-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_18/scaffold_18_5186918-5299832

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.74760_t
Valid prediction for snap_scaffold_18-snap.1072-T1
Valid prediction for snap_scaffold_18-snap.1088-T1
Valid prediction for snap_scaffold_18-snap.1095-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_43304-T1
Valid prediction for snap_scaffold_18-snap.1092-T1
Valid prediction for snap_scaffold_18-snap.1071-T1
Valid prediction for GeneMark_model.74758_t
Valid prediction for snap_scaffold_18-snap.1076-T1
Valid prediction for snap_scaffold_18-snap.1084-T1
Valid prediction for GeneMark_model.74751_t
Valid prediction for GeneMark_model.74749_t
Valid prediction for snap_scaffold_18-snap.1082-T1
Valid prediction for snap_scaffold_18-snap.1066-T1
Valid prediction for GlimmerHMM_glimmerT_43314-T1
Valid prediction for GeneMark_model.74741_t
Valid prediction for snap_scaffold_18-snap.1083-T1
Valid prediction for GeneMark_model.74764_t
Valid prediction for GeneMark_model.74756_t
Valid prediction for Augustus_model.g28971.t1
Valid prediction for GeneMark_model.74745_t
Valid prediction for GlimmerHMM_glimmerT_43312-T1
Valid prediction for snap_scaffold_18-snap.1074-T1
Valid prediction for snap_scaffold_18-snap.1065-T1
Valid prediction for snap_scaffold_18-snap.1068-T1
Valid prediction for snap_scaffold_18-snap.1062-T1
Valid prediction for GlimmerHMM_glimmerT_43307-T1
Valid prediction for GlimmerHMM_glimmerT_43303-T1
Valid prediction for Augustus_model.g28965.t1
Valid prediction for GeneMark_model.74734_t
Valid prediction for GlimmerHMM_glimmerT_43301-T1
Valid prediction for GeneMark_model.74736_t
Valid prediction for GlimmerHMM_glimmerT_43313-T1
Couldn't classify 95052, 95089
Couldn't classify 98710, 98752
Sorry, prediction pasa_asmbl_20611.p2 fails validation.
(ACC)	 AC	95052-95089	GT	AGG
(ACT)	 AG	97945-98223	GT	AGG
(GAA)	 AG	98710-98752	CT	CCC
-recovered pasa_asmbl_20611.p2, internal, 97945, 98223
Valid prediction for Augustus_model.g28969.t1
Valid prediction for Augustus_model.g28974.t1
Valid prediction for GeneMark_model.74738_t
Valid prediction for GeneMark_model.74754_t
Valid prediction for GeneMark_model.74744_t
Valid prediction for snap_scaffold_18-snap.1070-T1
Valid prediction for snap_scaffold_18-snap.1091-T1
Valid prediction for GlimmerHMM_glimmerT_43302-T1
Valid prediction for GlimmerHMM_glimmerT_43315-T1
Valid prediction for snap_scaffold_18-snap.1093-T1
Valid prediction for GeneMark_model.74739_t
Valid prediction for snap_scaffold_18-snap.1069-T1
Valid prediction for GeneMark_model.74762_t
Couldn't classify 99292, 99435
Sorry, prediction pasa_asmbl_20612.p2 fails validation.
(ACG)	 GG	99292-99435	GT	AGG
(GAG)	 AG	99806-100003	CC	AGC
-recovered pasa_asmbl_20612.p2, terminal, 99806, 100003
Valid prediction for Augustus_model.g28966.t1
Valid prediction for Augustus_model.g28970.t1
Valid prediction for snap_scaffold_18-snap.1079-T1
Valid prediction for GlimmerHMM_glimmerT_43310-T1
Valid prediction for GeneMark_model.74743_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.74753_t
Valid prediction for GeneMark_model.74757_t
Valid prediction for snap_scaffold_18-snap.1090-T1
Valid prediction for snap_scaffold_18-snap.1078-T1
Valid prediction for snap_scaffold_18-snap.1075-T1
Valid prediction for GeneMark_model.74752_t
Valid prediction for Augustus_model.g28968.t1
Valid prediction for snap_scaffold_18-snap.1063-T1
Valid prediction for GeneMark_model.74735_t
Valid prediction for Augustus_model.g28972.t1
Valid prediction for Augustus_model.g28964.t1
Valid prediction for Augustus_model.g28976.t1
Valid prediction for GeneMark_model.74742_t
Valid prediction for Augustus_model.g28973.t1
Valid prediction for snap_scaffold_18-snap.1087-T1
Valid prediction for GeneMark_model.74755_t
Valid prediction for snap_scaffold_18-snap.1067-T1
Valid prediction for GlimmerHMM_glimmerT_43309-T1
Valid prediction for Augustus_model.g28967.t1
Valid prediction for snap_scaffold_18-snap.1086-T1
Valid prediction for GeneMark_model.74746_t
Valid prediction for GeneMark_model.74740_t
Valid prediction for GlimmerHMM_glimmerT_43318-T1
Valid prediction for snap_scaffold_18-snap.1077-T1
Valid prediction for GeneMark_model.74733_t
Valid prediction for snap_scaffold_18-snap.1080-T1
Valid prediction for GeneMark_model.74747_t
Valid prediction for GeneMark_model.74761_t
Valid prediction for GeneMark_model.74759_t
Valid prediction for snap_scaffold_18-snap.1073-T1
Valid prediction for GeneMark_model.74750_t
Valid prediction for GeneMark_model.74748_t
Valid prediction for snap_scaffold_18-snap.1085-T1
Valid prediction for snap_scaffold_18-snap.1061-T1
Valid prediction for snap_scaffold_18-snap.1094-T1
Valid prediction for GlimmerHMM_glimmerT_43300-T1
Valid prediction for snap_scaffold_18-snap.1064-T1
Valid prediction for GlimmerHMM_glimmerT_43316-T1
Valid prediction for GeneMark_model.74763_t
Valid prediction for GlimmerHMM_glimmerT_43311-T1
Valid prediction for GeneMark_model.74737_t
Valid prediction for GlimmerHMM_glimmerT_43317-T1
Valid prediction for GlimmerHMM_glimmerT_43305-T1
Valid prediction for snap_scaffold_18-snap.1089-T1
Valid prediction for Augustus_model.g28975.t1
Valid prediction for snap_scaffold_18-snap.1081-T1
Valid prediction for GlimmerHMM_glimmerT_43299-T1
Valid prediction for GlimmerHMM_glimmerT_43306-T1
Valid prediction for GlimmerHMM_glimmerT_43308-T1
Valid prediction for GeneMark_model.74766_t
Valid prediction for GeneMark_model.74732_t
Valid prediction for GeneMark_model.74765_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11954, rend_intergenic: 10083  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73626, rend_intergenic: 71542  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82834, rend_intergenic: 76930  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85926, rend_intergenic: 84258  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89833, rend_intergenic: 87696  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93876, rend_intergenic: 90720  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105537, rend_intergenic: 103690  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 112915
-exon list size: 408


building trellis

0.2    
0.5    
0.7    
1.0    
1.2    
1.5    
1.7    
2.0    
2.2    
2.4    
2.7    
2.9    
3.2    
3.4    
3.7    
3.9    
4.1    
4.4    
4.6    
4.9    
5.1    
5.4    
5.6    
5.9    
6.1    
6.3    
6.6    
6.8    
7.1    
7.3    
7.6    
7.8    
8.0    
8.3    
8.5    
8.8    
9.0    
9.3    
9.5    
9.8    
10.0    
10.2    
10.5    
10.7    
11.0    
11.2    
11.5    
11.7    
12.0    
12.2    
12.4    
12.7    
12.9    
13.2    
13.4    
13.7    
13.9    
14.1    
14.4    
14.6    
14.9    
15.1    
15.4    
15.6    
15.9    
16.1    
16.3    
16.6    
16.8    
17.1    
17.3    
17.6    
17.8    
18.0    
18.3    
18.5    
18.8    
19.0    
19.3    
19.5    
19.8    
20.0    
20.2    
20.5    
20.7    
21.0    
21.2    
21.5    
21.7    
22.0    
22.2    
22.4    
22.7    
22.9    
23.2    
23.4    
23.7    
23.9    
24.1    
24.4    
24.6    
24.9    
25.1    
25.4    
25.6    
25.9    
26.1    
26.3    
26.6    
26.8    
27.1    
27.3    
27.6    
27.8    
28.0    
28.3    
28.5    
28.8    
29.0    
29.3    
29.5    
29.8    
30.0    
30.2    
30.5    
30.7    
31.0    
31.2    
31.5    
31.7    
32.0    
32.2    
32.4    
32.7    
32.9    
33.2    
33.4    
33.7    
33.9    
34.1    
34.4    
34.6    
34.9    
35.1    
35.4    
35.6    
35.9    
36.1    
36.3    
36.6    
36.8    
37.1    
37.3    
37.6    
37.8    
38.0    
38.3    
38.5    
38.8    
39.0    
39.3    
39.5    
39.8    
40.0    
40.2    
40.5    
40.7    
41.0    
41.2    
41.5    
41.7    
42.0    
42.2    
42.4    
42.7    
42.9    
43.2    
43.4    
43.7    
43.9    
44.1    
44.4    
44.6    
44.9    
45.1    
45.4    
45.6    
45.9    
46.1    
46.3    
46.6    
46.8    
47.1    
47.3    
47.6    
47.8    
48.0    
48.3    
48.5    
48.8    
49.0    
49.3    
49.5    
49.8    
50.0    
50.2    
50.5    
50.7    
51.0    
51.2    
51.5    
51.7    
52.0    
52.2    
52.4    
52.7    
52.9    
53.2    
53.4    
53.7    
53.9    
54.1    
54.4    
54.6    
54.9    
55.1    
55.4    
55.6    
55.9    
56.1    
56.3    
56.6    
56.8    
57.1    
57.3    
57.6    
57.8    
58.0    
58.3    
58.5    
58.8    
59.0    
59.3    
59.5    
59.8    
60.0    
60.2    
60.5    
60.7    
61.0    
61.2    
61.5    
61.7    
62.0    
62.2    
62.4    
62.7    
62.9    
63.2    
63.4    
63.7    
63.9    
64.1    
64.4    
64.6    
64.9    
65.1    
65.4    
65.6    
65.9    
66.1    
66.3    
66.6    
66.8    
67.1    
67.3    
67.6    
67.8    
68.0    
68.3    
68.5    
68.8    
69.0    
69.3    
69.5    
69.8    
70.0    
70.2    
70.5    
70.7    
71.0    
71.2    
71.5    
71.7    
72.0    
72.2    
72.4    
72.7    
72.9    
73.2    
73.4    
73.7    
73.9    
74.1    
74.4    
74.6    
74.9    
75.1    
75.4    
75.6    
75.9    
76.1    
76.3    
76.6    
76.8    
77.1    
77.3    
77.6    
77.8    
78.0    
78.3    
78.5    
78.8    
79.0    
79.3    
79.5    
79.8    
80.0    
80.2    
80.5    
80.7    
81.0    
81.2    
81.5    
81.7    
82.0    
82.2    
82.4    
82.7    
82.9    
83.2    
83.4    
83.7    
83.9    
84.1    
84.4    
84.6    
84.9    
85.1    
85.4    
85.6    
85.9    
86.1    
86.3    
86.6    
86.8    
87.1    
87.3    
87.6    
87.8    
88.0    
88.3    
88.5    
88.8    
89.0    
89.3    
89.5    
89.8    
90.0    
90.2    
90.5    
90.7    
91.0    
91.2    
91.5    
91.7    
92.0    
92.2    
92.4    
92.7    
92.9    
93.2    
93.4    
93.7    
93.9    
94.1    
94.4    
94.6    
94.9    
95.1    
95.4    
95.6    
95.9    
96.1    
96.3    
96.6    
96.8    
97.1    
97.3    
97.6    
97.8    
98.0    
98.3    
98.5    
98.8    
99.0    
99.3    
99.5    
99.8    
-found 34 predictions from path traversal
Error with prediction: snap lend_intergenic: 11954, rend_intergenic: 10083  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73626, rend_intergenic: 71542  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82834, rend_intergenic: 76930  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85926, rend_intergenic: 84258  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89833, rend_intergenic: 87696  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93876, rend_intergenic: 90720  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105537, rend_intergenic: 103690  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support