-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_18/scaffold_18_6534403-6637463

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_43533-T1
Valid prediction for Augustus_model.g29138.t1
Valid prediction for snap_scaffold_18-snap.1385-T1
Valid prediction for snap_scaffold_18-snap.1370-T1
Valid prediction for GeneMark_model.75146_t
Valid prediction for Augustus_model.g29135.t1
Valid prediction for GlimmerHMM_glimmerT_43534-T1
Valid prediction for GlimmerHMM_glimmerT_43526-T1
Valid prediction for snap_scaffold_18-snap.1367-T1
Valid prediction for Augustus_model.g29136.t1
Valid prediction for snap_scaffold_18-snap.1387-T1
Valid prediction for GeneMark_model.75131_t
Valid prediction for snap_scaffold_18-snap.1377-T1
Valid prediction for GeneMark_model.75134_t
Valid prediction for GlimmerHMM_glimmerT_43535-T1
Valid prediction for snap_scaffold_18-snap.1372-T1
Valid prediction for snap_scaffold_18-snap.1373-T1
Valid prediction for GeneMark_model.75152_t
Valid prediction for Augustus_model.g29130.t1
Valid prediction for snap_scaffold_18-snap.1369-T1
Valid prediction for GeneMark_model.75155_t
Valid prediction for GlimmerHMM_glimmerT_43530-T1
Valid prediction for GlimmerHMM_glimmerT_43529-T1
Valid prediction for snap_scaffold_18-snap.1375-T1
Valid prediction for snap_scaffold_18-snap.1376-T1
Valid prediction for GeneMark_model.75158_t
Valid prediction for Augustus_model.g29143.t1
Valid prediction for snap_scaffold_18-snap.1382-T1
Valid prediction for GeneMark_model.75149_t
Valid prediction for GeneMark_model.75151_t
Valid prediction for GeneMark_model.75144_t
Valid prediction for Augustus_model.g29133.t1
Valid prediction for GeneMark_model.75156_t
Valid prediction for GeneMark_model.75140_t
Valid prediction for Augustus_model.g29140.t1
Valid prediction for GlimmerHMM_glimmerT_43540-T1
Valid prediction for snap_scaffold_18-snap.1365-T1
Valid prediction for GeneMark_model.75143_t
Valid prediction for snap_scaffold_18-snap.1380-T1
Valid prediction for GlimmerHMM_glimmerT_43531-T1
Valid prediction for GlimmerHMM_glimmerT_43532-T1
Valid prediction for GeneMark_model.75137_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_43538-T1
Valid prediction for GeneMark_model.75136_t
Valid prediction for snap_scaffold_18-snap.1381-T1
Valid prediction for Augustus_model.g29131.t1
Valid prediction for Augustus_model.g29139.t1
Valid prediction for Augustus_model.g29137.t1
Valid prediction for GeneMark_model.75145_t
Valid prediction for snap_scaffold_18-snap.1384-T1
Valid prediction for GeneMark_model.75139_t
Valid prediction for GlimmerHMM_glimmerT_43536-T1
Valid prediction for snap_scaffold_18-snap.1364-T1
Valid prediction for snap_scaffold_18-snap.1371-T1
Valid prediction for GeneMark_model.75157_t
Valid prediction for GeneMark_model.75129_t
Valid prediction for GeneMark_model.75132_t
Valid prediction for GeneMark_model.75127_t
Valid prediction for snap_scaffold_18-snap.1374-T1
Valid prediction for GlimmerHMM_glimmerT_43537-T1
Valid prediction for GlimmerHMM_glimmerT_43525-T1
Valid prediction for Augustus_model.g29134.t1
Valid prediction for GlimmerHMM_glimmerT_43528-T1
Valid prediction for GeneMark_model.75142_t
Valid prediction for Augustus_model.g29132.t1
Valid prediction for snap_scaffold_18-snap.1378-T1
Valid prediction for GlimmerHMM_glimmerT_43539-T1
Valid prediction for GeneMark_model.75153_t
Valid prediction for snap_scaffold_18-snap.1366-T1
Valid prediction for Augustus_model.g29142.t1
Valid prediction for GeneMark_model.75138_t
Valid prediction for snap_scaffold_18-snap.1368-T1
Valid prediction for GeneMark_model.75154_t
Valid prediction for GeneMark_model.75141_t
Valid prediction for GeneMark_model.75133_t
Valid prediction for GeneMark_model.75148_t
Valid prediction for GlimmerHMM_glimmerT_43527-T1
Valid prediction for Augustus_model.g29141.t1
Valid prediction for snap_scaffold_18-snap.1383-T1
Valid prediction for GeneMark_model.75147_t
Valid prediction for GeneMark_model.75130_t
Valid prediction for snap_scaffold_18-snap.1386-T1
Valid prediction for snap_scaffold_18-snap.1379-T1
Valid prediction for GeneMark_model.75128_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 25266, rend_intergenic: 20590  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36093, rend_intergenic: 34370  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77590, rend_intergenic: 74801  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87405, rend_intergenic: 83481  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98291, rend_intergenic: 96411  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100892, rend_intergenic: 98925  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 103061
-exon list size: 366


building trellis

0.3    
0.5    
0.8    
1.1    
1.4    
1.6    
1.9    
2.2    
2.4    
2.7    
3.0    
3.3    
3.5    
3.8    
4.1    
4.3    
4.6    
4.9    
5.2    
5.4    
5.7    
6.0    
6.2    
6.5    
6.8    
7.1    
7.3    
7.6    
7.9    
8.2    
8.4    
8.7    
9.0    
9.2    
9.5    
9.8    
10.1    
10.3    
10.6    
10.9    
11.1    
11.4    
11.7    
12.0    
12.2    
12.5    
12.8    
13.0    
13.3    
13.6    
13.9    
14.1    
14.4    
14.7    
14.9    
15.2    
15.5    
15.8    
16.0    
16.3    
16.6    
16.8    
17.1    
17.4    
17.7    
17.9    
18.2    
18.5    
18.8    
19.0    
19.3    
19.6    
19.8    
20.1    
20.4    
20.7    
20.9    
21.2    
21.5    
21.7    
22.0    
22.3    
22.6    
22.8    
23.1    
23.4    
23.6    
23.9    
24.2    
24.5    
24.7    
25.0    
25.3    
25.5    
25.8    
26.1    
26.4    
26.6    
26.9    
27.2    
27.4    
27.7    
28.0    
28.3    
28.5    
28.8    
29.1    
29.3    
29.6    
29.9    
30.2    
30.4    
30.7    
31.0    
31.2    
31.5    
31.8    
32.1    
32.3    
32.6    
32.9    
33.2    
33.4    
33.7    
34.0    
34.2    
34.5    
34.8    
35.1    
35.3    
35.6    
35.9    
36.1    
36.4    
36.7    
37.0    
37.2    
37.5    
37.8    
38.0    
38.3    
38.6    
38.9    
39.1    
39.4    
39.7    
39.9    
40.2    
40.5    
40.8    
41.0    
41.3    
41.6    
41.8    
42.1    
42.4    
42.7    
42.9    
43.2    
43.5    
43.8    
44.0    
44.3    
44.6    
44.8    
45.1    
45.4    
45.7    
45.9    
46.2    
46.5    
46.7    
47.0    
47.3    
47.6    
47.8    
48.1    
48.4    
48.6    
48.9    
49.2    
49.5    
49.7    
50.0    
50.3    
50.5    
50.8    
51.1    
51.4    
51.6    
51.9    
52.2    
52.4    
52.7    
53.0    
53.3    
53.5    
53.8    
54.1    
54.3    
54.6    
54.9    
55.2    
55.4    
55.7    
56.0    
56.2    
56.5    
56.8    
57.1    
57.3    
57.6    
57.9    
58.2    
58.4    
58.7    
59.0    
59.2    
59.5    
59.8    
60.1    
60.3    
60.6    
60.9    
61.1    
61.4    
61.7    
62.0    
62.2    
62.5    
62.8    
63.0    
63.3    
63.6    
63.9    
64.1    
64.4    
64.7    
64.9    
65.2    
65.5    
65.8    
66.0    
66.3    
66.6    
66.8    
67.1    
67.4    
67.7    
67.9    
68.2    
68.5    
68.8    
69.0    
69.3    
69.6    
69.8    
70.1    
70.4    
70.7    
70.9    
71.2    
71.5    
71.7    
72.0    
72.3    
72.6    
72.8    
73.1    
73.4    
73.6    
73.9    
74.2    
74.5    
74.7    
75.0    
75.3    
75.5    
75.8    
76.1    
76.4    
76.6    
76.9    
77.2    
77.4    
77.7    
78.0    
78.3    
78.5    
78.8    
79.1    
79.3    
79.6    
79.9    
80.2    
80.4    
80.7    
81.0    
81.2    
81.5    
81.8    
82.1    
82.3    
82.6    
82.9    
83.2    
83.4    
83.7    
84.0    
84.2    
84.5    
84.8    
85.1    
85.3    
85.6    
85.9    
86.1    
86.4    
86.7    
87.0    
87.2    
87.5    
87.8    
88.0    
88.3    
88.6    
88.9    
89.1    
89.4    
89.7    
89.9    
90.2    
90.5    
90.8    
91.0    
91.3    
91.6    
91.8    
92.1    
92.4    
92.7    
92.9    
93.2    
93.5    
93.8    
94.0    
94.3    
94.6    
94.8    
95.1    
95.4    
95.7    
95.9    
96.2    
96.5    
96.7    
97.0    
97.3    
97.6    
97.8    
98.1    
98.4    
98.6    
98.9    
99.2    
99.5    
99.7    
-found 23 predictions from path traversal
Error with prediction: snap lend_intergenic: 25266, rend_intergenic: 20590  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36093, rend_intergenic: 34370  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77590, rend_intergenic: 74801  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87405, rend_intergenic: 83481  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98291, rend_intergenic: 96411  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100892, rend_intergenic: 98925  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support