-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1813

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 404, 556
Sorry, prediction GeneMark_model.109756_t fails validation.
(GGA)	 AG	404-556	GC	GGG
(GAG)	 AG	885-953	GT	AAG
(GGA)	 AG	1081-1108	TG	GAT
-recovered GeneMark_model.109756_t, terminal, 1081, 1108
-recovered GeneMark_model.109756_t, internal, 404, 556
-recovered GeneMark_model.109756_t, internal, 885, 953
Valid prediction for Augustus_model.g41833.t1
Valid prediction for GlimmerHMM_glimmerT_62838-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 409, 599
Sorry, prediction snap_scaffold_1813-snap.1-T1 fails validation.
(GTG)	 AG	409-599	GT	GGG
-recovered snap_scaffold_1813-snap.1-T1, internal, 409, 599
Couldn't classify 35, 73
Sorry, prediction GeneMark_model.109757_t fails validation.
(GGG)	 AG	35-73	GT	GGG
(GAA)	 AG	94-136	GT	AGG
(GTG)	 AG	409-603	AA	AGA
-recovered GeneMark_model.109757_t, terminal, 409, 603
-recovered GeneMark_model.109757_t, internal, 35, 73
-recovered GeneMark_model.109757_t, internal, 94, 136

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1914
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support