-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1814

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62839-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62839-T1 142-544-terminal-1 is invalid.
Couldn't classify 186, 290
Sorry, prediction Augustus_model.g41834.t1 fails validation.
(CAA)	 AG	186-290	GT	GGG
(TGT)	 AG	570-611	CA	GAC
-recovered Augustus_model.g41834.t1, terminal, 570, 611
-recovered Augustus_model.g41834.t1, internal, 186, 290

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 108, 224
Sorry, prediction Augustus_model.g41835.t1 fails validation.
(AGC)	 AG	108-224	GT	AGG
(AAG)	 AG	365-486	GT	CAG
(GAA)	 AG	588-984	GT	AAG
-recovered Augustus_model.g41835.t1, terminal, 588, 984
-recovered Augustus_model.g41835.t1, internal, 108, 224
-recovered Augustus_model.g41835.t1, internal, 365, 486
-recovered Augustus_model.g41835.t1, internal, 588, 984
Couldn't classify 108, 224
Sorry, prediction snap_scaffold_1814-snap.1-T1 fails validation.
(AGC)	 AG	108-224	GT	AGG
(AAG)	 AG	365-486	GT	CAG
(GAA)	 AG	588-980	GT	CAG
(CAT)	 AG	1576-1765	CT	GAC
-recovered snap_scaffold_1814-snap.1-T1, terminal, 1576, 1765
-recovered snap_scaffold_1814-snap.1-T1, internal, 108, 224
-recovered snap_scaffold_1814-snap.1-T1, internal, 365, 486
-recovered snap_scaffold_1814-snap.1-T1, internal, 588, 980
Couldn't classify 108, 224
Sorry, prediction GlimmerHMM_glimmerT_62840-T1 fails validation.
(AGC)	 AG	108-224	GT	AGG
(AAG)	 AG	365-486	GT	CAG
(GAA)	 AG	588-984	GT	AAG
-recovered GlimmerHMM_glimmerT_62840-T1, terminal, 588, 984
-recovered GlimmerHMM_glimmerT_62840-T1, internal, 108, 224
-recovered GlimmerHMM_glimmerT_62840-T1, internal, 365, 486
-recovered GlimmerHMM_glimmerT_62840-T1, internal, 588, 984
Couldn't classify 108, 224
Sorry, prediction pasa_asmbl_21164.p1 fails validation.
(AGC)	 AG	108-224	GT	AGG
(AAG)	 AG	365-486	GT	CAG
(GAA)	 AG	588-984	GT	AAG
-recovered pasa_asmbl_21164.p1, terminal, 588, 984
-recovered pasa_asmbl_21164.p1, internal, 108, 224
-recovered pasa_asmbl_21164.p1, internal, 365, 486
-recovered pasa_asmbl_21164.p1, internal, 588, 984
Couldn't classify 108, 224
Sorry, prediction GeneMark_model.109759_t fails validation.
(AGC)	 AG	108-224	GT	AGG
(AAG)	 AG	365-486	GT	CAG
(GAA)	 AG	588-984	GT	AAG
-recovered GeneMark_model.109759_t, terminal, 588, 984
-recovered GeneMark_model.109759_t, internal, 108, 224
-recovered GeneMark_model.109759_t, internal, 365, 486
-recovered GeneMark_model.109759_t, internal, 588, 984
Valid prediction for CodingQuarry_transcript_23889-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1913
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support