-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_180

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4130, 4423
Sorry, prediction Augustus_model.g40874.t1 fails validation.
(CCC)	 AG	4130-4423	GT	TGG
(CCC)	 AG	4967-5037	GA	GAG
-recovered Augustus_model.g40874.t1, terminal, 4967, 5037
-recovered Augustus_model.g40874.t1, internal, 4130, 4423
Valid prediction for GeneMark_model.106848_t
Couldn't classify 9939, 10186
Sorry, prediction snap_scaffold_180-snap.3-T1 fails validation.
(ATG)	 CG	9311-9376	GT	CGG
(GCC)	 AG	9670-9675	GT	CGG
(ATG)	 AG	9939-10186	GT	CAG
-recovered snap_scaffold_180-snap.3-T1, initial, 9311, 9376
-recovered snap_scaffold_180-snap.3-T1, initial, 9939, 10186
-recovered snap_scaffold_180-snap.3-T1, internal, 9670, 9675
-recovered snap_scaffold_180-snap.3-T1, internal, 9939, 10186
Couldn't classify 44, 124
Sorry, prediction GeneMark_model.106844_t fails validation.
(AGA)	 AG	44-124	GT	GAG
(AGA)	 AG	152-248	CA	GAC
-recovered GeneMark_model.106844_t, terminal, 152, 248
-recovered GeneMark_model.106844_t, internal, 44, 124
Valid prediction for GlimmerHMM_glimmerT_61459-T1
Couldn't classify 9939, 10186
Sorry, prediction GlimmerHMM_glimmerT_61460-T1 fails validation.
(ATG)	 AG	8863-8931	GT	AGG
(ATG)	 AG	9939-10186	GT	CAG
-recovered GlimmerHMM_glimmerT_61460-T1, initial, 8863, 8931
-recovered GlimmerHMM_glimmerT_61460-T1, initial, 9939, 10186
-recovered GlimmerHMM_glimmerT_61460-T1, internal, 8863, 8931
-recovered GlimmerHMM_glimmerT_61460-T1, internal, 9939, 10186
Valid prediction for GeneMark_model.106846_t
Valid prediction for snap_scaffold_180-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3483, 3733
Couldn't classify 5682, 6281
Sorry, prediction snap_scaffold_180-snap.2-T1 fails validation.
(ACA)	 AG	3483-3733	GT	AGG
(GAG)	 AG	5682-6281	GT	AGG
-recovered snap_scaffold_180-snap.2-T1, internal, 3483, 3733
-recovered snap_scaffold_180-snap.2-T1, internal, 5682, 6281
Valid prediction for GeneMark_model.106847_t
Valid prediction for GeneMark_model.106845_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8345, rend_intergenic: 4183  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 10463
-exon list size: 73


building trellis

1.3    
2.7    
4.0    
5.3    
6.7    
8.0    
9.3    
10.7    
12.0    
13.3    
14.7    
16.0    
17.3    
18.7    
20.0    
21.3    
22.7    
24.0    
25.3    
26.7    
28.0    
29.3    
30.7    
32.0    
33.3    
34.7    
36.0    
37.3    
38.7    
40.0    
41.3    
42.7    
44.0    
45.3    
46.7    
48.0    
49.3    
50.7    
52.0    
53.3    
54.7    
56.0    
57.3    
58.7    
60.0    
61.3    
62.7    
64.0    
65.3    
66.7    
68.0    
69.3    
70.7    
72.0    
73.3    
74.7    
76.0    
77.3    
78.7    
80.0    
81.3    
82.7    
84.0    
85.3    
86.7    
88.0    
89.3    
90.7    
92.0    
93.3    
94.7    
96.0    
97.3    
98.7    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 8345, rend_intergenic: 4183  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support