-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1805

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62835-T1
Couldn't classify 426, 638
Couldn't classify 1463, 1576
Sorry, prediction snap_scaffold_1805-snap.1-T1 fails validation.
(GAA)	 AG	426-638	GT	GGG
(GTG)	 AG	1463-1576	GT	TGG
-recovered snap_scaffold_1805-snap.1-T1, internal, 426, 638
-recovered snap_scaffold_1805-snap.1-T1, internal, 1463, 1576
Couldn't classify 426, 638
Couldn't classify 1463, 1576
Sorry, prediction Augustus_model.g41830.t1 fails validation.
(GAA)	 AG	426-638	GT	GGG
(GTG)	 AG	1463-1576	GT	TGG
-recovered Augustus_model.g41830.t1, internal, 426, 638
-recovered Augustus_model.g41830.t1, internal, 1463, 1576
Couldn't classify 425, 638
Couldn't classify 1463, 1575
Sorry, prediction pasa_asmbl_21161.p1 fails validation.
(GGA)	 CA	425-638	GT	GGG
(GTG)	 AG	1463-1575	GG	CTG
Couldn't classify 426, 638
Couldn't classify 1463, 1576
Sorry, prediction GeneMark_model.109750_t fails validation.
(GAA)	 AG	426-638	GT	GGG
(GTG)	 AG	1463-1576	GT	TGG
-recovered GeneMark_model.109750_t, internal, 426, 638
-recovered GeneMark_model.109750_t, internal, 1463, 1576

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1918
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support