-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_18/scaffold_18_943639-1146981

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g28551.t1
Valid prediction for GeneMark_model.73739_t
Valid prediction for GeneMark_model.73765_t
Valid prediction for snap_scaffold_18-snap.215-T1
Valid prediction for Augustus_model.g28549.t1
Valid prediction for snap_scaffold_18-snap.211-T1
Valid prediction for GlimmerHMM_glimmerT_42675-T1
Valid prediction for snap_scaffold_18-snap.213-T1
Valid prediction for GeneMark_model.73737_t
Valid prediction for GlimmerHMM_glimmerT_42663-T1
Valid prediction for GlimmerHMM_glimmerT_42671-T1
Valid prediction for Augustus_model.g28552.t1
Valid prediction for GeneMark_model.73723_t
Valid prediction for GeneMark_model.73767_t
Valid prediction for GeneMark_model.73741_t
Valid prediction for Augustus_model.g28554.t1
Valid prediction for Augustus_model.g28547.t1
Valid prediction for snap_scaffold_18-snap.203-T1
Valid prediction for GeneMark_model.73730_t
Valid prediction for Augustus_model.g28542.t1
Valid prediction for snap_scaffold_18-snap.184-T1
Valid prediction for snap_scaffold_18-snap.174-T1
Valid prediction for GlimmerHMM_glimmerT_42676-T1
Valid prediction for GeneMark_model.73727_t
Valid prediction for GeneMark_model.73733_t
Valid prediction for snap_scaffold_18-snap.218-T1
Valid prediction for GeneMark_model.73749_t
Valid prediction for GeneMark_model.73780_t
Valid prediction for snap_scaffold_18-snap.199-T1
Valid prediction for snap_scaffold_18-snap.208-T1
Valid prediction for snap_scaffold_18-snap.173-T1
Valid prediction for snap_scaffold_18-snap.172-T1
Valid prediction for snap_scaffold_18-snap.180-T1
Valid prediction for snap_scaffold_18-snap.200-T1
Valid prediction for Augustus_model.g28541.t1
Valid prediction for GeneMark_model.73751_t
Valid prediction for GeneMark_model.73747_t
Valid prediction for snap_scaffold_18-snap.205-T1
Valid prediction for GeneMark_model.73771_t
Valid prediction for snap_scaffold_18-snap.189-T1
Valid prediction for snap_scaffold_18-snap.185-T1
Valid prediction for GlimmerHMM_glimmerT_42669-T1
Valid prediction for GeneMark_model.73745_t
Valid prediction for GlimmerHMM_glimmerT_42653-T1
Valid prediction for GlimmerHMM_glimmerT_42668-T1
Valid prediction for snap_scaffold_18-snap.214-T1
Valid prediction for GeneMark_model.73761_t
Valid prediction for GlimmerHMM_glimmerT_42658-T1
Valid prediction for GlimmerHMM_glimmerT_42659-T1
Valid prediction for GeneMark_model.73773_t
Valid prediction for GeneMark_model.73759_t
Valid prediction for snap_scaffold_18-snap.194-T1
Valid prediction for GlimmerHMM_glimmerT_42673-T1
Valid prediction for GeneMark_model.73726_t
Valid prediction for GeneMark_model.73743_t
Valid prediction for snap_scaffold_18-snap.192-T1
Valid prediction for GeneMark_model.73768_t
Valid prediction for GeneMark_model.73756_t
Valid prediction for snap_scaffold_18-snap.196-T1
Valid prediction for GlimmerHMM_glimmerT_42664-T1
Valid prediction for GeneMark_model.73778_t
Valid prediction for GlimmerHMM_glimmerT_42654-T1
Valid prediction for snap_scaffold_18-snap.179-T1
Valid prediction for GeneMark_model.73735_t
Valid prediction for snap_scaffold_18-snap.187-T1
Valid prediction for GeneMark_model.73764_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.73774_t
Valid prediction for GlimmerHMM_glimmerT_42666-T1
Valid prediction for GlimmerHMM_glimmerT_42674-T1
Valid prediction for Augustus_model.g28545.t1
Valid prediction for GeneMark_model.73758_t
Valid prediction for snap_scaffold_18-snap.181-T1
Valid prediction for GeneMark_model.73776_t
Valid prediction for snap_scaffold_18-snap.209-T1
Valid prediction for GeneMark_model.73744_t
Valid prediction for snap_scaffold_18-snap.191-T1
Valid prediction for snap_scaffold_18-snap.202-T1
Valid prediction for snap_scaffold_18-snap.186-T1
Valid prediction for GeneMark_model.73740_t
Valid prediction for GeneMark_model.73746_t
Valid prediction for GeneMark_model.73753_t
Valid prediction for GeneMark_model.73777_t
Valid prediction for GlimmerHMM_glimmerT_42656-T1
Valid prediction for GlimmerHMM_glimmerT_42661-T1
Valid prediction for GeneMark_model.73754_t
Valid prediction for GeneMark_model.73763_t
Valid prediction for snap_scaffold_18-snap.188-T1
Valid prediction for GlimmerHMM_glimmerT_42655-T1
Valid prediction for Augustus_model.g28544.t1
Valid prediction for GeneMark_model.73732_t
Valid prediction for GeneMark_model.73757_t
Valid prediction for Augustus_model.g28546.t1
Valid prediction for GlimmerHMM_glimmerT_42662-T1
Valid prediction for snap_scaffold_18-snap.193-T1
Valid prediction for GeneMark_model.73738_t
Valid prediction for snap_scaffold_18-snap.182-T1
Valid prediction for GeneMark_model.73752_t
Valid prediction for GlimmerHMM_glimmerT_42665-T1
Valid prediction for Augustus_model.g28543.t1
Valid prediction for GeneMark_model.73755_t
Valid prediction for GeneMark_model.73779_t
Valid prediction for snap_scaffold_18-snap.183-T1
Valid prediction for snap_scaffold_18-snap.216-T1
Valid prediction for snap_scaffold_18-snap.195-T1
Valid prediction for Augustus_model.g28548.t1
Valid prediction for snap_scaffold_18-snap.176-T1
Valid prediction for snap_scaffold_18-snap.207-T1
Valid prediction for snap_scaffold_18-snap.197-T1
Valid prediction for GeneMark_model.73769_t
Valid prediction for snap_scaffold_18-snap.212-T1
Valid prediction for GeneMark_model.73742_t
Valid prediction for GeneMark_model.73762_t
Valid prediction for GeneMark_model.73728_t
Valid prediction for GlimmerHMM_glimmerT_42677-T1
Valid prediction for snap_scaffold_18-snap.177-T1
Valid prediction for GeneMark_model.73760_t
Valid prediction for Augustus_model.g28550.t1
Valid prediction for GeneMark_model.73729_t
Valid prediction for GeneMark_model.73724_t
Valid prediction for snap_scaffold_18-snap.190-T1
Valid prediction for snap_scaffold_18-snap.175-T1
Valid prediction for GlimmerHMM_glimmerT_42660-T1
Valid prediction for GeneMark_model.73748_t
Valid prediction for snap_scaffold_18-snap.210-T1
Valid prediction for GeneMark_model.73750_t
Valid prediction for GeneMark_model.73734_t
Valid prediction for GeneMark_model.73766_t
Valid prediction for GeneMark_model.73731_t
Valid prediction for snap_scaffold_18-snap.198-T1
Valid prediction for GlimmerHMM_glimmerT_42670-T1
Valid prediction for GeneMark_model.73781_t
Valid prediction for snap_scaffold_18-snap.217-T1
Valid prediction for GlimmerHMM_glimmerT_42667-T1
Valid prediction for GlimmerHMM_glimmerT_42657-T1
Valid prediction for GeneMark_model.73770_t
Valid prediction for GeneMark_model.73772_t
Valid prediction for GlimmerHMM_glimmerT_42672-T1
Valid prediction for snap_scaffold_18-snap.201-T1
Valid prediction for GeneMark_model.73736_t
Valid prediction for snap_scaffold_18-snap.178-T1
Valid prediction for Augustus_model.g28553.t1
Valid prediction for snap_scaffold_18-snap.206-T1
Valid prediction for GeneMark_model.73775_t
Valid prediction for snap_scaffold_18-snap.204-T1
Valid prediction for GeneMark_model.73725_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 47023, rend_intergenic: 26867  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49755, rend_intergenic: 47520  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64579, rend_intergenic: 51366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67565, rend_intergenic: 65019  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74351, rend_intergenic: 72195  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78384, rend_intergenic: 77480  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80928, rend_intergenic: 80394  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84403, rend_intergenic: 83750  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93749, rend_intergenic: 88709  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100609, rend_intergenic: 95363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122285, rend_intergenic: 117535  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128156, rend_intergenic: 122567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139849, rend_intergenic: 135975  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141993, rend_intergenic: 140139  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143864, rend_intergenic: 142030  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145125, rend_intergenic: 143943  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158904, rend_intergenic: 145797  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161774, rend_intergenic: 159296  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171499, rend_intergenic: 166581  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183804, rend_intergenic: 181262  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194862, rend_intergenic: 191716  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201626, rend_intergenic: 195624  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 151331, rend_intergenic: 151328  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 203343
-exon list size: 730


building trellis

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97.3    
97.4    
97.5    
97.7    
97.8    
98.0    
98.1    
98.2    
98.4    
98.5    
98.6    
98.8    
98.9    
99.0    
99.2    
99.3    
99.5    
99.6    
99.7    
99.9    
-found 44 predictions from path traversal
Error with prediction: snap lend_intergenic: 47023, rend_intergenic: 26867  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49755, rend_intergenic: 47520  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64579, rend_intergenic: 51366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67565, rend_intergenic: 65019  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74351, rend_intergenic: 72195  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78384, rend_intergenic: 77480  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80928, rend_intergenic: 80394  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84403, rend_intergenic: 83750  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93749, rend_intergenic: 88709  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100609, rend_intergenic: 95363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122285, rend_intergenic: 117535  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128156, rend_intergenic: 122567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139849, rend_intergenic: 135975  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141993, rend_intergenic: 140139  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143864, rend_intergenic: 142030  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145125, rend_intergenic: 143943  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158904, rend_intergenic: 145797  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161774, rend_intergenic: 159296  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171499, rend_intergenic: 166581  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183804, rend_intergenic: 181262  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194862, rend_intergenic: 191716  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201626, rend_intergenic: 195624  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 151331, rend_intergenic: 151328  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 11 predictions persist after filtering for low support