-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_182

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61463-T1
Valid prediction for GeneMark_model.106853_t
Valid prediction for Augustus_model.g40876.t1
Valid prediction for GeneMark_model.106851_t
Couldn't classify 7809, 7947
Sorry, prediction snap_scaffold_182-snap.1-T1 fails validation.
(ATG)	 GT	3619-3622	GT	GAG
(GCG)	 AG	6323-6412	GT	TGG
(ACC)	 AG	6957-7216	GT	AGG
(CGT)	 AG	7499-7633	GT	AGG
(GAG)	 AG	7809-7947	GT	AGG
-recovered snap_scaffold_182-snap.1-T1, initial, 3619, 3622
-recovered snap_scaffold_182-snap.1-T1, internal, 6323, 6412
-recovered snap_scaffold_182-snap.1-T1, internal, 6957, 7216
-recovered snap_scaffold_182-snap.1-T1, internal, 7499, 7633
-recovered snap_scaffold_182-snap.1-T1, internal, 7809, 7947

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_182-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_61464-T1
Couldn't classify 214, 282
Sorry, prediction GeneMark_model.106854_t fails validation.
(GAA)	 AG	214-282	GT	GAG
(TGA)	 AG	597-694	GT	CGG
(AAT)	 AG	886-917	GA	GAG
-recovered GeneMark_model.106854_t, terminal, 886, 917
-recovered GeneMark_model.106854_t, internal, 214, 282
-recovered GeneMark_model.106854_t, internal, 597, 694

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7947, rend_intergenic: 6513  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 10388
-exon list size: 35


building trellis

2.7    
5.4    
8.1    
10.8    
13.5    
16.2    
18.9    
21.6    
24.3    
27.0    
29.7    
32.4    
35.1    
37.8    
40.5    
43.2    
45.9    
48.6    
51.4    
54.1    
56.8    
59.5    
62.2    
64.9    
67.6    
70.3    
73.0    
75.7    
78.4    
81.1    
83.8    
86.5    
89.2    
91.9    
94.6    
97.3    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 7947, rend_intergenic: 6513  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support