-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1826

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 671, 775
Couldn't classify 1152, 1328
Sorry, prediction snap_scaffold_1826-snap.1-T1 fails validation.
(ACA)	 AG	671-775	GT	CGG
(GGT)	 AG	1152-1328	GT	GAG
-recovered snap_scaffold_1826-snap.1-T1, internal, 671, 775
-recovered snap_scaffold_1826-snap.1-T1, internal, 1152, 1328
Couldn't classify 1798, 1891
Sorry, prediction GeneMark_model.109771_t fails validation.
(ATG)	 AG	1057-1088	GT	GAG
(ACC)	 AG	1190-1328	GT	GAG
(GGA)	 AG	1359-1459	GT	CTG
(ACC)	 AG	1485-1553	GT	GTG
(GCA)	 AG	1798-1891	GC	GAG
-recovered GeneMark_model.109771_t, initial, 1057, 1088
-recovered GeneMark_model.109771_t, internal, 1057, 1088
-recovered GeneMark_model.109771_t, internal, 1190, 1328
-recovered GeneMark_model.109771_t, internal, 1359, 1459
-recovered GeneMark_model.109771_t, internal, 1485, 1553
-recovered GeneMark_model.109771_t, internal, 1798, 1891

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62848-T1
Valid prediction for GeneMark_model.109770_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1902
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support