-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1809

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 343, 689
Sorry, prediction snap_scaffold_1809-snap.1-T1 fails validation.
(AAG)	 AG	343-689	GT	GGG
-recovered snap_scaffold_1809-snap.1-T1, internal, 343, 689
Couldn't classify 336, 544
Sorry, prediction GeneMark_model.109754_t fails validation.
(GGT)	 AG	336-544	GT	CAG
(GAG)	 AG	573-623	GT	AGG
(AGA)	 AG	648-689	GT	GGG
(GAG)	 AG	890-952	GT	AAG
(GAG)	 AG	975-983	GT	GAG
(GAG)	 AG	1008-1029	GC	AAG
-recovered GeneMark_model.109754_t, terminal, 1008, 1029
-recovered GeneMark_model.109754_t, internal, 336, 544
-recovered GeneMark_model.109754_t, internal, 573, 623
-recovered GeneMark_model.109754_t, internal, 648, 689
-recovered GeneMark_model.109754_t, internal, 890, 952
-recovered GeneMark_model.109754_t, internal, 975, 983
-recovered GeneMark_model.109754_t, internal, 1008, 1029

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1366, 1597
Sorry, prediction Augustus_model.g41832.t1 fails validation.
(GGT)	 AG	1366-1597	GT	AGG
-recovered Augustus_model.g41832.t1, internal, 1366, 1597

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1916
-exon list size: 18


building trellis

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10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support