-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1816

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 961, 1040
Couldn't classify 1690, 1816
Sorry, prediction snap_scaffold_1816-snap.1-T1 fails validation.
(AAG)	 AG	961-1040	GT	GGG
(ACG)	 AG	1053-1425	GT	ATG
(AAT)	 AG	1690-1816	GT	AGG
-recovered snap_scaffold_1816-snap.1-T1, internal, 961, 1040
-recovered snap_scaffold_1816-snap.1-T1, internal, 1053, 1425
-recovered snap_scaffold_1816-snap.1-T1, internal, 1690, 1816
Valid prediction for GlimmerHMM_glimmerT_62841-T1
Valid prediction for GeneMark_model.109761_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1301, 1408
Sorry, prediction GeneMark_model.109760_t fails validation.
(ATG)	 AC	1189-1215	GT	CTG
(GCA)	 AG	1301-1408	GT	CGG
-recovered GeneMark_model.109760_t, initial, 1189, 1215
-recovered GeneMark_model.109760_t, internal, 1301, 1408

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1913
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support