-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_18/scaffold_18_6100878-6351235

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.75016_t
Valid prediction for GlimmerHMM_glimmerT_43494-T1
Couldn't classify 216183, 216186
Couldn't classify 217925, 218029
Sorry, prediction pasa_asmbl_20701.p1 fails validation.
(AAA)	 AC	216183-216186	GT	AAG
(AGT)	 AG	216396-216576	GT	AAG
(GTG)	 AG	216656-216749	GT	ATG
(GCT)	 AG	216841-216999	GT	AGG
(AGT)	 AG	217093-217188	GT	TGG
(GCA)	 AG	217362-217502	GT	CGG
(GAT)	 AG	217925-218029	GC	CGG
-recovered pasa_asmbl_20701.p1, internal, 216396, 216576
-recovered pasa_asmbl_20701.p1, internal, 216656, 216749
-recovered pasa_asmbl_20701.p1, internal, 216841, 216999
-recovered pasa_asmbl_20701.p1, internal, 217093, 217188
-recovered pasa_asmbl_20701.p1, internal, 217362, 217502
-recovered pasa_asmbl_20701.p1, internal, 217925, 218029
Valid prediction for snap_scaffold_18-snap.1301-T1
Valid prediction for Augustus_model.g29086.t1
Valid prediction for GeneMark_model.75021_t
Valid prediction for GeneMark_model.75036_t
Valid prediction for Augustus_model.g29096.t1
Valid prediction for snap_scaffold_18-snap.1294-T1
Valid prediction for GlimmerHMM_glimmerT_43485-T1
Valid prediction for GlimmerHMM_glimmerT_43468-T1
Valid prediction for snap_scaffold_18-snap.1286-T1
Valid prediction for snap_scaffold_18-snap.1321-T1
Valid prediction for GeneMark_model.75061_t
Valid prediction for Augustus_model.g29093.t1
Valid prediction for snap_scaffold_18-snap.1310-T1
Valid prediction for Augustus_model.g29103.t1
Valid prediction for snap_scaffold_18-snap.1319-T1
Valid prediction for Augustus_model.g29094.t1
Valid prediction for snap_scaffold_18-snap.1312-T1
Valid prediction for GeneMark_model.74989_t
Valid prediction for Augustus_model.g29102.t1
Valid prediction for GeneMark_model.75023_t
Valid prediction for GlimmerHMM_glimmerT_43484-T1
Valid prediction for GeneMark_model.75050_t
Valid prediction for Augustus_model.g29090.t1
Valid prediction for GlimmerHMM_glimmerT_43463-T1
Valid prediction for GeneMark_model.75043_t
Couldn't classify 163032, 163127
Couldn't classify 165451, 165547
Sorry, prediction pasa_asmbl_20696.p1 fails validation.
(GAT)	 TA	163032-163127	GT	GGG
(GTC)	 AG	163235-163313	GT	AGG
(GAC)	 AG	165282-165360	GT	TGG
(GAA)	 AG	165451-165547	AC	ACA
-recovered pasa_asmbl_20696.p1, internal, 163235, 163313
-recovered pasa_asmbl_20696.p1, internal, 165282, 165360
Valid prediction for GeneMark_model.75001_t
Valid prediction for GlimmerHMM_glimmerT_43469-T1
Valid prediction for Augustus_model.g29085.t1
Valid prediction for GeneMark_model.75052_t
Valid prediction for GeneMark_model.75041_t
Valid prediction for GeneMark_model.75065_t
Valid prediction for GeneMark_model.75006_t
Valid prediction for GlimmerHMM_glimmerT_43458-T1
Valid prediction for GeneMark_model.75014_t
Valid prediction for Augustus_model.g29106.t1
Valid prediction for snap_scaffold_18-snap.1291-T1
Valid prediction for GeneMark_model.75062_t
Valid prediction for GlimmerHMM_glimmerT_43474-T1
Valid prediction for GlimmerHMM_glimmerT_43466-T1
Valid prediction for snap_scaffold_18-snap.1323-T1
Valid prediction for GlimmerHMM_glimmerT_43471-T1
Valid prediction for snap_scaffold_18-snap.1329-T1
Valid prediction for Augustus_model.g29088.t1
Valid prediction for snap_scaffold_18-snap.1283-T1
Valid prediction for GlimmerHMM_glimmerT_43461-T1
Couldn't classify 218306, 218389
Couldn't classify 218865, 218978
Sorry, prediction pasa_asmbl_20702.p1 fails validation.
(CCA)	 AC	218306-218389	GT	AGG
(ACC)	 AG	218478-218555	GT	AGG
(GTG)	 AG	218674-218763	GT	TTG
(CAA)	 AG	218865-218978	GG	AAG
-recovered pasa_asmbl_20702.p1, internal, 218478, 218555
-recovered pasa_asmbl_20702.p1, internal, 218674, 218763
Valid prediction for HiQ_model.g29099.t1
Valid prediction for GeneMark_model.75022_t
Valid prediction for GeneMark_model.74998_t
Couldn't classify 167361, 167429
Couldn't classify 170480, 170528
Sorry, prediction pasa_asmbl_20698.p1 fails validation.
(CTC)	 GT	167361-167429	GT	AGG
(GCT)	 AG	168210-168374	GT	CGG
(TAC)	 AG	168488-168592	GT	TGG
(CTC)	 AG	168765-168910	GT	TGG
(GAC)	 AG	169007-169068	GT	AGG
(GTG)	 AG	169691-169877	GT	AGG
(GGC)	 AG	170480-170528	GT	TGG
-recovered pasa_asmbl_20698.p1, internal, 168210, 168374
-recovered pasa_asmbl_20698.p1, internal, 168488, 168592
-recovered pasa_asmbl_20698.p1, internal, 168765, 168910
-recovered pasa_asmbl_20698.p1, internal, 169007, 169068
-recovered pasa_asmbl_20698.p1, internal, 169691, 169877
-recovered pasa_asmbl_20698.p1, internal, 170480, 170528
Valid prediction for GlimmerHMM_glimmerT_43480-T1
Valid prediction for GlimmerHMM_glimmerT_43492-T1
Valid prediction for GeneMark_model.75045_t
Valid prediction for GlimmerHMM_glimmerT_43491-T1
Valid prediction for GeneMark_model.75012_t
Valid prediction for GeneMark_model.75030_t
Valid prediction for GeneMark_model.75047_t
Valid prediction for GlimmerHMM_glimmerT_43465-T1
Valid prediction for GeneMark_model.75032_t
Valid prediction for GlimmerHMM_glimmerT_43488-T1
Valid prediction for GlimmerHMM_glimmerT_43481-T1
Valid prediction for Augustus_model.g29105.t1
Valid prediction for GlimmerHMM_glimmerT_43489-T1
Valid prediction for snap_scaffold_18-snap.1297-T1
Valid prediction for GeneMark_model.75028_t
Valid prediction for snap_scaffold_18-snap.1290-T1
Valid prediction for GeneMark_model.74986_t
Valid prediction for GeneMark_model.75008_t
Valid prediction for GlimmerHMM_glimmerT_43459-T1
Valid prediction for GeneMark_model.75057_t
Couldn't classify 145672, 145672
Sorry, prediction CodingQuarry_transcript_23732-T1 fails validation.
(AGT)	 AA	145672-145672	GT	AAG
(TGA)	 AG	145816-145887	GT	AAG
(ATG)	 AG	146531-146631	GT	AGG
(GAC)	 AG	146840-146905	GT	TGG
(GTG)	 AG	147233-147329	GT	ACG
(GTT)	 AG	147732-147803	GT	GAG
(AGA)	 AG	148030-148146	GT	AGG
(GCT)	 AG	148402-148565	GT	AGG
(ATG)	 AG	148671-148867	GT	AAG
(AGG)	 AG	149169-149361	GT	AGG
(GTG)	 AG	149486-149524	GT	ACG
(TGC)	 AG	149748-149864	GA	AAG
add_exon() Sorry, CodingQuarry_transcript_23732-T1 146531-146631-initial-1 is invalid.
-recovered CodingQuarry_transcript_23732-T1, initial, 146531, 146631
-recovered CodingQuarry_transcript_23732-T1, initial, 148671, 148867
-recovered CodingQuarry_transcript_23732-T1, terminal, 149748, 149864
-recovered CodingQuarry_transcript_23732-T1, internal, 145816, 145887
-recovered CodingQuarry_transcript_23732-T1, internal, 146531, 146631
-recovered CodingQuarry_transcript_23732-T1, internal, 146840, 146905
-recovered CodingQuarry_transcript_23732-T1, internal, 147233, 147329
-recovered CodingQuarry_transcript_23732-T1, internal, 147732, 147803
-recovered CodingQuarry_transcript_23732-T1, internal, 148030, 148146
-recovered CodingQuarry_transcript_23732-T1, internal, 148402, 148565
-recovered CodingQuarry_transcript_23732-T1, internal, 148671, 148867
-recovered CodingQuarry_transcript_23732-T1, internal, 149169, 149361
-recovered CodingQuarry_transcript_23732-T1, internal, 149486, 149524
Valid prediction for GeneMark_model.75059_t
Valid prediction for GeneMark_model.74993_t
Valid prediction for GeneMark_model.75010_t
Valid prediction for GeneMark_model.75025_t
Valid prediction for Augustus_model.g29091.t1
Couldn't classify 219945, 219992
Couldn't classify 224224, 224361
Sorry, prediction pasa_asmbl_20703.p1 fails validation.
(AGG)	 AG	219945-219992	GT	TTG
(AAG)	 AG	220372-220567	GT	AGG
(ACT)	 AG	220673-220768	GT	AAG
(AGA)	 AG	221028-221085	GT	AAG
(TTG)	 AG	221159-221232	GT	AGG
(CCA)	 AG	221337-221462	GT	TGG
(AGA)	 AG	221586-221659	GT	GAG
(ACA)	 AG	221882-221953	GT	AGG
(CAT)	 AG	222057-222176	GT	GGG
(GAA)	 AG	222293-222337	GT	TGG
(TTG)	 AG	222525-222608	GT	AGG
(GTC)	 AG	222903-223073	GT	AGG
(GGC)	 AG	223168-223320	GT	AGG
(TCT)	 AG	223423-223488	GT	AGG
(GAC)	 AG	223698-223874	GT	TGG
(GTG)	 AG	224034-224123	GT	TTG
(GGT)	 AG	224224-224361	GA	TTG
-recovered pasa_asmbl_20703.p1, internal, 219945, 219992
-recovered pasa_asmbl_20703.p1, internal, 220372, 220567
-recovered pasa_asmbl_20703.p1, internal, 220673, 220768
-recovered pasa_asmbl_20703.p1, internal, 221028, 221085
-recovered pasa_asmbl_20703.p1, internal, 221159, 221232
-recovered pasa_asmbl_20703.p1, internal, 221337, 221462
-recovered pasa_asmbl_20703.p1, internal, 221586, 221659
-recovered pasa_asmbl_20703.p1, internal, 221882, 221953
-recovered pasa_asmbl_20703.p1, internal, 222057, 222176
-recovered pasa_asmbl_20703.p1, internal, 222293, 222337
-recovered pasa_asmbl_20703.p1, internal, 222525, 222608
-recovered pasa_asmbl_20703.p1, internal, 222903, 223073
-recovered pasa_asmbl_20703.p1, internal, 223168, 223320
-recovered pasa_asmbl_20703.p1, internal, 223423, 223488
-recovered pasa_asmbl_20703.p1, internal, 223698, 223874
-recovered pasa_asmbl_20703.p1, internal, 224034, 224123
Valid prediction for GeneMark_model.74995_t
Valid prediction for GeneMark_model.75034_t
Valid prediction for GeneMark_model.75003_t
Valid prediction for GeneMark_model.75054_t
Valid prediction for GeneMark_model.75058_t
Valid prediction for GlimmerHMM_glimmerT_43493-T1
Valid prediction for GeneMark_model.75048_t
Valid prediction for Augustus_model.g29100.t1
Valid prediction for snap_scaffold_18-snap.1303-T1
Valid prediction for snap_scaffold_18-snap.1316-T1
Valid prediction for GlimmerHMM_glimmerT_43460-T1
Valid prediction for snap_scaffold_18-snap.1306-T1
Valid prediction for GeneMark_model.74991_t
Valid prediction for GlimmerHMM_glimmerT_43475-T1
Valid prediction for GeneMark_model.75039_t
Valid prediction for snap_scaffold_18-snap.1308-T1
Valid prediction for Augustus_model.g29092.t1
Valid prediction for Augustus_model.g29104.t1
Valid prediction for pasa_asmbl_20705.p1
Valid prediction for snap_scaffold_18-snap.1322-T1
Valid prediction for pasa_asmbl_20694.p1
Valid prediction for snap_scaffold_18-snap.1320-T1
Valid prediction for GeneMark_model.74985_t
Valid prediction for snap_scaffold_18-snap.1305-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.74990_t
Valid prediction for GlimmerHMM_glimmerT_43490-T1
Valid prediction for Augustus_model.g29087.t1
Valid prediction for snap_scaffold_18-snap.1299-T1
Valid prediction for snap_scaffold_18-snap.1317-T1
Valid prediction for GeneMark_model.75063_t
Valid prediction for GeneMark_model.74994_t
Valid prediction for GeneMark_model.75000_t
Valid prediction for snap_scaffold_18-snap.1285-T1
Valid prediction for snap_scaffold_18-snap.1284-T1
Valid prediction for GlimmerHMM_glimmerT_43464-T1
Valid prediction for GeneMark_model.75018_t
Valid prediction for GeneMark_model.75038_t
Valid prediction for snap_scaffold_18-snap.1298-T1
Valid prediction for GeneMark_model.75053_t
Valid prediction for GlimmerHMM_glimmerT_43496-T1
Couldn't classify 111222, 111362
Sorry, prediction pasa_asmbl_19925.p1 fails validation.
(CTT)	 TT	111222-111362	GT	AGG
(CCG)	 AG	112788-112895	GT	AGG
(TTC)	 AG	113040-113183	GT	AGG
(GGC)	 AG	115225-115530	CG	AGC
-recovered pasa_asmbl_19925.p1, terminal, 115225, 115530
-recovered pasa_asmbl_19925.p1, internal, 112788, 112895
-recovered pasa_asmbl_19925.p1, internal, 113040, 113183
Valid prediction for GeneMark_model.75027_t
Valid prediction for snap_scaffold_18-snap.1296-T1
Valid prediction for GlimmerHMM_glimmerT_43487-T1
Valid prediction for GeneMark_model.75015_t
Valid prediction for GeneMark_model.75037_t
Valid prediction for GlimmerHMM_glimmerT_43478-T1
Valid prediction for GlimmerHMM_glimmerT_43462-T1
Valid prediction for GeneMark_model.75042_t
Valid prediction for GeneMark_model.75031_t
Valid prediction for snap_scaffold_18-snap.1304-T1
Valid prediction for GeneMark_model.75044_t
Valid prediction for GeneMark_model.75009_t
Valid prediction for snap_scaffold_18-snap.1292-T1
Valid prediction for GeneMark_model.74996_t
Valid prediction for snap_scaffold_18-snap.1311-T1
Valid prediction for snap_scaffold_18-snap.1309-T1
Valid prediction for GlimmerHMM_glimmerT_43457-T1
Valid prediction for GeneMark_model.75046_t
Valid prediction for GeneMark_model.74992_t
Valid prediction for snap_scaffold_18-snap.1281-T1
Valid prediction for snap_scaffold_18-snap.1318-T1
Valid prediction for snap_scaffold_18-snap.1307-T1
Valid prediction for GeneMark_model.75020_t
Valid prediction for snap_scaffold_18-snap.1293-T1
Valid prediction for GlimmerHMM_glimmerT_43486-T1
Valid prediction for snap_scaffold_18-snap.1324-T1
Valid prediction for GeneMark_model.75007_t
Valid prediction for GeneMark_model.75064_t
Valid prediction for GlimmerHMM_glimmerT_43479-T1
Valid prediction for GlimmerHMM_glimmerT_43476-T1
Valid prediction for Augustus_model.g29101.t1
Valid prediction for GeneMark_model.75026_t
Valid prediction for snap_scaffold_18-snap.1282-T1
Valid prediction for snap_scaffold_18-snap.1326-T1
Valid prediction for GeneMark_model.75029_t
Valid prediction for GlimmerHMM_glimmerT_43470-T1
Valid prediction for snap_scaffold_18-snap.1287-T1
Valid prediction for snap_scaffold_18-snap.1295-T1
Valid prediction for snap_scaffold_18-snap.1288-T1
Valid prediction for GeneMark_model.75035_t
Valid prediction for GlimmerHMM_glimmerT_43482-T1
Valid prediction for GeneMark_model.74988_t
Valid prediction for snap_scaffold_18-snap.1327-T1
Valid prediction for GeneMark_model.75040_t
Valid prediction for GeneMark_model.74987_t
Valid prediction for GeneMark_model.75060_t
Valid prediction for GlimmerHMM_glimmerT_43495-T1
Valid prediction for snap_scaffold_18-snap.1300-T1
Valid prediction for GeneMark_model.75049_t
Valid prediction for snap_scaffold_18-snap.1313-T1
Valid prediction for GeneMark_model.75055_t
Valid prediction for GlimmerHMM_glimmerT_43467-T1
Valid prediction for GeneMark_model.75067_t
Valid prediction for Augustus_model.g29107.t1
Valid prediction for GlimmerHMM_glimmerT_43455-T1
Valid prediction for GeneMark_model.75051_t
Valid prediction for GeneMark_model.75066_t
Valid prediction for GeneMark_model.75033_t
Valid prediction for GeneMark_model.75011_t
Valid prediction for Augustus_model.g29097.t1
Couldn't classify 561, 706
Sorry, prediction pasa_asmbl_19931.p1 fails validation.
(AGG)	 GC	561-706	GT	AAG
(GTC)	 AG	2259-2367	GT	AGG
(AAG)	 AG	2738-2840	GT	GGG
(GAG)	 AG	3107-3242	GT	AGG
(GGC)	 AG	3339-3483	GT	TGG
(GCC)	 AG	3858-3995	GT	AGG
(GCG)	 AG	4939-5061	GT	AGG
(AGC)	 AG	6540-6617	GT	AGG
(GGG)	 AG	6774-6899	GC	AGG
-recovered pasa_asmbl_19931.p1, terminal, 6774, 6899
-recovered pasa_asmbl_19931.p1, internal, 2259, 2367
-recovered pasa_asmbl_19931.p1, internal, 2738, 2840
-recovered pasa_asmbl_19931.p1, internal, 3107, 3242
-recovered pasa_asmbl_19931.p1, internal, 3339, 3483
-recovered pasa_asmbl_19931.p1, internal, 3858, 3995
-recovered pasa_asmbl_19931.p1, internal, 4939, 5061
-recovered pasa_asmbl_19931.p1, internal, 6540, 6617
-recovered pasa_asmbl_19931.p1, internal, 6774, 6899
Valid prediction for snap_scaffold_18-snap.1315-T1
Valid prediction for GlimmerHMM_glimmerT_43472-T1
Valid prediction for GeneMark_model.75005_t
Valid prediction for GlimmerHMM_glimmerT_43473-T1
Valid prediction for snap_scaffold_18-snap.1314-T1
Valid prediction for Augustus_model.g29098.t1
Valid prediction for GeneMark_model.74997_t
Valid prediction for GeneMark_model.75002_t
Valid prediction for Augustus_model.g29089.t1
Valid prediction for GeneMark_model.75024_t
Valid prediction for snap_scaffold_18-snap.1289-T1
Valid prediction for snap_scaffold_18-snap.1302-T1
Valid prediction for GeneMark_model.75068_t
Valid prediction for GeneMark_model.75017_t
Valid prediction for CodingQuarry_transcript_23731-T1
Valid prediction for snap_scaffold_18-snap.1325-T1
Valid prediction for GeneMark_model.75004_t
Valid prediction for Augustus_model.g29095.t1
Valid prediction for Augustus_model.g29108.t1
Valid prediction for GeneMark_model.75013_t
Valid prediction for GeneMark_model.75056_t
Valid prediction for GlimmerHMM_glimmerT_43477-T1
Valid prediction for GlimmerHMM_glimmerT_43483-T1
Valid prediction for GlimmerHMM_glimmerT_43456-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 34882, rend_intergenic: 27625  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57891, rend_intergenic: 40269  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66037, rend_intergenic: 58041  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76602, rend_intergenic: 66775  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83363, rend_intergenic: 79721  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88177, rend_intergenic: 83567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109508, rend_intergenic: 89409  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125708, rend_intergenic: 109575  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129090, rend_intergenic: 127564  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138946, rend_intergenic: 134829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142046, rend_intergenic: 141269  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149864, rend_intergenic: 146780  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154806, rend_intergenic: 153381  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157401, rend_intergenic: 155762  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159778, rend_intergenic: 159395  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163017, rend_intergenic: 159930  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172468, rend_intergenic: 163063  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176685, rend_intergenic: 172482  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182719, rend_intergenic: 176975  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187176, rend_intergenic: 185336  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 228483, rend_intergenic: 211154  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 250358
-exon list size: 1236


building trellis

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30.3    
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30.5    
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31.0    
31.1    
31.2    
31.3    
31.3    
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31.7    
31.8    
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32.1    
32.1    
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32.3    
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32.5    
32.6    
32.6    
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32.8    
32.9    
33.0    
33.0    
33.1    
33.2    
33.3    
33.4    
33.4    
33.5    
33.6    
33.7    
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33.8    
33.9    
34.0    
34.1    
34.2    
34.2    
34.3    
34.4    
34.5    
34.6    
34.7    
34.7    
34.8    
34.9    
35.0    
35.1    
35.1    
35.2    
35.3    
35.4    
35.5    
35.5    
35.6    
35.7    
35.8    
35.9    
35.9    
36.0    
36.1    
36.2    
36.3    
36.3    
36.4    
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36.6    
36.7    
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36.8    
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37.0    
37.1    
37.2    
37.2    
37.3    
37.4    
37.5    
37.6    
37.6    
37.7    
37.8    
37.9    
38.0    
38.0    
38.1    
38.2    
38.3    
38.4    
38.4    
38.5    
38.6    
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38.8    
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38.9    
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39.2    
39.3    
39.3    
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39.7    
39.7    
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40.1    
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40.5    
40.5    
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40.9    
41.0    
41.0    
41.1    
41.2    
41.3    
41.4    
41.4    
41.5    
41.6    
41.7    
41.8    
41.8    
41.9    
42.0    
42.1    
42.2    
42.2    
42.3    
42.4    
42.5    
42.6    
42.6    
42.7    
42.8    
42.9    
43.0    
43.1    
43.1    
43.2    
43.3    
43.4    
43.5    
43.5    
43.6    
43.7    
43.8    
43.9    
43.9    
44.0    
44.1    
44.2    
44.3    
44.3    
44.4    
44.5    
44.6    
44.7    
44.7    
44.8    
44.9    
45.0    
45.1    
45.2    
45.2    
45.3    
45.4    
45.5    
45.6    
45.6    
45.7    
45.8    
45.9    
46.0    
46.0    
46.1    
46.2    
46.3    
46.4    
46.4    
46.5    
46.6    
46.7    
46.8    
46.8    
46.9    
47.0    
47.1    
47.2    
47.3    
47.3    
47.4    
47.5    
47.6    
47.7    
47.7    
47.8    
47.9    
48.0    
48.1    
48.1    
48.2    
48.3    
48.4    
48.5    
48.5    
48.6    
48.7    
48.8    
48.9    
48.9    
49.0    
49.1    
49.2    
49.3    
49.4    
49.4    
49.5    
49.6    
49.7    
49.8    
49.8    
49.9    
50.0    
50.1    
50.2    
50.2    
50.3    
50.4    
50.5    
50.6    
50.6    
50.7    
50.8    
50.9    
51.0    
51.1    
51.1    
51.2    
51.3    
51.4    
51.5    
51.5    
51.6    
51.7    
51.8    
51.9    
51.9    
52.0    
52.1    
52.2    
52.3    
52.3    
52.4    
52.5    
52.6    
52.7    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.2    
53.3    
53.4    
53.5    
53.6    
53.6    
53.7    
53.8    
53.9    
54.0    
54.0    
54.1    
54.2    
54.3    
54.4    
54.4    
54.5    
54.6    
54.7    
54.8    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.3    
55.4    
55.5    
55.6    
55.7    
55.7    
55.8    
55.9    
56.0    
56.1    
56.1    
56.2    
56.3    
56.4    
56.5    
56.5    
56.6    
56.7    
56.8    
56.9    
56.9    
57.0    
57.1    
57.2    
57.3    
57.4    
57.4    
57.5    
57.6    
57.7    
57.8    
57.8    
57.9    
58.0    
58.1    
58.2    
58.2    
58.3    
58.4    
58.5    
58.6    
58.6    
58.7    
58.8    
58.9    
59.0    
59.0    
59.1    
59.2    
59.3    
59.4    
59.5    
59.5    
59.6    
59.7    
59.8    
59.9    
59.9    
60.0    
60.1    
60.2    
60.3    
60.3    
60.4    
60.5    
60.6    
60.7    
60.7    
60.8    
60.9    
61.0    
61.1    
61.1    
61.2    
61.3    
61.4    
61.5    
61.6    
61.6    
61.7    
61.8    
61.9    
62.0    
62.0    
62.1    
62.2    
62.3    
62.4    
62.4    
62.5    
62.6    
62.7    
62.8    
62.8    
62.9    
63.0    
63.1    
63.2    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.7    
63.8    
63.9    
64.0    
64.1    
64.1    
64.2    
64.3    
64.4    
64.5    
64.5    
64.6    
64.7    
64.8    
64.9    
64.9    
65.0    
65.1    
65.2    
65.3    
65.3    
65.4    
65.5    
65.6    
65.7    
65.8    
65.8    
65.9    
66.0    
66.1    
66.2    
66.2    
66.3    
66.4    
66.5    
66.6    
66.6    
66.7    
66.8    
66.9    
67.0    
67.0    
67.1    
67.2    
67.3    
67.4    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
67.9    
68.0    
68.1    
68.2    
68.3    
68.3    
68.4    
68.5    
68.6    
68.7    
68.7    
68.8    
68.9    
69.0    
69.1    
69.1    
69.2    
69.3    
69.4    
69.5    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.0    
70.1    
70.2    
70.3    
70.4    
70.4    
70.5    
70.6    
70.7    
70.8    
70.8    
70.9    
71.0    
71.1    
71.2    
71.2    
71.3    
71.4    
71.5    
71.6    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.1    
72.2    
72.3    
72.4    
72.5    
72.5    
72.6    
72.7    
72.8    
72.9    
72.9    
73.0    
73.1    
73.2    
73.3    
73.3    
73.4    
73.5    
73.6    
73.7    
73.7    
73.8    
73.9    
74.0    
74.1    
74.2    
74.2    
74.3    
74.4    
74.5    
74.6    
74.6    
74.7    
74.8    
74.9    
75.0    
75.0    
75.1    
75.2    
75.3    
75.4    
75.4    
75.5    
75.6    
75.7    
75.8    
75.8    
75.9    
76.0    
76.1    
76.2    
76.3    
76.3    
76.4    
76.5    
76.6    
76.7    
76.7    
76.8    
76.9    
77.0    
77.1    
77.1    
77.2    
77.3    
77.4    
77.5    
77.5    
77.6    
77.7    
77.8    
77.9    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.4    
78.5    
78.6    
78.7    
78.8    
78.8    
78.9    
79.0    
79.1    
79.2    
79.2    
79.3    
79.4    
79.5    
79.6    
79.6    
79.7    
79.8    
79.9    
80.0    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.5    
80.6    
80.7    
80.8    
80.9    
80.9    
81.0    
81.1    
81.2    
81.3    
81.3    
81.4    
81.5    
81.6    
81.7    
81.7    
81.8    
81.9    
82.0    
82.1    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.6    
82.7    
82.8    
82.9    
83.0    
83.0    
83.1    
83.2    
83.3    
83.4    
83.4    
83.5    
83.6    
83.7    
83.8    
83.8    
83.9    
84.0    
84.1    
84.2    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.7    
84.8    
84.9    
85.0    
85.1    
85.1    
85.2    
85.3    
85.4    
85.5    
85.5    
85.6    
85.7    
85.8    
85.9    
85.9    
86.0    
86.1    
86.2    
86.3    
86.3    
86.4    
86.5    
86.6    
86.7    
86.8    
86.8    
86.9    
87.0    
87.1    
87.2    
87.2    
87.3    
87.4    
87.5    
87.6    
87.6    
87.7    
87.8    
87.9    
88.0    
88.0    
88.1    
88.2    
88.3    
88.4    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
88.9    
89.0    
89.1    
89.2    
89.3    
89.3    
89.4    
89.5    
89.6    
89.7    
89.7    
89.8    
89.9    
90.0    
90.1    
90.1    
90.2    
90.3    
90.4    
90.5    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.0    
91.1    
91.2    
91.3    
91.4    
91.4    
91.5    
91.6    
91.7    
91.8    
91.8    
91.9    
92.0    
92.1    
92.2    
92.2    
92.3    
92.4    
92.5    
92.6    
92.6    
92.7    
92.8    
92.9    
93.0    
93.1    
93.1    
93.2    
93.3    
93.4    
93.5    
93.5    
93.6    
93.7    
93.8    
93.9    
93.9    
94.0    
94.1    
94.2    
94.3    
94.3    
94.4    
94.5    
94.6    
94.7    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.2    
95.3    
95.4    
95.5    
95.6    
95.6    
95.7    
95.8    
95.9    
96.0    
96.0    
96.1    
96.2    
96.3    
96.4    
96.4    
96.5    
96.6    
96.7    
96.8    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.3    
97.4    
97.5    
97.6    
97.7    
97.7    
97.8    
97.9    
98.0    
98.1    
98.1    
98.2    
98.3    
98.4    
98.5    
98.5    
98.6    
98.7    
98.8    
98.9    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.4    
99.5    
99.6    
99.7    
99.8    
99.8    
99.9    
-found 58 predictions from path traversal
Error with prediction: snap lend_intergenic: 34882, rend_intergenic: 27625  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57891, rend_intergenic: 40269  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66037, rend_intergenic: 58041  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76602, rend_intergenic: 66775  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83363, rend_intergenic: 79721  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88177, rend_intergenic: 83567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109508, rend_intergenic: 89409  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125708, rend_intergenic: 109575  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129090, rend_intergenic: 127564  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138946, rend_intergenic: 134829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142046, rend_intergenic: 141269  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149864, rend_intergenic: 146780  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154806, rend_intergenic: 153381  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157401, rend_intergenic: 155762  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159778, rend_intergenic: 159395  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163017, rend_intergenic: 159930  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172468, rend_intergenic: 163063  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176685, rend_intergenic: 172482  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182719, rend_intergenic: 176975  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187176, rend_intergenic: 185336  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 228483, rend_intergenic: 211154  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 23 predictions persist after filtering for low support