-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_18/scaffold_18_5297520-5453285

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_18-snap.1135-T1
Valid prediction for GlimmerHMM_glimmerT_43331-T1
Valid prediction for Augustus_model.g28999.t1
Valid prediction for GeneMark_model.74767_t
Valid prediction for GeneMark_model.74771_t
Valid prediction for snap_scaffold_18-snap.1124-T1
Valid prediction for GeneMark_model.74779_t
Valid prediction for snap_scaffold_18-snap.1109-T1
Valid prediction for GlimmerHMM_glimmerT_43339-T1
Valid prediction for snap_scaffold_18-snap.1127-T1
Valid prediction for snap_scaffold_18-snap.1128-T1
Valid prediction for GlimmerHMM_glimmerT_43323-T1
Valid prediction for Augustus_model.g28982.t1
Valid prediction for GeneMark_model.74775_t
Valid prediction for Augustus_model.g28993.t1
Valid prediction for GeneMark_model.74777_t
Valid prediction for GlimmerHMM_glimmerT_43345-T1
Valid prediction for Augustus_model.g28994.t1
Valid prediction for snap_scaffold_18-snap.1125-T1
Valid prediction for snap_scaffold_18-snap.1114-T1
Valid prediction for snap_scaffold_18-snap.1096-T1
Valid prediction for GeneMark_model.74790_t
Valid prediction for HiQ_model.g29001.t1
Valid prediction for snap_scaffold_18-snap.1134-T1
Valid prediction for GeneMark_model.74772_t
Valid prediction for GeneMark_model.74787_t
Valid prediction for GlimmerHMM_glimmerT_43346-T1
Valid prediction for GlimmerHMM_glimmerT_43341-T1
Valid prediction for GlimmerHMM_glimmerT_43347-T1
Valid prediction for snap_scaffold_18-snap.1123-T1
Valid prediction for Augustus_model.g28977.t1
Valid prediction for snap_scaffold_18-snap.1117-T1
Valid prediction for GeneMark_model.74798_t
Valid prediction for GeneMark_model.74793_t
Valid prediction for snap_scaffold_18-snap.1129-T1
Valid prediction for snap_scaffold_18-snap.1103-T1
Valid prediction for GeneMark_model.74781_t
Valid prediction for GlimmerHMM_glimmerT_43330-T1
Valid prediction for GlimmerHMM_glimmerT_43329-T1
Valid prediction for snap_scaffold_18-snap.1100-T1
Valid prediction for snap_scaffold_18-snap.1119-T1
Valid prediction for GlimmerHMM_glimmerT_43327-T1
Valid prediction for Augustus_model.g28978.t1
Valid prediction for snap_scaffold_18-snap.1102-T1
Valid prediction for Augustus_model.g28986.t1
Valid prediction for GlimmerHMM_glimmerT_43340-T1
Valid prediction for snap_scaffold_18-snap.1122-T1
Valid prediction for GlimmerHMM_glimmerT_43319-T1
Valid prediction for GeneMark_model.74789_t
Valid prediction for snap_scaffold_18-snap.1107-T1
Valid prediction for Augustus_model.g28987.t1
Valid prediction for Augustus_model.g28980.t1
Valid prediction for Augustus_model.g28989.t1
Valid prediction for GeneMark_model.74785_t
Valid prediction for GlimmerHMM_glimmerT_43328-T1
Valid prediction for GlimmerHMM_glimmerT_43322-T1
Valid prediction for GeneMark_model.74801_t
Valid prediction for snap_scaffold_18-snap.1130-T1
Valid prediction for GlimmerHMM_glimmerT_43336-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g28979.t1
Valid prediction for snap_scaffold_18-snap.1111-T1
Valid prediction for Augustus_model.g28988.t1
Valid prediction for snap_scaffold_18-snap.1113-T1
Valid prediction for GlimmerHMM_glimmerT_43326-T1
Valid prediction for GlimmerHMM_glimmerT_43324-T1
Valid prediction for GeneMark_model.74795_t
Valid prediction for GlimmerHMM_glimmerT_43344-T1
Valid prediction for Augustus_model.g29000.t1
Valid prediction for snap_scaffold_18-snap.1104-T1
Valid prediction for GeneMark_model.74783_t
Valid prediction for snap_scaffold_18-snap.1132-T1
Valid prediction for GeneMark_model.74802_t
Valid prediction for GeneMark_model.74794_t
Valid prediction for snap_scaffold_18-snap.1105-T1
Valid prediction for GlimmerHMM_glimmerT_43325-T1
Valid prediction for GeneMark_model.74776_t
Valid prediction for GeneMark_model.74769_t
Valid prediction for GeneMark_model.74780_t
Valid prediction for snap_scaffold_18-snap.1116-T1
Valid prediction for snap_scaffold_18-snap.1097-T1
Valid prediction for snap_scaffold_18-snap.1110-T1
Valid prediction for GlimmerHMM_glimmerT_43321-T1
Valid prediction for GlimmerHMM_glimmerT_43335-T1
Valid prediction for snap_scaffold_18-snap.1126-T1
Valid prediction for Augustus_model.g28997.t1
Valid prediction for Augustus_model.g28984.t1
Valid prediction for GlimmerHMM_glimmerT_43342-T1
Valid prediction for snap_scaffold_18-snap.1131-T1
Valid prediction for GeneMark_model.74778_t
Valid prediction for GlimmerHMM_glimmerT_43332-T1
Valid prediction for snap_scaffold_18-snap.1118-T1
Valid prediction for Augustus_model.g28981.t1
Valid prediction for Augustus_model.g28992.t1
Valid prediction for GeneMark_model.74799_t
Valid prediction for GlimmerHMM_glimmerT_43337-T1
Valid prediction for Augustus_model.g28995.t1
Valid prediction for Augustus_model.g28983.t1
Valid prediction for GlimmerHMM_glimmerT_43343-T1
Valid prediction for GeneMark_model.74800_t
Valid prediction for snap_scaffold_18-snap.1138-T1
Valid prediction for GlimmerHMM_glimmerT_43320-T1
Valid prediction for GeneMark_model.74797_t
Valid prediction for Augustus_model.g28985.t1
Valid prediction for snap_scaffold_18-snap.1106-T1
Valid prediction for Augustus_model.g28991.t1
Valid prediction for GeneMark_model.74796_t
Valid prediction for GlimmerHMM_glimmerT_43333-T1
Valid prediction for GeneMark_model.74791_t
Valid prediction for GeneMark_model.74782_t
Valid prediction for snap_scaffold_18-snap.1101-T1
Valid prediction for snap_scaffold_18-snap.1120-T1
Valid prediction for snap_scaffold_18-snap.1133-T1
Valid prediction for Augustus_model.g28996.t1
Valid prediction for GeneMark_model.74773_t
Valid prediction for GeneMark_model.74788_t
Valid prediction for Augustus_model.g28990.t1
Valid prediction for snap_scaffold_18-snap.1099-T1
Valid prediction for snap_scaffold_18-snap.1136-T1
Valid prediction for GeneMark_model.74770_t
Valid prediction for GeneMark_model.74792_t
Valid prediction for snap_scaffold_18-snap.1121-T1
Valid prediction for Augustus_model.g28998.t1
Valid prediction for GeneMark_model.74786_t
Valid prediction for GlimmerHMM_glimmerT_43338-T1
Valid prediction for GeneMark_model.74804_t
Couldn't classify 93906, 94700
Sorry, prediction pasa_asmbl_19869.p1 fails validation.
(TTT)	 CG	93906-94700	AG	AAA
Valid prediction for GlimmerHMM_glimmerT_43334-T1
Valid prediction for snap_scaffold_18-snap.1112-T1
Valid prediction for snap_scaffold_18-snap.1098-T1
Valid prediction for snap_scaffold_18-snap.1115-T1
Valid prediction for snap_scaffold_18-snap.1108-T1
Valid prediction for GeneMark_model.74768_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8307, rend_intergenic: 4055  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33325, rend_intergenic: 27670  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36100, rend_intergenic: 33397  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55558, rend_intergenic: 51698  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88171, rend_intergenic: 84061  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112327, rend_intergenic: 106902  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138125, rend_intergenic: 134804  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143490, rend_intergenic: 139304  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 155766
-exon list size: 592


building trellis

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99.3    
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99.7    
99.8    
-found 36 predictions from path traversal
Error with prediction: snap lend_intergenic: 8307, rend_intergenic: 4055  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33325, rend_intergenic: 27670  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36100, rend_intergenic: 33397  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55558, rend_intergenic: 51698  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88171, rend_intergenic: 84061  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112327, rend_intergenic: 106902  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138125, rend_intergenic: 134804  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143490, rend_intergenic: 139304  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support