-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1821

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1800, 1817
Sorry, prediction GeneMark_model.109765_t fails validation.
(ATG)	 GG	1590-1741	GT	GAG
(GAA)	 AG	1762-1770	GT	GAG
(GGA)	 AG	1800-1817	GC	GAG
-recovered GeneMark_model.109765_t, initial, 1590, 1741
-recovered GeneMark_model.109765_t, internal, 1762, 1770
-recovered GeneMark_model.109765_t, internal, 1800, 1817

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 209, 408
Couldn't classify 1455, 1526
Sorry, prediction snap_scaffold_1821-snap.1-T1 fails validation.
(CTC)	 AG	209-408	GT	AGG
(TGT)	 AG	550-887	GT	AGG
(GAG)	 AG	1455-1526	GT	AGG
-recovered snap_scaffold_1821-snap.1-T1, internal, 209, 408
-recovered snap_scaffold_1821-snap.1-T1, internal, 550, 887
-recovered snap_scaffold_1821-snap.1-T1, internal, 1455, 1526
Couldn't classify 209, 408
Couldn't classify 1455, 1526
Sorry, prediction Augustus_model.g41837.t1 fails validation.
(CTC)	 AG	209-408	GT	AGG
(TGT)	 AG	550-887	GT	AGG
(GAG)	 AG	1455-1526	GT	AGG
-recovered Augustus_model.g41837.t1, internal, 209, 408
-recovered Augustus_model.g41837.t1, internal, 550, 887
-recovered Augustus_model.g41837.t1, internal, 1455, 1526
Valid prediction for GlimmerHMM_glimmerT_62845-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62845-T1 209-446-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_62844-T1
Couldn't classify 1501, 1526
Sorry, prediction GeneMark_model.109764_t fails validation.
(ATG)	 CC	354-408	GT	AGG
(TGT)	 AG	550-719	GT	AGG
(GAG)	 AG	760-770	GT	GGG
(CTC)	 AG	809-887	GT	AGG
(GAG)	 AG	1455-1471	GT	GGG
(ACC)	 AG	1501-1526	GT	AGG
-recovered GeneMark_model.109764_t, initial, 354, 408
-recovered GeneMark_model.109764_t, internal, 550, 719
-recovered GeneMark_model.109764_t, internal, 760, 770
-recovered GeneMark_model.109764_t, internal, 809, 887
-recovered GeneMark_model.109764_t, internal, 1455, 1471
-recovered GeneMark_model.109764_t, internal, 1501, 1526
Couldn't classify 234, 408
Couldn't classify 1455, 1526
Sorry, prediction pasa_asmbl_21165.p1 fails validation.
(GCC)	 CA	234-408	GT	AGG
(TGT)	 AG	550-887	GT	AGG
(GAG)	 AG	1455-1526	GT	AGG
-recovered pasa_asmbl_21165.p1, internal, 550, 887
-recovered pasa_asmbl_21165.p1, internal, 1455, 1526

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1911
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support