-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1800

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 191, 219
Sorry, prediction GeneMark_model.109745_t fails validation.
(GGC)	 AG	191-219	GT	AGG
(GGG)	 AG	1064-1191	GT	AGG
(CCC)	 AG	1298-1360	AC	AAA
-recovered GeneMark_model.109745_t, terminal, 191, 219
-recovered GeneMark_model.109745_t, terminal, 1298, 1360
-recovered GeneMark_model.109745_t, internal, 191, 219
-recovered GeneMark_model.109745_t, internal, 1064, 1191
Couldn't classify 1836, 1892
Sorry, prediction snap_scaffold_1800-snap.1-T1 fails validation.
(ATG)	 GC	373-416	GT	AGG
(AGT)	 AG	1020-1191	GT	AGG
(TTG)	 AG	1836-1892	GT	TTG
-recovered snap_scaffold_1800-snap.1-T1, initial, 373, 416
-recovered snap_scaffold_1800-snap.1-T1, internal, 1020, 1191
-recovered snap_scaffold_1800-snap.1-T1, internal, 1836, 1892
Couldn't classify 1020, 1200
Sorry, prediction GlimmerHMM_glimmerT_62834-T1 fails validation.
(ATG)	 GC	373-396	GT	AGG
(AGT)	 AG	1020-1200	GT	AGG
-recovered GlimmerHMM_glimmerT_62834-T1, initial, 373, 396
-recovered GlimmerHMM_glimmerT_62834-T1, internal, 1020, 1200

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1927
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support