-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1801

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 306, 395
Sorry, prediction GeneMark_model.109746_t fails validation.
(GCA)	 AG	306-395	GC	AAG
(AAG)	 AG	420-512	GT	CCG
(AGA)	 AG	627-786	AG	AGA
-recovered GeneMark_model.109746_t, terminal, 627, 786
-recovered GeneMark_model.109746_t, internal, 306, 395
-recovered GeneMark_model.109746_t, internal, 420, 512

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 301, 309
Sorry, prediction GeneMark_model.109747_t fails validation.
(ACA)	 AG	301-309	GC	CTG
(GAA)	 AG	333-341	GT	GGG
(AGA)	 AG	375-386	GT	ACG
(AGA)	 AG	419-496	GT	AGG
(AGA)	 AG	517-525	GT	GGG
(AGA)	 AG	554-578	GT	ATG
(GGC)	 AG	666-683	CC	GAC
-recovered GeneMark_model.109747_t, terminal, 666, 683
-recovered GeneMark_model.109747_t, internal, 301, 309
-recovered GeneMark_model.109747_t, internal, 333, 341
-recovered GeneMark_model.109747_t, internal, 375, 386
-recovered GeneMark_model.109747_t, internal, 419, 496
-recovered GeneMark_model.109747_t, internal, 517, 525
-recovered GeneMark_model.109747_t, internal, 554, 578

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1927
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support