-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1822

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1822-snap.1-T1
add_exon() Sorry, snap_scaffold_1822-snap.1-T1 1318-1603-terminal-1 is invalid.
Couldn't classify 1318, 1349
Couldn't classify 1627, 1645
Sorry, prediction GeneMark_model.109766_t fails validation.
(GAG)	 AG	1318-1349	GT	TTG
(CCC)	 AG	1385-1588	GT	CTG
(ATA)	 AG	1627-1645	GT	AGG
-recovered GeneMark_model.109766_t, internal, 1318, 1349
-recovered GeneMark_model.109766_t, internal, 1385, 1588
-recovered GeneMark_model.109766_t, internal, 1627, 1645

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1909
-exon list size: 8


building trellis

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20.0    
30.0    
40.0    
50.0    
60.0    
70.0    
80.0    
90.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support