-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_18/scaffold_18_9504971-9706911

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.76005_t
Valid prediction for GeneMark_model.75961_t
Valid prediction for snap_scaffold_18-snap.2036-T1
Valid prediction for Augustus_model.g29435.t1
Valid prediction for GlimmerHMM_glimmerT_43952-T1
Valid prediction for snap_scaffold_18-snap.2024-T1
Valid prediction for GeneMark_model.75992_t
Valid prediction for GeneMark_model.76011_t
Valid prediction for snap_scaffold_18-snap.2064-T1
Valid prediction for GeneMark_model.76001_t
Valid prediction for snap_scaffold_18-snap.2056-T1
Valid prediction for snap_scaffold_18-snap.2057-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_43948-T1
Valid prediction for snap_scaffold_18-snap.2062-T1
Valid prediction for snap_scaffold_18-snap.2055-T1
Valid prediction for GeneMark_model.75990_t
Valid prediction for snap_scaffold_18-snap.2038-T1
Valid prediction for GlimmerHMM_glimmerT_43946-T1
Valid prediction for GeneMark_model.76007_t
Valid prediction for GeneMark_model.75955_t
Valid prediction for GeneMark_model.75982_t
Valid prediction for GeneMark_model.75993_t
Valid prediction for snap_scaffold_18-snap.2030-T1
Valid prediction for snap_scaffold_18-snap.2046-T1
Valid prediction for snap_scaffold_18-snap.2028-T1
Valid prediction for GlimmerHMM_glimmerT_43949-T1
Valid prediction for GeneMark_model.76009_t
Valid prediction for snap_scaffold_18-snap.2042-T1
Valid prediction for snap_scaffold_18-snap.2053-T1
Valid prediction for snap_scaffold_18-snap.2072-T1
Valid prediction for snap_scaffold_18-snap.2048-T1
Valid prediction for GeneMark_model.75958_t
Valid prediction for GeneMark_model.76000_t
Valid prediction for snap_scaffold_18-snap.2034-T1
Valid prediction for GeneMark_model.75951_t
Valid prediction for snap_scaffold_18-snap.2059-T1
Valid prediction for GlimmerHMM_glimmerT_43955-T1
Valid prediction for snap_scaffold_18-snap.2071-T1
Valid prediction for GeneMark_model.75999_t
Valid prediction for GeneMark_model.76006_t
Valid prediction for GeneMark_model.75972_t
Valid prediction for GeneMark_model.75997_t
Valid prediction for snap_scaffold_18-snap.2049-T1
Valid prediction for GlimmerHMM_glimmerT_43957-T1
Valid prediction for GeneMark_model.75985_t
Valid prediction for GeneMark_model.75980_t
Valid prediction for GeneMark_model.75952_t
Valid prediction for GeneMark_model.76015_t
Valid prediction for GeneMark_model.75969_t
Valid prediction for GeneMark_model.75977_t
Valid prediction for snap_scaffold_18-snap.2070-T1
Valid prediction for GeneMark_model.75964_t
Valid prediction for GeneMark_model.75949_t
Valid prediction for Augustus_model.g29440.t1
Valid prediction for snap_scaffold_18-snap.2066-T1
Valid prediction for GeneMark_model.75968_t
Valid prediction for snap_scaffold_18-snap.2061-T1
Valid prediction for GeneMark_model.75995_t
Valid prediction for snap_scaffold_18-snap.2044-T1
Valid prediction for GeneMark_model.75966_t
Valid prediction for snap_scaffold_18-snap.2027-T1
Valid prediction for snap_scaffold_18-snap.2058-T1
Valid prediction for GeneMark_model.75988_t
Valid prediction for GeneMark_model.76017_t
Valid prediction for GeneMark_model.75978_t
Valid prediction for GeneMark_model.76003_t
Valid prediction for GeneMark_model.75986_t
Valid prediction for GeneMark_model.76018_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.75960_t
Valid prediction for snap_scaffold_18-snap.2069-T1
Valid prediction for GeneMark_model.75979_t
Valid prediction for CodingQuarry_transcript_23825-T1
Valid prediction for snap_scaffold_18-snap.2067-T1
Valid prediction for GeneMark_model.75971_t
Valid prediction for GlimmerHMM_glimmerT_43956-T1
Valid prediction for GeneMark_model.75953_t
Valid prediction for GeneMark_model.75996_t
Valid prediction for snap_scaffold_18-snap.2065-T1
Couldn't classify 47733, 48173
Sorry, prediction pasa_asmbl_20107.p1 fails validation.
(GAG)	 AG	47733-48173	TC	GTT
Valid prediction for Augustus_model.g29443.t1
Valid prediction for snap_scaffold_18-snap.2039-T1
Valid prediction for snap_scaffold_18-snap.2041-T1
Valid prediction for GlimmerHMM_glimmerT_43961-T1
Valid prediction for GeneMark_model.76013_t
Valid prediction for snap_scaffold_18-snap.2029-T1
Valid prediction for GlimmerHMM_glimmerT_43959-T1
Valid prediction for snap_scaffold_18-snap.2035-T1
Valid prediction for Augustus_model.g29441.t1
Valid prediction for GeneMark_model.75957_t
Valid prediction for Augustus_model.g29436.t1
Valid prediction for snap_scaffold_18-snap.2033-T1
Valid prediction for GeneMark_model.75981_t
Valid prediction for Augustus_model.g29439.t1
Valid prediction for GlimmerHMM_glimmerT_43954-T1
Valid prediction for snap_scaffold_18-snap.2073-T1
Valid prediction for GlimmerHMM_glimmerT_43947-T1
Valid prediction for GeneMark_model.76002_t
Valid prediction for GeneMark_model.76012_t
Valid prediction for snap_scaffold_18-snap.2050-T1
Couldn't classify 42618, 42755
Couldn't classify 46344, 46458
Sorry, prediction pasa_asmbl_20108.p1 fails validation.
(GTG)	 AG	42618-42755	GT	AGG
(CGC)	 AG	43215-43357	GT	AGG
(GTC)	 AG	46344-46458	AG	AGA
-recovered pasa_asmbl_20108.p1, internal, 42618, 42755
-recovered pasa_asmbl_20108.p1, internal, 43215, 43357
Valid prediction for GeneMark_model.76010_t
Couldn't classify 20751, 21207
Sorry, prediction pasa_asmbl_20110.p1 fails validation.
(TCC)	 TC	20751-21207	GT	AGG
(ACC)	 AG	22970-23071	GT	AGG
(ACA)	 AG	24047-24170	GT	GGG
(GGT)	 AG	24280-24289	AC	AGA
-recovered pasa_asmbl_20110.p1, terminal, 24280, 24289
-recovered pasa_asmbl_20110.p1, internal, 22970, 23071
-recovered pasa_asmbl_20110.p1, internal, 24047, 24170
Valid prediction for GeneMark_model.76008_t
Valid prediction for GlimmerHMM_glimmerT_43951-T1
Valid prediction for GeneMark_model.75963_t
Valid prediction for snap_scaffold_18-snap.2032-T1
Valid prediction for Augustus_model.g29437.t1
Valid prediction for GlimmerHMM_glimmerT_43953-T1
Valid prediction for GeneMark_model.75967_t
Valid prediction for GeneMark_model.75965_t
Valid prediction for snap_scaffold_18-snap.2037-T1
Valid prediction for snap_scaffold_18-snap.2045-T1
Valid prediction for GeneMark_model.75974_t
Valid prediction for GeneMark_model.75970_t
Valid prediction for GeneMark_model.75962_t
Valid prediction for GeneMark_model.76016_t
Valid prediction for GeneMark_model.76004_t
Valid prediction for snap_scaffold_18-snap.2063-T1
Valid prediction for GeneMark_model.75956_t
Valid prediction for GeneMark_model.75950_t
Valid prediction for snap_scaffold_18-snap.2060-T1
Valid prediction for snap_scaffold_18-snap.2040-T1
Valid prediction for CodingQuarry_transcript_23824-T1
Valid prediction for GeneMark_model.75984_t
Valid prediction for snap_scaffold_18-snap.2051-T1
Valid prediction for Augustus_model.g29442.t1
Valid prediction for Augustus_model.g29438.t1
Valid prediction for GeneMark_model.75976_t
Valid prediction for snap_scaffold_18-snap.2031-T1
Valid prediction for snap_scaffold_18-snap.2026-T1
Valid prediction for GeneMark_model.75954_t
Valid prediction for GeneMark_model.75987_t
Valid prediction for GlimmerHMM_glimmerT_43960-T1
Valid prediction for GeneMark_model.75973_t
Valid prediction for GeneMark_model.75989_t
Valid prediction for GeneMark_model.75994_t
Valid prediction for snap_scaffold_18-snap.2047-T1
Valid prediction for GeneMark_model.75975_t
Valid prediction for snap_scaffold_18-snap.2054-T1
Valid prediction for GeneMark_model.76014_t
Valid prediction for GeneMark_model.75959_t
Valid prediction for snap_scaffold_18-snap.2052-T1
Couldn't classify 13671, 13834
Couldn't classify 20270, 20552
Sorry, prediction pasa_asmbl_20114.p1 fails validation.
(CTC)	 TC	13671-13834	GT	AGG
(TGC)	 AG	15654-15720	GT	GGG
(AAG)	 AG	15829-15906	GT	AGG
(GAG)	 AG	15985-16083	GT	TGG
(GAT)	 AG	18302-18387	GT	AGG
(TCA)	 AG	20270-20552	TC	CGT
-recovered pasa_asmbl_20114.p1, internal, 15654, 15720
-recovered pasa_asmbl_20114.p1, internal, 15829, 15906
-recovered pasa_asmbl_20114.p1, internal, 15985, 16083
-recovered pasa_asmbl_20114.p1, internal, 18302, 18387
Valid prediction for snap_scaffold_18-snap.2025-T1
Valid prediction for GeneMark_model.75991_t
Valid prediction for GeneMark_model.75983_t
Valid prediction for snap_scaffold_18-snap.2068-T1
Valid prediction for snap_scaffold_18-snap.2043-T1
Valid prediction for GeneMark_model.76019_t
Valid prediction for GeneMark_model.75998_t
Valid prediction for GlimmerHMM_glimmerT_43958-T1
Valid prediction for GlimmerHMM_glimmerT_43950-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 22706, rend_intergenic: 17427  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27509, rend_intergenic: 22913  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41867, rend_intergenic: 28745  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57635, rend_intergenic: 52596  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63471, rend_intergenic: 60271  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73209, rend_intergenic: 65907  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80939, rend_intergenic: 75075  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89769, rend_intergenic: 85074  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95997, rend_intergenic: 95760  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98454, rend_intergenic: 96705  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112458, rend_intergenic: 102833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140638, rend_intergenic: 124244  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146269, rend_intergenic: 145187  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149539, rend_intergenic: 146376  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163494, rend_intergenic: 154387  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167686, rend_intergenic: 165187  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172989, rend_intergenic: 167856  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191101, rend_intergenic: 177603  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199126, rend_intergenic: 192880  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 201941
-exon list size: 811


building trellis

0.1    
0.2    
0.4    
0.5    
0.6    
0.7    
0.9    
1.0    
1.1    
1.2    
1.4    
1.5    
1.6    
1.7    
1.8    
2.0    
2.1    
2.2    
2.3    
2.5    
2.6    
2.7    
2.8    
3.0    
3.1    
3.2    
3.3    
3.4    
3.6    
3.7    
3.8    
3.9    
4.1    
4.2    
4.3    
4.4    
4.6    
4.7    
4.8    
4.9    
5.0    
5.2    
5.3    
5.4    
5.5    
5.7    
5.8    
5.9    
6.0    
6.2    
6.3    
6.4    
6.5    
6.6    
6.8    
6.9    
7.0    
7.1    
7.3    
7.4    
7.5    
7.6    
7.7    
7.9    
8.0    
8.1    
8.2    
8.4    
8.5    
8.6    
8.7    
8.9    
9.0    
9.1    
9.2    
9.3    
9.5    
9.6    
9.7    
9.8    
10.0    
10.1    
10.2    
10.3    
10.5    
10.6    
10.7    
10.8    
10.9    
11.1    
11.2    
11.3    
11.4    
11.6    
11.7    
11.8    
11.9    
12.1    
12.2    
12.3    
12.4    
12.5    
12.7    
12.8    
12.9    
13.0    
13.2    
13.3    
13.4    
13.5    
13.7    
13.8    
13.9    
14.0    
14.1    
14.3    
14.4    
14.5    
14.6    
14.8    
14.9    
15.0    
15.1    
15.3    
15.4    
15.5    
15.6    
15.7    
15.9    
16.0    
16.1    
16.2    
16.4    
16.5    
16.6    
16.7    
16.9    
17.0    
17.1    
17.2    
17.3    
17.5    
17.6    
17.7    
17.8    
18.0    
18.1    
18.2    
18.3    
18.5    
18.6    
18.7    
18.8    
18.9    
19.1    
19.2    
19.3    
19.4    
19.6    
19.7    
19.8    
19.9    
20.0    
20.2    
20.3    
20.4    
20.5    
20.7    
20.8    
20.9    
21.0    
21.2    
21.3    
21.4    
21.5    
21.6    
21.8    
21.9    
22.0    
22.1    
22.3    
22.4    
22.5    
22.6    
22.8    
22.9    
23.0    
23.1    
23.2    
23.4    
23.5    
23.6    
23.7    
23.9    
24.0    
24.1    
24.2    
24.4    
24.5    
24.6    
24.7    
24.8    
25.0    
25.1    
25.2    
25.3    
25.5    
25.6    
25.7    
25.8    
26.0    
26.1    
26.2    
26.3    
26.4    
26.6    
26.7    
26.8    
26.9    
27.1    
27.2    
27.3    
27.4    
27.6    
27.7    
27.8    
27.9    
28.0    
28.2    
28.3    
28.4    
28.5    
28.7    
28.8    
28.9    
29.0    
29.2    
29.3    
29.4    
29.5    
29.6    
29.8    
29.9    
30.0    
30.1    
30.3    
30.4    
30.5    
30.6    
30.8    
30.9    
31.0    
31.1    
31.2    
31.4    
31.5    
31.6    
31.7    
31.9    
32.0    
32.1    
32.2    
32.3    
32.5    
32.6    
32.7    
32.8    
33.0    
33.1    
33.2    
33.3    
33.5    
33.6    
33.7    
33.8    
33.9    
34.1    
34.2    
34.3    
34.4    
34.6    
34.7    
34.8    
34.9    
35.1    
35.2    
35.3    
35.4    
35.5    
35.7    
35.8    
35.9    
36.0    
36.2    
36.3    
36.4    
36.5    
36.7    
36.8    
36.9    
37.0    
37.1    
37.3    
37.4    
37.5    
37.6    
37.8    
37.9    
38.0    
38.1    
38.3    
38.4    
38.5    
38.6    
38.7    
38.9    
39.0    
39.1    
39.2    
39.4    
39.5    
39.6    
39.7    
39.9    
40.0    
40.1    
40.2    
40.3    
40.5    
40.6    
40.7    
40.8    
41.0    
41.1    
41.2    
41.3    
41.5    
41.6    
41.7    
41.8    
41.9    
42.1    
42.2    
42.3    
42.4    
42.6    
42.7    
42.8    
42.9    
43.1    
43.2    
43.3    
43.4    
43.5    
43.7    
43.8    
43.9    
44.0    
44.2    
44.3    
44.4    
44.5    
44.6    
44.8    
44.9    
45.0    
45.1    
45.3    
45.4    
45.5    
45.6    
45.8    
45.9    
46.0    
46.1    
46.2    
46.4    
46.5    
46.6    
46.7    
46.9    
47.0    
47.1    
47.2    
47.4    
47.5    
47.6    
47.7    
47.8    
48.0    
48.1    
48.2    
48.3    
48.5    
48.6    
48.7    
48.8    
49.0    
49.1    
49.2    
49.3    
49.4    
49.6    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.4    
50.6    
50.7    
50.8    
50.9    
51.0    
51.2    
51.3    
51.4    
51.5    
51.7    
51.8    
51.9    
52.0    
52.2    
52.3    
52.4    
52.5    
52.6    
52.8    
52.9    
53.0    
53.1    
53.3    
53.4    
53.5    
53.6    
53.8    
53.9    
54.0    
54.1    
54.2    
54.4    
54.5    
54.6    
54.7    
54.9    
55.0    
55.1    
55.2    
55.4    
55.5    
55.6    
55.7    
55.8    
56.0    
56.1    
56.2    
56.3    
56.5    
56.6    
56.7    
56.8    
56.9    
57.1    
57.2    
57.3    
57.4    
57.6    
57.7    
57.8    
57.9    
58.1    
58.2    
58.3    
58.4    
58.5    
58.7    
58.8    
58.9    
59.0    
59.2    
59.3    
59.4    
59.5    
59.7    
59.8    
59.9    
60.0    
60.1    
60.3    
60.4    
60.5    
60.6    
60.8    
60.9    
61.0    
61.1    
61.3    
61.4    
61.5    
61.6    
61.7    
61.9    
62.0    
62.1    
62.2    
62.4    
62.5    
62.6    
62.7    
62.9    
63.0    
63.1    
63.2    
63.3    
63.5    
63.6    
63.7    
63.8    
64.0    
64.1    
64.2    
64.3    
64.5    
64.6    
64.7    
64.8    
64.9    
65.1    
65.2    
65.3    
65.4    
65.6    
65.7    
65.8    
65.9    
66.1    
66.2    
66.3    
66.4    
66.5    
66.7    
66.8    
66.9    
67.0    
67.2    
67.3    
67.4    
67.5    
67.7    
67.8    
67.9    
68.0    
68.1    
68.3    
68.4    
68.5    
68.6    
68.8    
68.9    
69.0    
69.1    
69.2    
69.4    
69.5    
69.6    
69.7    
69.9    
70.0    
70.1    
70.2    
70.4    
70.5    
70.6    
70.7    
70.8    
71.0    
71.1    
71.2    
71.3    
71.5    
71.6    
71.7    
71.8    
72.0    
72.1    
72.2    
72.3    
72.4    
72.6    
72.7    
72.8    
72.9    
73.1    
73.2    
73.3    
73.4    
73.6    
73.7    
73.8    
73.9    
74.0    
74.2    
74.3    
74.4    
74.5    
74.7    
74.8    
74.9    
75.0    
75.2    
75.3    
75.4    
75.5    
75.6    
75.8    
75.9    
76.0    
76.1    
76.3    
76.4    
76.5    
76.6    
76.8    
76.9    
77.0    
77.1    
77.2    
77.4    
77.5    
77.6    
77.7    
77.9    
78.0    
78.1    
78.2    
78.4    
78.5    
78.6    
78.7    
78.8    
79.0    
79.1    
79.2    
79.3    
79.5    
79.6    
79.7    
79.8    
80.0    
80.1    
80.2    
80.3    
80.4    
80.6    
80.7    
80.8    
80.9    
81.1    
81.2    
81.3    
81.4    
81.5    
81.7    
81.8    
81.9    
82.0    
82.2    
82.3    
82.4    
82.5    
82.7    
82.8    
82.9    
83.0    
83.1    
83.3    
83.4    
83.5    
83.6    
83.8    
83.9    
84.0    
84.1    
84.3    
84.4    
84.5    
84.6    
84.7    
84.9    
85.0    
85.1    
85.2    
85.4    
85.5    
85.6    
85.7    
85.9    
86.0    
86.1    
86.2    
86.3    
86.5    
86.6    
86.7    
86.8    
87.0    
87.1    
87.2    
87.3    
87.5    
87.6    
87.7    
87.8    
87.9    
88.1    
88.2    
88.3    
88.4    
88.6    
88.7    
88.8    
88.9    
89.1    
89.2    
89.3    
89.4    
89.5    
89.7    
89.8    
89.9    
90.0    
90.2    
90.3    
90.4    
90.5    
90.7    
90.8    
90.9    
91.0    
91.1    
91.3    
91.4    
91.5    
91.6    
91.8    
91.9    
92.0    
92.1    
92.3    
92.4    
92.5    
92.6    
92.7    
92.9    
93.0    
93.1    
93.2    
93.4    
93.5    
93.6    
93.7    
93.8    
94.0    
94.1    
94.2    
94.3    
94.5    
94.6    
94.7    
94.8    
95.0    
95.1    
95.2    
95.3    
95.4    
95.6    
95.7    
95.8    
95.9    
96.1    
96.2    
96.3    
96.4    
96.6    
96.7    
96.8    
96.9    
97.0    
97.2    
97.3    
97.4    
97.5    
97.7    
97.8    
97.9    
98.0    
98.2    
98.3    
98.4    
98.5    
98.6    
98.8    
98.9    
99.0    
99.1    
99.3    
99.4    
99.5    
99.6    
99.8    
99.9    
-found 39 predictions from path traversal
Error with prediction: snap lend_intergenic: 22706, rend_intergenic: 17427  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27509, rend_intergenic: 22913  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41867, rend_intergenic: 28745  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57635, rend_intergenic: 52596  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63471, rend_intergenic: 60271  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73209, rend_intergenic: 65907  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80939, rend_intergenic: 75075  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89769, rend_intergenic: 85074  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95997, rend_intergenic: 95760  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98454, rend_intergenic: 96705  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112458, rend_intergenic: 102833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140638, rend_intergenic: 124244  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146269, rend_intergenic: 145187  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149539, rend_intergenic: 146376  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163494, rend_intergenic: 154387  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167686, rend_intergenic: 165187  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172989, rend_intergenic: 167856  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191101, rend_intergenic: 177603  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199126, rend_intergenic: 192880  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11884
-exon list size: 35


building trellis

2.7    
5.4    
8.1    
10.8    
13.5    
16.2    
18.9    
21.6    
24.3    
27.0    
29.7    
32.4    
35.1    
37.8    
40.5    
43.2    
45.9    
48.6    
51.4    
54.1    
56.8    
59.5    
62.2    
64.9    
67.6    
70.3    
73.0    
75.7    
78.4    
81.1    
83.8    
86.5    
89.2    
91.9    
94.6    
97.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11698
-exon list size: 33


building trellis

2.9    
5.7    
8.6    
11.4    
14.3    
17.1    
20.0    
22.9    
25.7    
28.6    
31.4    
34.3    
37.1    
40.0    
42.9    
45.7    
48.6    
51.4    
54.3    
57.1    
60.0    
62.9    
65.7    
68.6    
71.4    
74.3    
77.1    
80.0    
82.9    
85.7    
88.6    
91.4    
94.3    
97.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support