-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_18/scaffold_18_5606972-5724921

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_18-snap.1177-T1
Valid prediction for snap_scaffold_18-snap.1179-T1
Valid prediction for Augustus_model.g29040.t1
Valid prediction for GlimmerHMM_glimmerT_43388-T1
Valid prediction for GlimmerHMM_glimmerT_43392-T1
Valid prediction for snap_scaffold_18-snap.1189-T1
Valid prediction for Augustus_model.g29046.t1
Valid prediction for GlimmerHMM_glimmerT_43385-T1
Valid prediction for GlimmerHMM_glimmerT_43376-T1
Valid prediction for GlimmerHMM_glimmerT_43386-T1
Valid prediction for GeneMark_model.74864_t
Valid prediction for GlimmerHMM_glimmerT_43381-T1
Valid prediction for GlimmerHMM_glimmerT_43379-T1
Valid prediction for snap_scaffold_18-snap.1175-T1
Valid prediction for snap_scaffold_18-snap.1197-T1
Valid prediction for GlimmerHMM_glimmerT_43377-T1
Valid prediction for GlimmerHMM_glimmerT_43403-T1
Valid prediction for Augustus_model.g29031.t1
Valid prediction for GlimmerHMM_glimmerT_43401-T1
Valid prediction for GeneMark_model.74863_t
Valid prediction for GlimmerHMM_glimmerT_43394-T1
Valid prediction for GlimmerHMM_glimmerT_43390-T1
Valid prediction for GeneMark_model.74860_t
Valid prediction for Augustus_model.g29039.t1
Valid prediction for GeneMark_model.74853_t
Valid prediction for Augustus_model.g29045.t1
Valid prediction for Augustus_model.g29030.t1
Valid prediction for GlimmerHMM_glimmerT_43398-T1
Valid prediction for Augustus_model.g29042.t1
Valid prediction for GeneMark_model.74870_t
Valid prediction for GlimmerHMM_glimmerT_43380-T1
Valid prediction for snap_scaffold_18-snap.1174-T1
Valid prediction for GeneMark_model.74868_t
Valid prediction for snap_scaffold_18-snap.1182-T1
Valid prediction for GeneMark_model.74858_t
Valid prediction for GeneMark_model.74849_t
Valid prediction for snap_scaffold_18-snap.1178-T1
Valid prediction for GeneMark_model.74851_t
Valid prediction for GlimmerHMM_glimmerT_43399-T1
Valid prediction for Augustus_model.g29049.t1
Valid prediction for snap_scaffold_18-snap.1196-T1
Valid prediction for GlimmerHMM_glimmerT_43395-T1
Valid prediction for GlimmerHMM_glimmerT_43391-T1
Valid prediction for GlimmerHMM_glimmerT_43382-T1
Valid prediction for GlimmerHMM_glimmerT_43387-T1
Valid prediction for snap_scaffold_18-snap.1192-T1
Valid prediction for GeneMark_model.74869_t
Valid prediction for snap_scaffold_18-snap.1194-T1
Valid prediction for GeneMark_model.74855_t
Valid prediction for snap_scaffold_18-snap.1191-T1
Valid prediction for GeneMark_model.74854_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_43389-T1
Valid prediction for snap_scaffold_18-snap.1181-T1
Valid prediction for Augustus_model.g29043.t1
Valid prediction for GlimmerHMM_glimmerT_43400-T1
Valid prediction for Augustus_model.g29041.t1
Valid prediction for GeneMark_model.74872_t
Valid prediction for GeneMark_model.74861_t
Valid prediction for Augustus_model.g29044.t1
Valid prediction for GlimmerHMM_glimmerT_43397-T1
Valid prediction for snap_scaffold_18-snap.1187-T1
Valid prediction for Augustus_model.g29035.t1
Valid prediction for snap_scaffold_18-snap.1184-T1
Valid prediction for GlimmerHMM_glimmerT_43393-T1
Valid prediction for snap_scaffold_18-snap.1183-T1
Valid prediction for GeneMark_model.74857_t
Valid prediction for GeneMark_model.74850_t
Valid prediction for Augustus_model.g29048.t1
Valid prediction for GeneMark_model.74871_t
Valid prediction for snap_scaffold_18-snap.1186-T1
Valid prediction for snap_scaffold_18-snap.1195-T1
Valid prediction for snap_scaffold_18-snap.1176-T1
Valid prediction for GeneMark_model.74859_t
Valid prediction for Augustus_model.g29038.t1
Valid prediction for GeneMark_model.74874_t
Valid prediction for Augustus_model.g29032.t1
Valid prediction for snap_scaffold_18-snap.1201-T1
Valid prediction for GlimmerHMM_glimmerT_43383-T1
Valid prediction for GlimmerHMM_glimmerT_43378-T1
Valid prediction for Augustus_model.g29037.t1
Valid prediction for Augustus_model.g29033.t1
Valid prediction for GeneMark_model.74865_t
Valid prediction for GeneMark_model.74867_t
Valid prediction for GeneMark_model.74866_t
Valid prediction for GlimmerHMM_glimmerT_43402-T1
Valid prediction for snap_scaffold_18-snap.1198-T1
Valid prediction for Augustus_model.g29036.t1
Valid prediction for Augustus_model.g29047.t1
Valid prediction for snap_scaffold_18-snap.1180-T1
Valid prediction for GeneMark_model.74852_t
Valid prediction for snap_scaffold_18-snap.1202-T1
Valid prediction for snap_scaffold_18-snap.1199-T1
Valid prediction for snap_scaffold_18-snap.1188-T1
Valid prediction for snap_scaffold_18-snap.1185-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_18-snap.1190-T1
Valid prediction for snap_scaffold_18-snap.1193-T1
Valid prediction for GlimmerHMM_glimmerT_43384-T1
Valid prediction for Augustus_model.g29034.t1
Valid prediction for GlimmerHMM_glimmerT_43396-T1
Valid prediction for snap_scaffold_18-snap.1200-T1
Valid prediction for GeneMark_model.74856_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 92601, rend_intergenic: 91343  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 117950
-exon list size: 359


building trellis

0.3    
0.6    
0.8    
1.1    
1.4    
1.7    
1.9    
2.2    
2.5    
2.8    
3.0    
3.3    
3.6    
3.9    
4.2    
4.4    
4.7    
5.0    
5.3    
5.5    
5.8    
6.1    
6.4    
6.6    
6.9    
7.2    
7.5    
7.8    
8.0    
8.3    
8.6    
8.9    
9.1    
9.4    
9.7    
10.0    
10.2    
10.5    
10.8    
11.1    
11.4    
11.6    
11.9    
12.2    
12.5    
12.7    
13.0    
13.3    
13.6    
13.9    
14.1    
14.4    
14.7    
15.0    
15.2    
15.5    
15.8    
16.1    
16.3    
16.6    
16.9    
17.2    
17.5    
17.7    
18.0    
18.3    
18.6    
18.8    
19.1    
19.4    
19.7    
19.9    
20.2    
20.5    
20.8    
21.1    
21.3    
21.6    
21.9    
22.2    
22.4    
22.7    
23.0    
23.3    
23.5    
23.8    
24.1    
24.4    
24.7    
24.9    
25.2    
25.5    
25.8    
26.0    
26.3    
26.6    
26.9    
27.1    
27.4    
27.7    
28.0    
28.3    
28.5    
28.8    
29.1    
29.4    
29.6    
29.9    
30.2    
30.5    
30.7    
31.0    
31.3    
31.6    
31.9    
32.1    
32.4    
32.7    
33.0    
33.2    
33.5    
33.8    
34.1    
34.3    
34.6    
34.9    
35.2    
35.5    
35.7    
36.0    
36.3    
36.6    
36.8    
37.1    
37.4    
37.7    
38.0    
38.2    
38.5    
38.8    
39.1    
39.3    
39.6    
39.9    
40.2    
40.4    
40.7    
41.0    
41.3    
41.6    
41.8    
42.1    
42.4    
42.7    
42.9    
43.2    
43.5    
43.8    
44.0    
44.3    
44.6    
44.9    
45.2    
45.4    
45.7    
46.0    
46.3    
46.5    
46.8    
47.1    
47.4    
47.6    
47.9    
48.2    
48.5    
48.8    
49.0    
49.3    
49.6    
49.9    
50.1    
50.4    
50.7    
51.0    
51.2    
51.5    
51.8    
52.1    
52.4    
52.6    
52.9    
53.2    
53.5    
53.7    
54.0    
54.3    
54.6    
54.8    
55.1    
55.4    
55.7    
56.0    
56.2    
56.5    
56.8    
57.1    
57.3    
57.6    
57.9    
58.2    
58.4    
58.7    
59.0    
59.3    
59.6    
59.8    
60.1    
60.4    
60.7    
60.9    
61.2    
61.5    
61.8    
62.0    
62.3    
62.6    
62.9    
63.2    
63.4    
63.7    
64.0    
64.3    
64.5    
64.8    
65.1    
65.4    
65.7    
65.9    
66.2    
66.5    
66.8    
67.0    
67.3    
67.6    
67.9    
68.1    
68.4    
68.7    
69.0    
69.3    
69.5    
69.8    
70.1    
70.4    
70.6    
70.9    
71.2    
71.5    
71.7    
72.0    
72.3    
72.6    
72.9    
73.1    
73.4    
73.7    
74.0    
74.2    
74.5    
74.8    
75.1    
75.3    
75.6    
75.9    
76.2    
76.5    
76.7    
77.0    
77.3    
77.6    
77.8    
78.1    
78.4    
78.7    
78.9    
79.2    
79.5    
79.8    
80.1    
80.3    
80.6    
80.9    
81.2    
81.4    
81.7    
82.0    
82.3    
82.5    
82.8    
83.1    
83.4    
83.7    
83.9    
84.2    
84.5    
84.8    
85.0    
85.3    
85.6    
85.9    
86.1    
86.4    
86.7    
87.0    
87.3    
87.5    
87.8    
88.1    
88.4    
88.6    
88.9    
89.2    
89.5    
89.8    
90.0    
90.3    
90.6    
90.9    
91.1    
91.4    
91.7    
92.0    
92.2    
92.5    
92.8    
93.1    
93.4    
93.6    
93.9    
94.2    
94.5    
94.7    
95.0    
95.3    
95.6    
95.8    
96.1    
96.4    
96.7    
97.0    
97.2    
97.5    
97.8    
98.1    
98.3    
98.6    
98.9    
99.2    
99.4    
99.7    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 92601, rend_intergenic: 91343  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support