-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_18/scaffold_18_3352563-3550522

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.74275_t
Valid prediction for GeneMark_model.74316_t
Valid prediction for GlimmerHMM_glimmerT_43024-T1
Valid prediction for snap_scaffold_18-snap.696-T1
Valid prediction for snap_scaffold_18-snap.693-T1
Valid prediction for snap_scaffold_18-snap.674-T1
Valid prediction for snap_scaffold_18-snap.708-T1
Valid prediction for GlimmerHMM_glimmerT_43013-T1
Valid prediction for Augustus_model.g28767.t1
Valid prediction for snap_scaffold_18-snap.699-T1
Valid prediction for GlimmerHMM_glimmerT_43021-T1
Valid prediction for GlimmerHMM_glimmerT_43022-T1
Valid prediction for GeneMark_model.74284_t
Valid prediction for GeneMark_model.74291_t
Valid prediction for GlimmerHMM_glimmerT_42998-T1
Valid prediction for GlimmerHMM_glimmerT_42996-T1
Valid prediction for snap_scaffold_18-snap.670-T1
Valid prediction for snap_scaffold_18-snap.678-T1
Valid prediction for GeneMark_model.74278_t
Valid prediction for GeneMark_model.74272_t
Valid prediction for GlimmerHMM_glimmerT_43004-T1
Valid prediction for snap_scaffold_18-snap.709-T1
Valid prediction for GlimmerHMM_glimmerT_43023-T1
Valid prediction for snap_scaffold_18-snap.692-T1
Valid prediction for HiQ_model.g28779.t1
Valid prediction for GeneMark_model.74292_t
Valid prediction for GeneMark_model.74279_t
Valid prediction for snap_scaffold_18-snap.684-T1
Valid prediction for GlimmerHMM_glimmerT_43011-T1
Valid prediction for Augustus_model.g28781.t1
Valid prediction for snap_scaffold_18-snap.682-T1
Valid prediction for snap_scaffold_18-snap.703-T1
Valid prediction for Augustus_model.g28770.t1
Valid prediction for snap_scaffold_18-snap.688-T1
Valid prediction for snap_scaffold_18-snap.714-T1
Valid prediction for GlimmerHMM_glimmerT_43001-T1
Valid prediction for Augustus_model.g28778.t1
Valid prediction for GeneMark_model.74286_t
Valid prediction for GeneMark_model.74312_t
Valid prediction for GeneMark_model.74269_t
Valid prediction for GeneMark_model.74296_t
Valid prediction for snap_scaffold_18-snap.705-T1
Valid prediction for GeneMark_model.74280_t
Valid prediction for GlimmerHMM_glimmerT_43010-T1
Valid prediction for GeneMark_model.74276_t
Valid prediction for snap_scaffold_18-snap.672-T1
Valid prediction for GeneMark_model.74300_t
Valid prediction for GeneMark_model.74288_t
Valid prediction for GlimmerHMM_glimmerT_43017-T1
Valid prediction for snap_scaffold_18-snap.700-T1
Valid prediction for snap_scaffold_18-snap.676-T1
Valid prediction for GeneMark_model.74325_t
Valid prediction for GeneMark_model.74299_t
Valid prediction for GeneMark_model.74302_t
Valid prediction for GeneMark_model.74315_t
Valid prediction for GeneMark_model.74323_t
Valid prediction for GeneMark_model.74317_t
Valid prediction for GeneMark_model.74319_t
Valid prediction for GeneMark_model.74321_t
Valid prediction for snap_scaffold_18-snap.690-T1
Valid prediction for GlimmerHMM_glimmerT_43002-T1
Valid prediction for GeneMark_model.74287_t
Valid prediction for pasa_asmbl_20480.p1
Valid prediction for snap_scaffold_18-snap.685-T1
Valid prediction for GeneMark_model.74303_t
Valid prediction for snap_scaffold_18-snap.707-T1
Valid prediction for snap_scaffold_18-snap.715-T1
Valid prediction for GeneMark_model.74294_t
Valid prediction for Augustus_model.g28769.t1
Valid prediction for CodingQuarry_transcript_23663-T1
Valid prediction for Augustus_model.g28777.t1
Valid prediction for snap_scaffold_18-snap.686-T1
Valid prediction for GeneMark_model.74271_t
Valid prediction for GeneMark_model.74320_t
Valid prediction for GeneMark_model.74308_t
Valid prediction for snap_scaffold_18-snap.712-T1
Valid prediction for Augustus_model.g28771.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_43025-T1
Valid prediction for GeneMark_model.74324_t
Valid prediction for Augustus_model.g28765.t1
Valid prediction for snap_scaffold_18-snap.694-T1
Valid prediction for GeneMark_model.74273_t
Valid prediction for GlimmerHMM_glimmerT_43003-T1
Valid prediction for GeneMark_model.74268_t
Valid prediction for Augustus_model.g28772.t1
Valid prediction for GlimmerHMM_glimmerT_43020-T1
Valid prediction for Augustus_model.g28773.t1
Valid prediction for Augustus_model.g28776.t1
Valid prediction for GeneMark_model.74290_t
Valid prediction for snap_scaffold_18-snap.673-T1
Valid prediction for GlimmerHMM_glimmerT_43018-T1
Valid prediction for snap_scaffold_18-snap.671-T1
Valid prediction for GeneMark_model.74283_t
Valid prediction for GeneMark_model.74306_t
Valid prediction for snap_scaffold_18-snap.683-T1
Valid prediction for GeneMark_model.74277_t
Valid prediction for GeneMark_model.74309_t
Valid prediction for GlimmerHMM_glimmerT_43014-T1
Valid prediction for GeneMark_model.74305_t
Valid prediction for GlimmerHMM_glimmerT_43012-T1
Valid prediction for snap_scaffold_18-snap.702-T1
Valid prediction for GeneMark_model.74295_t
Valid prediction for snap_scaffold_18-snap.710-T1
Valid prediction for snap_scaffold_18-snap.675-T1
Valid prediction for GeneMark_model.74310_t
Valid prediction for snap_scaffold_18-snap.679-T1
Valid prediction for GlimmerHMM_glimmerT_43009-T1
Valid prediction for snap_scaffold_18-snap.695-T1
Valid prediction for GeneMark_model.74281_t
Valid prediction for GlimmerHMM_glimmerT_43007-T1
Valid prediction for GeneMark_model.74270_t
Valid prediction for GlimmerHMM_glimmerT_43015-T1
Valid prediction for GeneMark_model.74301_t
Valid prediction for snap_scaffold_18-snap.698-T1
Valid prediction for snap_scaffold_18-snap.711-T1
Valid prediction for GeneMark_model.74293_t
Valid prediction for GeneMark_model.74311_t
Valid prediction for snap_scaffold_18-snap.704-T1
Valid prediction for GeneMark_model.74297_t
Valid prediction for GeneMark_model.74313_t
Valid prediction for Augustus_model.g28775.t1
Valid prediction for GlimmerHMM_glimmerT_43019-T1
Valid prediction for GlimmerHMM_glimmerT_43016-T1
Valid prediction for snap_scaffold_18-snap.691-T1
Valid prediction for GeneMark_model.74314_t
Valid prediction for GlimmerHMM_glimmerT_43006-T1
Valid prediction for snap_scaffold_18-snap.697-T1
Valid prediction for snap_scaffold_18-snap.706-T1
Valid prediction for GlimmerHMM_glimmerT_42997-T1
Valid prediction for GeneMark_model.74289_t
Valid prediction for snap_scaffold_18-snap.701-T1
Valid prediction for snap_scaffold_18-snap.689-T1
Valid prediction for snap_scaffold_18-snap.680-T1
Valid prediction for GlimmerHMM_glimmerT_43005-T1
Valid prediction for Augustus_model.g28768.t1
Valid prediction for Augustus_model.g28774.t1
Valid prediction for Augustus_model.g28780.t1
Valid prediction for GeneMark_model.74274_t
Valid prediction for snap_scaffold_18-snap.713-T1
Sorry, intron length (5) is less than minimum required (10)
Valid prediction for GeneMark_model.74307_t
Valid prediction for snap_scaffold_18-snap.687-T1
Valid prediction for GeneMark_model.74318_t
Valid prediction for GlimmerHMM_glimmerT_42999-T1
Valid prediction for GlimmerHMM_glimmerT_43000-T1
Valid prediction for snap_scaffold_18-snap.677-T1
Valid prediction for Augustus_model.g28766.t1
Valid prediction for GlimmerHMM_glimmerT_43008-T1
Valid prediction for GeneMark_model.74304_t
Valid prediction for snap_scaffold_18-snap.681-T1
Valid prediction for GeneMark_model.74298_t
Valid prediction for GeneMark_model.74285_t
Valid prediction for GeneMark_model.74322_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4944, rend_intergenic: 4897  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14216, rend_intergenic: 7803  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25691, rend_intergenic: 21799  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37700, rend_intergenic: 33507  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41535, rend_intergenic: 41359  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50043, rend_intergenic: 41592  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57248, rend_intergenic: 54619  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59066, rend_intergenic: 57429  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64785, rend_intergenic: 60095  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81836, rend_intergenic: 79756  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92452, rend_intergenic: 91352  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94465, rend_intergenic: 92777  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98045, rend_intergenic: 94745  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141231, rend_intergenic: 136574  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149730, rend_intergenic: 147464  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153679, rend_intergenic: 150361  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166432, rend_intergenic: 161215  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194311, rend_intergenic: 185513  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 197960
-exon list size: 714


building trellis

0.1    
0.3    
0.4    
0.6    
0.7    
0.8    
1.0    
1.1    
1.3    
1.4    
1.5    
1.7    
1.8    
2.0    
2.1    
2.2    
2.4    
2.5    
2.7    
2.8    
2.9    
3.1    
3.2    
3.4    
3.5    
3.6    
3.8    
3.9    
4.1    
4.2    
4.3    
4.5    
4.6    
4.7    
4.9    
5.0    
5.2    
5.3    
5.4    
5.6    
5.7    
5.9    
6.0    
6.1    
6.3    
6.4    
6.6    
6.7    
6.8    
7.0    
7.1    
7.3    
7.4    
7.5    
7.7    
7.8    
8.0    
8.1    
8.2    
8.4    
8.5    
8.7    
8.8    
8.9    
9.1    
9.2    
9.4    
9.5    
9.6    
9.8    
9.9    
10.1    
10.2    
10.3    
10.5    
10.6    
10.8    
10.9    
11.0    
11.2    
11.3    
11.5    
11.6    
11.7    
11.9    
12.0    
12.2    
12.3    
12.4    
12.6    
12.7    
12.8    
13.0    
13.1    
13.3    
13.4    
13.5    
13.7    
13.8    
14.0    
14.1    
14.2    
14.4    
14.5    
14.7    
14.8    
14.9    
15.1    
15.2    
15.4    
15.5    
15.6    
15.8    
15.9    
16.1    
16.2    
16.3    
16.5    
16.6    
16.8    
16.9    
17.0    
17.2    
17.3    
17.5    
17.6    
17.7    
17.9    
18.0    
18.2    
18.3    
18.4    
18.6    
18.7    
18.9    
19.0    
19.1    
19.3    
19.4    
19.6    
19.7    
19.8    
20.0    
20.1    
20.3    
20.4    
20.5    
20.7    
20.8    
20.9    
21.1    
21.2    
21.4    
21.5    
21.6    
21.8    
21.9    
22.1    
22.2    
22.3    
22.5    
22.6    
22.8    
22.9    
23.0    
23.2    
23.3    
23.5    
23.6    
23.7    
23.9    
24.0    
24.2    
24.3    
24.4    
24.6    
24.7    
24.9    
25.0    
25.1    
25.3    
25.4    
25.6    
25.7    
25.8    
26.0    
26.1    
26.3    
26.4    
26.5    
26.7    
26.8    
27.0    
27.1    
27.2    
27.4    
27.5    
27.7    
27.8    
27.9    
28.1    
28.2    
28.4    
28.5    
28.6    
28.8    
28.9    
29.1    
29.2    
29.3    
29.5    
29.6    
29.7    
29.9    
30.0    
30.2    
30.3    
30.4    
30.6    
30.7    
30.9    
31.0    
31.1    
31.3    
31.4    
31.6    
31.7    
31.8    
32.0    
32.1    
32.3    
32.4    
32.5    
32.7    
32.8    
33.0    
33.1    
33.2    
33.4    
33.5    
33.7    
33.8    
33.9    
34.1    
34.2    
34.4    
34.5    
34.6    
34.8    
34.9    
35.1    
35.2    
35.3    
35.5    
35.6    
35.8    
35.9    
36.0    
36.2    
36.3    
36.5    
36.6    
36.7    
36.9    
37.0    
37.2    
37.3    
37.4    
37.6    
37.7    
37.8    
38.0    
38.1    
38.3    
38.4    
38.5    
38.7    
38.8    
39.0    
39.1    
39.2    
39.4    
39.5    
39.7    
39.8    
39.9    
40.1    
40.2    
40.4    
40.5    
40.6    
40.8    
40.9    
41.1    
41.2    
41.3    
41.5    
41.6    
41.8    
41.9    
42.0    
42.2    
42.3    
42.5    
42.6    
42.7    
42.9    
43.0    
43.2    
43.3    
43.4    
43.6    
43.7    
43.9    
44.0    
44.1    
44.3    
44.4    
44.6    
44.7    
44.8    
45.0    
45.1    
45.3    
45.4    
45.5    
45.7    
45.8    
45.9    
46.1    
46.2    
46.4    
46.5    
46.6    
46.8    
46.9    
47.1    
47.2    
47.3    
47.5    
47.6    
47.8    
47.9    
48.0    
48.2    
48.3    
48.5    
48.6    
48.7    
48.9    
49.0    
49.2    
49.3    
49.4    
49.6    
49.7    
49.9    
50.0    
50.1    
50.3    
50.4    
50.6    
50.7    
50.8    
51.0    
51.1    
51.3    
51.4    
51.5    
51.7    
51.8    
52.0    
52.1    
52.2    
52.4    
52.5    
52.7    
52.8    
52.9    
53.1    
53.2    
53.4    
53.5    
53.6    
53.8    
53.9    
54.1    
54.2    
54.3    
54.5    
54.6    
54.7    
54.9    
55.0    
55.2    
55.3    
55.4    
55.6    
55.7    
55.9    
56.0    
56.1    
56.3    
56.4    
56.6    
56.7    
56.8    
57.0    
57.1    
57.3    
57.4    
57.5    
57.7    
57.8    
58.0    
58.1    
58.2    
58.4    
58.5    
58.7    
58.8    
58.9    
59.1    
59.2    
59.4    
59.5    
59.6    
59.8    
59.9    
60.1    
60.2    
60.3    
60.5    
60.6    
60.8    
60.9    
61.0    
61.2    
61.3    
61.5    
61.6    
61.7    
61.9    
62.0    
62.2    
62.3    
62.4    
62.6    
62.7    
62.8    
63.0    
63.1    
63.3    
63.4    
63.5    
63.7    
63.8    
64.0    
64.1    
64.2    
64.4    
64.5    
64.7    
64.8    
64.9    
65.1    
65.2    
65.4    
65.5    
65.6    
65.8    
65.9    
66.1    
66.2    
66.3    
66.5    
66.6    
66.8    
66.9    
67.0    
67.2    
67.3    
67.5    
67.6    
67.7    
67.9    
68.0    
68.2    
68.3    
68.4    
68.6    
68.7    
68.9    
69.0    
69.1    
69.3    
69.4    
69.6    
69.7    
69.8    
70.0    
70.1    
70.3    
70.4    
70.5    
70.7    
70.8    
70.9    
71.1    
71.2    
71.4    
71.5    
71.6    
71.8    
71.9    
72.1    
72.2    
72.3    
72.5    
72.6    
72.8    
72.9    
73.0    
73.2    
73.3    
73.5    
73.6    
73.7    
73.9    
74.0    
74.2    
74.3    
74.4    
74.6    
74.7    
74.9    
75.0    
75.1    
75.3    
75.4    
75.6    
75.7    
75.8    
76.0    
76.1    
76.3    
76.4    
76.5    
76.7    
76.8    
77.0    
77.1    
77.2    
77.4    
77.5    
77.7    
77.8    
77.9    
78.1    
78.2    
78.4    
78.5    
78.6    
78.8    
78.9    
79.1    
79.2    
79.3    
79.5    
79.6    
79.7    
79.9    
80.0    
80.2    
80.3    
80.4    
80.6    
80.7    
80.9    
81.0    
81.1    
81.3    
81.4    
81.6    
81.7    
81.8    
82.0    
82.1    
82.3    
82.4    
82.5    
82.7    
82.8    
83.0    
83.1    
83.2    
83.4    
83.5    
83.7    
83.8    
83.9    
84.1    
84.2    
84.4    
84.5    
84.6    
84.8    
84.9    
85.1    
85.2    
85.3    
85.5    
85.6    
85.8    
85.9    
86.0    
86.2    
86.3    
86.5    
86.6    
86.7    
86.9    
87.0    
87.2    
87.3    
87.4    
87.6    
87.7    
87.8    
88.0    
88.1    
88.3    
88.4    
88.5    
88.7    
88.8    
89.0    
89.1    
89.2    
89.4    
89.5    
89.7    
89.8    
89.9    
90.1    
90.2    
90.4    
90.5    
90.6    
90.8    
90.9    
91.1    
91.2    
91.3    
91.5    
91.6    
91.8    
91.9    
92.0    
92.2    
92.3    
92.5    
92.6    
92.7    
92.9    
93.0    
93.2    
93.3    
93.4    
93.6    
93.7    
93.9    
94.0    
94.1    
94.3    
94.4    
94.6    
94.7    
94.8    
95.0    
95.1    
95.3    
95.4    
95.5    
95.7    
95.8    
95.9    
96.1    
96.2    
96.4    
96.5    
96.6    
96.8    
96.9    
97.1    
97.2    
97.3    
97.5    
97.6    
97.8    
97.9    
98.0    
98.2    
98.3    
98.5    
98.6    
98.7    
98.9    
99.0    
99.2    
99.3    
99.4    
99.6    
99.7    
99.9    
-found 42 predictions from path traversal
Error with prediction: snap lend_intergenic: 4944, rend_intergenic: 4897  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14216, rend_intergenic: 7803  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25691, rend_intergenic: 21799  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37700, rend_intergenic: 33507  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41535, rend_intergenic: 41359  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50043, rend_intergenic: 41592  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57248, rend_intergenic: 54619  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59066, rend_intergenic: 57429  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64785, rend_intergenic: 60095  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81836, rend_intergenic: 79756  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92452, rend_intergenic: 91352  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94465, rend_intergenic: 92777  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98045, rend_intergenic: 94745  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141231, rend_intergenic: 136574  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149730, rend_intergenic: 147464  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153679, rend_intergenic: 150361  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166432, rend_intergenic: 161215  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194311, rend_intergenic: 185513  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support