-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1806

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 98, 255
Couldn't classify 1335, 1465
Sorry, prediction snap_scaffold_1806-snap.1-T1 fails validation.
(GTG)	 AG	98-255	GT	GGG
(CTG)	 AG	1335-1465	GT	GGG
-recovered snap_scaffold_1806-snap.1-T1, internal, 98, 255
-recovered snap_scaffold_1806-snap.1-T1, internal, 1335, 1465
Couldn't classify 98, 255
Couldn't classify 1860, 1896
Sorry, prediction GeneMark_model.109751_t fails validation.
(GTG)	 AG	98-255	GT	GGG
(GGG)	 AG	279-296	GT	CTG
(GGA)	 AG	1409-1435	GT	GGG
(GCA)	 AG	1821-1835	GT	CAG
(GCA)	 AG	1860-1896	GT	GGG
-recovered GeneMark_model.109751_t, internal, 98, 255
-recovered GeneMark_model.109751_t, internal, 279, 296
-recovered GeneMark_model.109751_t, internal, 1409, 1435
-recovered GeneMark_model.109751_t, internal, 1821, 1835
-recovered GeneMark_model.109751_t, internal, 1860, 1896

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1917
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support