-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1823

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 140, 238
Sorry, prediction GeneMark_model.109767_t fails validation.
(CCA)	 AG	140-238	GT	CGG
(AGA)	 AG	705-794	GT	AGG
(ACT)	 AG	823-873	GT	GAG
(AGC)	 AG	897-941	GT	GAG
(AGA)	 AG	974-1084	GC	GAG
(AAG)	 AG	1110-1266	TG	AAT
-recovered GeneMark_model.109767_t, terminal, 1110, 1266
-recovered GeneMark_model.109767_t, internal, 140, 238
-recovered GeneMark_model.109767_t, internal, 705, 794
-recovered GeneMark_model.109767_t, internal, 823, 873
-recovered GeneMark_model.109767_t, internal, 897, 941
-recovered GeneMark_model.109767_t, internal, 974, 1084

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 298, 388
Sorry, prediction GlimmerHMM_glimmerT_62846-T1 fails validation.
(GTG)	 AG	298-388	GT	CAG
(TCT)	 AG	1227-1384	CA	GAC
-recovered GlimmerHMM_glimmerT_62846-T1, terminal, 1227, 1384
-recovered GlimmerHMM_glimmerT_62846-T1, internal, 298, 388
Couldn't classify 1563, 1780
Sorry, prediction Augustus_model.g41838.t1 fails validation.
(ATG)	 CA	280-388	GT	CAG
(ACA)	 AG	1258-1320	GT	AGG
(CAC)	 AG	1407-1420	GT	AGG
(TCA)	 AG	1563-1780	GT	AGG
-recovered Augustus_model.g41838.t1, initial, 280, 388
-recovered Augustus_model.g41838.t1, internal, 1258, 1320
-recovered Augustus_model.g41838.t1, internal, 1407, 1420
-recovered Augustus_model.g41838.t1, internal, 1563, 1780
Valid prediction for snap_scaffold_1823-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1905
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support