-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_18/scaffold_18_725233-948990 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_42650-T1 Valid prediction for Augustus_model.g28539.t1 Couldn't classify 172802, 172978 Sorry, prediction pasa_asmbl_20358.p1 fails validation. (ATC) AA 172802-172978 GT GGG (AGC) AG 173097-173282 GT CTG (GCG) AG 173501-173640 GT AGG (GTC) AG 173712-173884 GT ATG (CCT) AG 173980-174096 GT CGG (TGG) AG 174179-174292 GT AGG (GTG) AG 174372-174570 GT AGG (GGT) AG 174669-174841 GT AGG (GTC) AG 174954-175065 GT AGG (GGG) AG 175193-175349 AA AAA add_exon() Sorry, pasa_asmbl_20358.p1 174669-174841-terminal-2 is invalid. -recovered pasa_asmbl_20358.p1, terminal, 174669, 174841 -recovered pasa_asmbl_20358.p1, terminal, 175193, 175349 -recovered pasa_asmbl_20358.p1, internal, 173097, 173282 -recovered pasa_asmbl_20358.p1, internal, 173501, 173640 -recovered pasa_asmbl_20358.p1, internal, 173712, 173884 -recovered pasa_asmbl_20358.p1, internal, 173980, 174096 -recovered pasa_asmbl_20358.p1, internal, 174179, 174292 -recovered pasa_asmbl_20358.p1, internal, 174372, 174570 -recovered pasa_asmbl_20358.p1, internal, 174669, 174841 -recovered pasa_asmbl_20358.p1, internal, 174954, 175065 Valid prediction for GeneMark_model.73680_t Valid prediction for Augustus_model.g28527.t1 Valid prediction for GlimmerHMM_glimmerT_42637-T1 Valid prediction for GlimmerHMM_glimmerT_42633-T1 Valid prediction for snap_scaffold_18-snap.139-T1 Valid prediction for snap_scaffold_18-snap.149-T1 Valid prediction for snap_scaffold_18-snap.155-T1 Sorry, intron length (7) is less than minimum required (10) Valid prediction for GeneMark_model.73704_t Valid prediction for snap_scaffold_18-snap.135-T1 Valid prediction for snap_scaffold_18-snap.162-T1 Valid prediction for GeneMark_model.73701_t Valid prediction for snap_scaffold_18-snap.132-T1 Valid prediction for snap_scaffold_18-snap.130-T1 Valid prediction for pasa_asmbl_20345.p1 Valid prediction for GeneMark_model.73681_t Valid prediction for GlimmerHMM_glimmerT_42629-T1 Valid prediction for GlimmerHMM_glimmerT_42646-T1 Valid prediction for snap_scaffold_18-snap.171-T1 Valid prediction for GeneMark_model.73682_t Valid prediction for GlimmerHMM_glimmerT_42634-T1 Valid prediction for Augustus_model.g28525.t1 Valid prediction for GeneMark_model.73693_t Valid prediction for snap_scaffold_18-snap.145-T1 Valid prediction for snap_scaffold_18-snap.128-T1 Valid prediction for Augustus_model.g28523.t1 Valid prediction for CodingQuarry_transcript_23602-T1 Valid prediction for GeneMark_model.73683_t Valid prediction for snap_scaffold_18-snap.141-T1 Valid prediction for GeneMark_model.73666_t Valid prediction for GlimmerHMM_glimmerT_42635-T1 Valid prediction for GeneMark_model.73707_t Valid prediction for GeneMark_model.73685_t Valid prediction for GeneMark_model.73711_t Valid prediction for GeneMark_model.73677_t Valid prediction for GlimmerHMM_glimmerT_42628-T1 Valid prediction for GeneMark_model.73719_t Valid prediction for GeneMark_model.73695_t Valid prediction for GeneMark_model.73714_t Valid prediction for GeneMark_model.73713_t Valid prediction for GlimmerHMM_glimmerT_42648-T1 Valid prediction for HiQ_model.g28530.t1 Valid prediction for GeneMark_model.73675_t Valid prediction for GeneMark_model.73689_t Valid prediction for snap_scaffold_18-snap.148-T1 Valid prediction for CodingQuarry_transcript_23603-T1 Couldn't classify 178759, 178832 Sorry, prediction pasa_asmbl_20359.p1 fails validation. (AGT) GC 178759-178832 GT TGG (TGG) AG 179453-179487 GT CAG (TCA) AG 179664-179795 GT CGG (CCC) AG 180058-180265 GT AGG (GAC) AG 180495-180638 GT AGG (GTC) AG 180849-180913 GT AGG (AGA) AG 181033-181188 GT CTG (CTG) AG 181353-181449 GT CTG (ATA) AG 181899-181902 AG AAA -recovered pasa_asmbl_20359.p1, terminal, 181899, 181902 -recovered pasa_asmbl_20359.p1, internal, 179453, 179487 -recovered pasa_asmbl_20359.p1, internal, 179664, 179795 -recovered pasa_asmbl_20359.p1, internal, 180058, 180265 -recovered pasa_asmbl_20359.p1, internal, 180495, 180638 -recovered pasa_asmbl_20359.p1, internal, 180849, 180913 -recovered pasa_asmbl_20359.p1, internal, 181033, 181188 -recovered pasa_asmbl_20359.p1, internal, 181353, 181449 Valid prediction for GlimmerHMM_glimmerT_42632-T1 Valid prediction for GeneMark_model.73697_t Valid prediction for GeneMark_model.73672_t Valid prediction for GeneMark_model.73679_t Valid prediction for snap_scaffold_18-snap.142-T1 Valid prediction for snap_scaffold_18-snap.167-T1 Valid prediction for snap_scaffold_18-snap.140-T1 Valid prediction for GlimmerHMM_glimmerT_42625-T1 Valid prediction for snap_scaffold_18-snap.143-T1 Valid prediction for GlimmerHMM_glimmerT_42643-T1 Valid prediction for Augustus_model.g28524.t1 Valid prediction for CodingQuarry_transcript_23601-T1 Valid prediction for GeneMark_model.73691_t Valid prediction for GeneMark_model.73720_t Valid prediction for Augustus_model.g28536.t1 Valid prediction for Augustus_model.g28533.t1 Valid prediction for GeneMark_model.73669_t Valid prediction for GlimmerHMM_glimmerT_42649-T1 Valid prediction for GlimmerHMM_glimmerT_42636-T1 Valid prediction for GlimmerHMM_glimmerT_42627-T1 Valid prediction for snap_scaffold_18-snap.127-T1 Couldn't classify 89609, 89693 Sorry, prediction pasa_asmbl_20347.p1 fails validation. (GTG) GT 89609-89693 GT AGG (CTG) AG 90069-90145 GT GGG (AAC) AG 90226-90324 GT AGG (ATT) AG 90801-90873 GT AGG (CTG) AG 91677-91780 GC GAG -recovered pasa_asmbl_20347.p1, terminal, 91677, 91780 -recovered pasa_asmbl_20347.p1, internal, 90069, 90145 -recovered pasa_asmbl_20347.p1, internal, 90226, 90324 -recovered pasa_asmbl_20347.p1, internal, 90801, 90873 -recovered pasa_asmbl_20347.p1, internal, 91677, 91780 Valid prediction for Augustus_model.g28526.t1 Valid prediction for snap_scaffold_18-snap.166-T1 Valid prediction for HiQ_model.g28538.t1 Valid prediction for snap_scaffold_18-snap.170-T1 Valid prediction for GeneMark_model.73702_t Valid prediction for snap_scaffold_18-snap.153-T1 Valid prediction for GeneMark_model.73709_t Valid prediction for snap_scaffold_18-snap.151-T1 Valid prediction for Augustus_model.g28522.t1 Valid prediction for HiQ_model.g28529.t1 Valid prediction for GeneMark_model.73716_t Valid prediction for pasa_asmbl_20352.p1 Valid prediction for snap_scaffold_18-snap.158-T1 Valid prediction for snap_scaffold_18-snap.159-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.73715_t Valid prediction for GlimmerHMM_glimmerT_42624-T1 Valid prediction for snap_scaffold_18-snap.161-T1 Valid prediction for GeneMark_model.73667_t Valid prediction for snap_scaffold_18-snap.157-T1 Valid prediction for HiQ_model.g28532.t1 Valid prediction for GlimmerHMM_glimmerT_42639-T1 Valid prediction for GeneMark_model.73710_t Valid prediction for GeneMark_model.73687_t Valid prediction for GeneMark_model.73670_t Couldn't classify 60716, 60803 Couldn't classify 62551, 62827 Sorry, prediction pasa_asmbl_19643.p1 fails validation. (GTG) AG 60716-60803 GT AGG (GCA) AG 61025-61334 GT GGG (GTT) AG 62551-62827 GT GGG -recovered pasa_asmbl_19643.p1, internal, 60716, 60803 -recovered pasa_asmbl_19643.p1, internal, 61025, 61334 -recovered pasa_asmbl_19643.p1, internal, 62551, 62827 Couldn't classify 63179, 63245 Sorry, prediction pasa_asmbl_19642.p1 fails validation. (CCC) CT 63179-63245 GT AGG (GTC) AG 63335-63388 GT CGG (CGG) AG 64173-64289 GT TGG (GTG) AG 64626-65003 GT GGG (GTC) AG 65114-65382 AG GAA -recovered pasa_asmbl_19642.p1, terminal, 65114, 65382 -recovered pasa_asmbl_19642.p1, internal, 63335, 63388 -recovered pasa_asmbl_19642.p1, internal, 64173, 64289 -recovered pasa_asmbl_19642.p1, internal, 64626, 65003 Valid prediction for snap_scaffold_18-snap.138-T1 Valid prediction for GeneMark_model.73696_t Valid prediction for snap_scaffold_18-snap.150-T1 Valid prediction for snap_scaffold_18-snap.144-T1 Valid prediction for GlimmerHMM_glimmerT_42652-T1 Valid prediction for GlimmerHMM_glimmerT_42630-T1 Valid prediction for GlimmerHMM_glimmerT_42642-T1 Valid prediction for Augustus_model.g28534.t1 Valid prediction for GlimmerHMM_glimmerT_42638-T1 Valid prediction for snap_scaffold_18-snap.126-T1 Valid prediction for snap_scaffold_18-snap.134-T1 Valid prediction for pasa_asmbl_19640.p1 Valid prediction for GeneMark_model.73668_t Valid prediction for snap_scaffold_18-snap.129-T1 Valid prediction for GlimmerHMM_glimmerT_42651-T1 Valid prediction for GeneMark_model.73674_t Valid prediction for snap_scaffold_18-snap.137-T1 Valid prediction for pasa_asmbl_19636.p1 Valid prediction for GlimmerHMM_glimmerT_42626-T1 Valid prediction for GeneMark_model.73673_t Valid prediction for GeneMark_model.73678_t Valid prediction for snap_scaffold_18-snap.152-T1 Valid prediction for HiQ_model.g28531.t1 Valid prediction for GeneMark_model.73717_t Valid prediction for GeneMark_model.73703_t Valid prediction for GeneMark_model.73700_t Valid prediction for GlimmerHMM_glimmerT_42641-T1 Valid prediction for Augustus_model.g28540.t1 Valid prediction for GeneMark_model.73688_t Valid prediction for GeneMark_model.73705_t Valid prediction for snap_scaffold_18-snap.133-T1 Valid prediction for snap_scaffold_18-snap.146-T1 Valid prediction for GeneMark_model.73699_t Valid prediction for snap_scaffold_18-snap.160-T1 Valid prediction for GlimmerHMM_glimmerT_42631-T1 Valid prediction for snap_scaffold_18-snap.131-T1 Valid prediction for GeneMark_model.73712_t Valid prediction for GeneMark_model.73698_t Valid prediction for GeneMark_model.73708_t Valid prediction for snap_scaffold_18-snap.136-T1 Valid prediction for snap_scaffold_18-snap.168-T1 Valid prediction for snap_scaffold_18-snap.154-T1 Valid prediction for GeneMark_model.73686_t Valid prediction for GeneMark_model.73692_t Valid prediction for snap_scaffold_18-snap.169-T1 Valid prediction for HiQ_model.g28537.t1 Couldn't classify 55453, 55572 Sorry, prediction pasa_asmbl_19644.p1 fails validation. (GTC) AT 55453-55572 GT TAG (GCT) AG 55674-55718 GT AGG (GAG) AG 56102-56265 GT ATG (GAT) AG 56769-56879 GT AGG (TTC) AG 58102-58388 GT AGG (GAA) AG 58544-58713 GT AGG (GTT) AG 59231-59347 GA GAG -recovered pasa_asmbl_19644.p1, terminal, 59231, 59347 -recovered pasa_asmbl_19644.p1, internal, 55674, 55718 -recovered pasa_asmbl_19644.p1, internal, 56102, 56265 -recovered pasa_asmbl_19644.p1, internal, 56769, 56879 -recovered pasa_asmbl_19644.p1, internal, 58102, 58388 -recovered pasa_asmbl_19644.p1, internal, 58544, 58713 Valid prediction for GlimmerHMM_glimmerT_42640-T1 Valid prediction for GlimmerHMM_glimmerT_42647-T1 Valid prediction for GeneMark_model.73718_t Valid prediction for GeneMark_model.73671_t Valid prediction for GeneMark_model.73694_t Valid prediction for Augustus_model.g28528.t1 Valid prediction for GeneMark_model.73706_t Valid prediction for GeneMark_model.73684_t Valid prediction for snap_scaffold_18-snap.164-T1 Valid prediction for GeneMark_model.73690_t Valid prediction for GlimmerHMM_glimmerT_42644-T1 Valid prediction for HiQ_model.g28535.t1 Valid prediction for GeneMark_model.73722_t Valid prediction for GlimmerHMM_glimmerT_42645-T1 Valid prediction for GeneMark_model.73676_t Valid prediction for GeneMark_model.73721_t Valid prediction for snap_scaffold_18-snap.165-T1 Couldn't classify 86061, 86080 Sorry, prediction pasa_asmbl_19641.p1 fails validation. (ATG) GG 81272-81362 GT AGG (ATT) AG 82147-82235 GT ACG (GTG) AG 83594-83834 GT AGG (ATA) AG 86061-86080 GG AAG -recovered pasa_asmbl_19641.p1, initial, 81272, 81362 -recovered pasa_asmbl_19641.p1, internal, 82147, 82235 -recovered pasa_asmbl_19641.p1, internal, 83594, 83834 Couldn't classify 112174, 112430 Sorry, prediction pasa_asmbl_19632.p1 fails validation. (TCA) TC 112174-112430 GT AGG (AGA) AG 112618-112756 GT AGG (ATT) AG 112984-113172 GT AGG (TTG) AG 113335-113463 GT TGG (AAA) AG 113566-113724 TC GAT -recovered pasa_asmbl_19632.p1, terminal, 113566, 113724 -recovered pasa_asmbl_19632.p1, internal, 112618, 112756 -recovered pasa_asmbl_19632.p1, internal, 112984, 113172 -recovered pasa_asmbl_19632.p1, internal, 113335, 113463 Valid prediction for snap_scaffold_18-snap.147-T1 Valid prediction for snap_scaffold_18-snap.163-T1 Valid prediction for CodingQuarry_transcript_23604-T1 Valid prediction for GeneMark_model.73665_t Valid prediction for snap_scaffold_18-snap.156-T1 Couldn't classify 45088, 45318 Sorry, prediction pasa_asmbl_19646.p1 fails validation. (ACG) AC 45088-45318 GT AGG (AAT) AG 45486-45580 GT GAG (GGA) AG 45696-45739 GT TGG (GTA) AG 45824-45946 GT AGG (GGT) AG 46050-46234 GT AGG (GAG) AG 46417-46465 GC AGG (TTG) AG 46597-46654 GT AGG (TGC) AG 46775-46895 GT AGG (ATG) AG 47036-47155 GT AGG (GAG) AG 47243-47342 GT AGG (GTA) AG 47482-47582 GT CGG (GGT) AG 47757-47819 CC GAC -recovered pasa_asmbl_19646.p1, initial, 47036, 47155 -recovered pasa_asmbl_19646.p1, terminal, 47757, 47819 -recovered pasa_asmbl_19646.p1, internal, 45486, 45580 -recovered pasa_asmbl_19646.p1, internal, 45696, 45739 -recovered pasa_asmbl_19646.p1, internal, 45824, 45946 -recovered pasa_asmbl_19646.p1, internal, 46050, 46234 -recovered pasa_asmbl_19646.p1, internal, 46417, 46465 -recovered pasa_asmbl_19646.p1, internal, 46597, 46654 -recovered pasa_asmbl_19646.p1, internal, 46775, 46895 -recovered pasa_asmbl_19646.p1, internal, 47036, 47155 -recovered pasa_asmbl_19646.p1, internal, 47243, 47342 -recovered pasa_asmbl_19646.p1, internal, 47482, 47582 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7185, rend_intergenic: 5118 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 13049, rend_intergenic: 8761 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 26295, rend_intergenic: 13572 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 33421, rend_intergenic: 27028 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 43549, rend_intergenic: 36753 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 79775, rend_intergenic: 66345 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 99629, rend_intergenic: 96791 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 108203, rend_intergenic: 102244 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 115626, rend_intergenic: 110198 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 129573, rend_intergenic: 126436 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 134797, rend_intergenic: 132343 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 142298, rend_intergenic: 136023 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 157720, rend_intergenic: 151238 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 162661, rend_intergenic: 159408 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 167684, rend_intergenic: 165880 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 175349, rend_intergenic: 172865 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 190180, rend_intergenic: 182382 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 192997, rend_intergenic: 191003 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 198744, rend_intergenic: 196457 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 208736, rend_intergenic: 201911 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 223758 -exon list size: 824 building trellis 0.1 0.2 0.4 0.5 0.6 0.7 0.8 1.0 1.1 1.2 1.3 1.5 1.6 1.7 1.8 1.9 2.1 2.2 2.3 2.4 2.5 2.7 2.8 2.9 3.0 3.1 3.3 3.4 3.5 3.6 3.8 3.9 4.0 4.1 4.2 4.4 4.5 4.6 4.7 4.8 5.0 5.1 5.2 5.3 5.4 5.6 5.7 5.8 5.9 6.1 6.2 6.3 6.4 6.5 6.7 6.8 6.9 7.0 7.1 7.3 7.4 7.5 7.6 7.7 7.9 8.0 8.1 8.2 8.4 8.5 8.6 8.7 8.8 9.0 9.1 9.2 9.3 9.4 9.6 9.7 9.8 9.9 10.0 10.2 10.3 10.4 10.5 10.7 10.8 10.9 11.0 11.1 11.3 11.4 11.5 11.6 11.7 11.9 12.0 12.1 12.2 12.3 12.5 12.6 12.7 12.8 13.0 13.1 13.2 13.3 13.4 13.6 13.7 13.8 13.9 14.0 14.2 14.3 14.4 14.5 14.6 14.8 14.9 15.0 15.1 15.3 15.4 15.5 15.6 15.7 15.9 16.0 16.1 16.2 16.3 16.5 16.6 16.7 16.8 16.9 17.1 17.2 17.3 17.4 17.6 17.7 17.8 17.9 18.0 18.2 18.3 18.4 18.5 18.6 18.8 18.9 19.0 19.1 19.2 19.4 19.5 19.6 19.7 19.9 20.0 20.1 20.2 20.3 20.5 20.6 20.7 20.8 20.9 21.1 21.2 21.3 21.4 21.5 21.7 21.8 21.9 22.0 22.2 22.3 22.4 22.5 22.6 22.8 22.9 23.0 23.1 23.2 23.4 23.5 23.6 23.7 23.8 24.0 24.1 24.2 24.3 24.5 24.6 24.7 24.8 24.9 25.1 25.2 25.3 25.4 25.5 25.7 25.8 25.9 26.0 26.2 26.3 26.4 26.5 26.6 26.8 26.9 27.0 27.1 27.2 27.4 27.5 27.6 27.7 27.8 28.0 28.1 28.2 28.3 28.5 28.6 28.7 28.8 28.9 29.1 29.2 29.3 29.4 29.5 29.7 29.8 29.9 30.0 30.1 30.3 30.4 30.5 30.6 30.8 30.9 31.0 31.1 31.2 31.4 31.5 31.6 31.7 31.8 32.0 32.1 32.2 32.3 32.4 32.6 32.7 32.8 32.9 33.1 33.2 33.3 33.4 33.5 33.7 33.8 33.9 34.0 34.1 34.3 34.4 34.5 34.6 34.7 34.9 35.0 35.1 35.2 35.4 35.5 35.6 35.7 35.8 36.0 36.1 36.2 36.3 36.4 36.6 36.7 36.8 36.9 37.0 37.2 37.3 37.4 37.5 37.7 37.8 37.9 38.0 38.1 38.3 38.4 38.5 38.6 38.7 38.9 39.0 39.1 39.2 39.3 39.5 39.6 39.7 39.8 40.0 40.1 40.2 40.3 40.4 40.6 40.7 40.8 40.9 41.0 41.2 41.3 41.4 41.5 41.6 41.8 41.9 42.0 42.1 42.3 42.4 42.5 42.6 42.7 42.9 43.0 43.1 43.2 43.3 43.5 43.6 43.7 43.8 43.9 44.1 44.2 44.3 44.4 44.6 44.7 44.8 44.9 45.0 45.2 45.3 45.4 45.5 45.6 45.8 45.9 46.0 46.1 46.2 46.4 46.5 46.6 46.7 46.9 47.0 47.1 47.2 47.3 47.5 47.6 47.7 47.8 47.9 48.1 48.2 48.3 48.4 48.5 48.7 48.8 48.9 49.0 49.2 49.3 49.4 49.5 49.6 49.8 49.9 50.0 50.1 50.2 50.4 50.5 50.6 50.7 50.8 51.0 51.1 51.2 51.3 51.5 51.6 51.7 51.8 51.9 52.1 52.2 52.3 52.4 52.5 52.7 52.8 52.9 53.0 53.1 53.3 53.4 53.5 53.6 53.8 53.9 54.0 54.1 54.2 54.4 54.5 54.6 54.7 54.8 55.0 55.1 55.2 55.3 55.4 55.6 55.7 55.8 55.9 56.1 56.2 56.3 56.4 56.5 56.7 56.8 56.9 57.0 57.1 57.3 57.4 57.5 57.6 57.7 57.9 58.0 58.1 58.2 58.4 58.5 58.6 58.7 58.8 59.0 59.1 59.2 59.3 59.4 59.6 59.7 59.8 59.9 60.0 60.2 60.3 60.4 60.5 60.7 60.8 60.9 61.0 61.1 61.3 61.4 61.5 61.6 61.7 61.9 62.0 62.1 62.2 62.3 62.5 62.6 62.7 62.8 63.0 63.1 63.2 63.3 63.4 63.6 63.7 63.8 63.9 64.0 64.2 64.3 64.4 64.5 64.6 64.8 64.9 65.0 65.1 65.3 65.4 65.5 65.6 65.7 65.9 66.0 66.1 66.2 66.3 66.5 66.6 66.7 66.8 66.9 67.1 67.2 67.3 67.4 67.6 67.7 67.8 67.9 68.0 68.2 68.3 68.4 68.5 68.6 68.8 68.9 69.0 69.1 69.2 69.4 69.5 69.6 69.7 69.9 70.0 70.1 70.2 70.3 70.5 70.6 70.7 70.8 70.9 71.1 71.2 71.3 71.4 71.5 71.7 71.8 71.9 72.0 72.2 72.3 72.4 72.5 72.6 72.8 72.9 73.0 73.1 73.2 73.4 73.5 73.6 73.7 73.8 74.0 74.1 74.2 74.3 74.5 74.6 74.7 74.8 74.9 75.1 75.2 75.3 75.4 75.5 75.7 75.8 75.9 76.0 76.2 76.3 76.4 76.5 76.6 76.8 76.9 77.0 77.1 77.2 77.4 77.5 77.6 77.7 77.8 78.0 78.1 78.2 78.3 78.5 78.6 78.7 78.8 78.9 79.1 79.2 79.3 79.4 79.5 79.7 79.8 79.9 80.0 80.1 80.3 80.4 80.5 80.6 80.8 80.9 81.0 81.1 81.2 81.4 81.5 81.6 81.7 81.8 82.0 82.1 82.2 82.3 82.4 82.6 82.7 82.8 82.9 83.1 83.2 83.3 83.4 83.5 83.7 83.8 83.9 84.0 84.1 84.3 84.4 84.5 84.6 84.7 84.9 85.0 85.1 85.2 85.4 85.5 85.6 85.7 85.8 86.0 86.1 86.2 86.3 86.4 86.6 86.7 86.8 86.9 87.0 87.2 87.3 87.4 87.5 87.7 87.8 87.9 88.0 88.1 88.3 88.4 88.5 88.6 88.7 88.9 89.0 89.1 89.2 89.3 89.5 89.6 89.7 89.8 90.0 90.1 90.2 90.3 90.4 90.6 90.7 90.8 90.9 91.0 91.2 91.3 91.4 91.5 91.6 91.8 91.9 92.0 92.1 92.3 92.4 92.5 92.6 92.7 92.9 93.0 93.1 93.2 93.3 93.5 93.6 93.7 93.8 93.9 94.1 94.2 94.3 94.4 94.6 94.7 94.8 94.9 95.0 95.2 95.3 95.4 95.5 95.6 95.8 95.9 96.0 96.1 96.2 96.4 96.5 96.6 96.7 96.9 97.0 97.1 97.2 97.3 97.5 97.6 97.7 97.8 97.9 98.1 98.2 98.3 98.4 98.5 98.7 98.8 98.9 99.0 99.2 99.3 99.4 99.5 99.6 99.8 99.9 -found 34 predictions from path traversal Error with prediction: snap lend_intergenic: 7185, rend_intergenic: 5118 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 13049, rend_intergenic: 8761 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 26295, rend_intergenic: 13572 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 33421, rend_intergenic: 27028 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 43549, rend_intergenic: 36753 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 79775, rend_intergenic: 66345 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 99629, rend_intergenic: 96791 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 108203, rend_intergenic: 102244 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 115626, rend_intergenic: 110198 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 129573, rend_intergenic: 126436 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 134797, rend_intergenic: 132343 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 142298, rend_intergenic: 136023 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 157720, rend_intergenic: 151238 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 162661, rend_intergenic: 159408 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 167684, rend_intergenic: 165880 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 175349, rend_intergenic: 172865 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 190180, rend_intergenic: 182382 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 192997, rend_intergenic: 191003 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 198744, rend_intergenic: 196457 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 208736, rend_intergenic: 201911 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 15 predictions persist after filtering for low support -building DP trellis -building trellis in range 208323 - 223758 -exon list size: 15 building trellis 5.9 11.8 17.6 23.5 29.4 35.3 41.2 47.1 52.9 58.8 64.7 70.6 76.5 82.4 88.2 94.1 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 208389 - 223758 -exon list size: 14 building trellis 6.2 12.5 18.8 25.0 31.2 37.5 43.8 50.0 56.2 62.5 68.8 75.0 81.2 87.5 93.8 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support