-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_181

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 9811, 9943
Sorry, prediction Augustus_model.g40875.t1 fails validation.
(ATG)	 CC	6836-7084	GT	TGG
(ACA)	 AG	7254-7436	GT	TGG
(CTG)	 AG	8007-8131	GT	AGG
(CAT)	 AG	8358-8486	GT	CGG
(ATC)	 AG	9811-9943	GT	CTG
-recovered Augustus_model.g40875.t1, initial, 6836, 7084
-recovered Augustus_model.g40875.t1, internal, 7254, 7436
-recovered Augustus_model.g40875.t1, internal, 8007, 8131
-recovered Augustus_model.g40875.t1, internal, 8358, 8486
-recovered Augustus_model.g40875.t1, internal, 9811, 9943
Couldn't classify 10066, 10076
Sorry, prediction GeneMark_model.106850_t fails validation.
(ATG)	 GT	9818-10023	GT	GGG
(GAA)	 AG	10066-10076	GT	AAG
-recovered GeneMark_model.106850_t, initial, 9818, 10023
-recovered GeneMark_model.106850_t, internal, 10066, 10076
Valid prediction for snap_scaffold_181-snap.2-T1
Valid prediction for snap_scaffold_181-snap.3-T1
Valid prediction for snap_scaffold_181-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_61461-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61462-T1
Valid prediction for GeneMark_model.106849_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 10454
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 3 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support