-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1820

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62843-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62843-T1 378-541-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 34, 147
Couldn't classify 1858, 1900
Sorry, prediction GeneMark_model.109763_t fails validation.
(AGG)	 AG	34-147	GT	GGG
(AAC)	 AG	546-595	GT	CAG
(GTC)	 AG	710-771	GT	AGG
(ACC)	 AG	907-929	GT	GAG
(GTG)	 AG	1343-1389	GT	GTG
(TGT)	 AG	1419-1499	GT	AGG
(TGT)	 AG	1524-1544	GT	GGG
(TGT)	 AG	1858-1900	GT	CCG
-recovered GeneMark_model.109763_t, internal, 34, 147
-recovered GeneMark_model.109763_t, internal, 546, 595
-recovered GeneMark_model.109763_t, internal, 710, 771
-recovered GeneMark_model.109763_t, internal, 907, 929
-recovered GeneMark_model.109763_t, internal, 1343, 1389
-recovered GeneMark_model.109763_t, internal, 1419, 1499
-recovered GeneMark_model.109763_t, internal, 1524, 1544
-recovered GeneMark_model.109763_t, internal, 1858, 1900

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1911
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support