772_t, internal, 1698, 1739
-recovered GeneMark_model.109772_t, internal, 1772, 1783
-recovered GeneMark_model.109772_t, internal, 1814, 1822
-recovered GeneMark_model.109772_t, internal, 1845, 1859
Couldn't classify 645, 850
Sorry, prediction snap_scaffold_1827-snap.1-T1 fails validation.
(GAC)	 AG	645-850	GT	TGG
(GTG)	 AG	1082-1767	AG	GAA
-recovered snap_scaffold_1827-snap.1-T1, terminal, 1082, 1767
-recovered snap_scaffold_1827-snap.1-T1, internal, 645, 850

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1902
-exon list size: 43


building trellis

2.2    
4.4    
6.7    
8.9    
11.1    
13.3    
15.6    
17.8    
20.0    
22.2    
24.4    
26.7    
28.9    
31.1    
33.3    
35.6    
37.8    
40.0    
42.2    
44.4    
46.7    
48.9    
51.1    
53.3    
55.6    
57.8    
60.0    
62.2    
64.4    
66.7    
68.9    
71.1    
73.3    
75.6    
77.8    
80.0    
82.2    
84.4    
86.7    
88.9    
91.1    
93.3    
95.6    
97.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support