-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_18/scaffold_18_13562439-13817709 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_44434-T1 Valid prediction for GeneMark_model.77288_t Valid prediction for snap_scaffold_18-snap.2936-T1 Couldn't classify 254806, 254894 Sorry, prediction GeneMark_model.77327_t fails validation. (ATG) TC 254239-254290 GT CTG (GCA) AG 254806-254894 GT CGG -recovered GeneMark_model.77327_t, initial, 254239, 254290 -recovered GeneMark_model.77327_t, internal, 254806, 254894 Valid prediction for snap_scaffold_18-snap.2921-T1 Couldn't classify 209202, 209537 Sorry, prediction pasa_asmbl_20220.p1 fails validation. (GTG) GG 209202-209537 AC GAA Valid prediction for snap_scaffold_18-snap.2914-T1 Sorry, intron length (5) is less than minimum required (10) Valid prediction for GeneMark_model.77254_t Valid prediction for GlimmerHMM_glimmerT_44427-T1 Valid prediction for GeneMark_model.77323_t Valid prediction for GeneMark_model.77258_t Valid prediction for GeneMark_model.77300_t Valid prediction for snap_scaffold_18-snap.2891-T1 Valid prediction for GeneMark_model.77317_t Valid prediction for snap_scaffold_18-snap.2903-T1 Couldn't classify 77226, 77381 Sorry, prediction pasa_asmbl_21045.p1 fails validation. (ATG) TC 76884-77060 GT AGG (GAA) AG 77226-77381 CG CAC -recovered pasa_asmbl_21045.p1, initial, 76884, 77060 Valid prediction for snap_scaffold_18-snap.2915-T1 Valid prediction for snap_scaffold_18-snap.2912-T1 Valid prediction for snap_scaffold_18-snap.2926-T1 Valid prediction for GeneMark_model.77325_t Valid prediction for GlimmerHMM_glimmerT_44411-T1 Couldn't classify 81283, 81447 Sorry, prediction pasa_asmbl_21046.p1 fails validation. (ATG) AA 80633-80641 GT AGG (ATC) AG 80907-81032 GT AGG (AGG) AG 81283-81447 GA AGG -recovered pasa_asmbl_21046.p1, initial, 80633, 80641 -recovered pasa_asmbl_21046.p1, internal, 80907, 81032 Valid prediction for snap_scaffold_18-snap.2906-T1 Valid prediction for GlimmerHMM_glimmerT_44416-T1 Valid prediction for GlimmerHMM_glimmerT_44422-T1 Valid prediction for GeneMark_model.77282_t Valid prediction for GeneMark_model.77256_t Valid prediction for GlimmerHMM_glimmerT_44428-T1 Valid prediction for snap_scaffold_18-snap.2919-T1 Valid prediction for GlimmerHMM_glimmerT_44415-T1 Valid prediction for GeneMark_model.77294_t Valid prediction for GlimmerHMM_glimmerT_44442-T1 Valid prediction for snap_scaffold_18-snap.2880-T1 Valid prediction for GeneMark_model.77274_t Valid prediction for snap_scaffold_18-snap.2905-T1 Valid prediction for GeneMark_model.77284_t Couldn't classify 254806, 254894 Sorry, prediction GlimmerHMM_glimmerT_44444-T1 fails validation. (ATG) AA 249354-249564 GT CGG (AAG) AG 250192-250330 GT ACG (CTC) AG 251126-251670 GT GTG (GCA) AG 254806-254894 GT CGG -recovered GlimmerHMM_glimmerT_44444-T1, initial, 249354, 249564 -recovered GlimmerHMM_glimmerT_44444-T1, internal, 250192, 250330 -recovered GlimmerHMM_glimmerT_44444-T1, internal, 251126, 251670 -recovered GlimmerHMM_glimmerT_44444-T1, internal, 254806, 254894 Valid prediction for GlimmerHMM_glimmerT_44408-T1 Valid prediction for GlimmerHMM_glimmerT_44443-T1 Valid prediction for snap_scaffold_18-snap.2895-T1 Valid prediction for GlimmerHMM_glimmerT_44437-T1 Valid prediction for snap_scaffold_18-snap.2917-T1 Valid prediction for GeneMark_model.77259_t Valid prediction for GeneMark_model.77261_t Valid prediction for GlimmerHMM_glimmerT_44420-T1 Valid prediction for GeneMark_model.77314_t Valid prediction for GeneMark_model.77308_t Valid prediction for GeneMark_model.77263_t Valid prediction for GlimmerHMM_glimmerT_44425-T1 Valid prediction for GeneMark_model.77267_t Valid prediction for GlimmerHMM_glimmerT_44424-T1 Valid prediction for GeneMark_model.77315_t Couldn't classify 99306, 99441 Sorry, prediction pasa_asmbl_21052.p1 fails validation. (GCG) GG 99306-99441 GT AAG (TGA) AG 99813-99906 GT AGG (GTC) AG 100010-100097 GT AGG (GAG) AG 100414-101088 GG GAG -recovered pasa_asmbl_21052.p1, terminal, 100414, 101088 -recovered pasa_asmbl_21052.p1, internal, 99813, 99906 -recovered pasa_asmbl_21052.p1, internal, 100010, 100097 Valid prediction for CodingQuarry_transcript_23888-T1 Valid prediction for GeneMark_model.77271_t Valid prediction for snap_scaffold_18-snap.2896-T1 Valid prediction for snap_scaffold_18-snap.2909-T1 Valid prediction for GlimmerHMM_glimmerT_44410-T1 Valid prediction for GeneMark_model.77272_t Valid prediction for snap_scaffold_18-snap.2888-T1 Valid prediction for GlimmerHMM_glimmerT_44412-T1 Valid prediction for GeneMark_model.77280_t Valid prediction for GeneMark_model.77253_t Valid prediction for GeneMark_model.77286_t Couldn't classify 240600, 240694 Sorry, prediction pasa_asmbl_21060.p1 fails validation. (CAG) GG 240600-240694 GT AGG (AGA) AG 240796-240881 GT AGG (CTT) AG 241059-241155 GT CTG (AGC) AG 241854-242021 GT ACG (GAT) AG 242267-242347 GT CGG (GGT) AG 242598-242739 GT AGG (GAG) AG 242923-243031 GT TGG (AGC) AG 243335-243555 AA GAA -recovered pasa_asmbl_21060.p1, terminal, 243335, 243555 -recovered pasa_asmbl_21060.p1, internal, 240796, 240881 -recovered pasa_asmbl_21060.p1, internal, 241059, 241155 -recovered pasa_asmbl_21060.p1, internal, 241854, 242021 -recovered pasa_asmbl_21060.p1, internal, 242267, 242347 -recovered pasa_asmbl_21060.p1, internal, 242598, 242739 -recovered pasa_asmbl_21060.p1, internal, 242923, 243031 Valid prediction for GeneMark_model.77269_t Valid prediction for GeneMark_model.77296_t Valid prediction for snap_scaffold_18-snap.2934-T1 Valid prediction for GeneMark_model.77298_t Valid prediction for snap_scaffold_18-snap.2930-T1 Valid prediction for snap_scaffold_18-snap.2908-T1 Valid prediction for snap_scaffold_18-snap.2901-T1 Valid prediction for GeneMark_model.77278_t Valid prediction for snap_scaffold_18-snap.2886-T1 Valid prediction for snap_scaffold_18-snap.2907-T1 Couldn't classify 84589, 84630 Sorry, prediction pasa_asmbl_21047.p1 fails validation. (CAA) AC 84589-84630 GT AGG (ATG) AG 84743-84820 GT GAG (ATG) AG 85240-85359 GT AGG (GCT) AG 85560-86159 AA AGA -recovered pasa_asmbl_21047.p1, initial, 84743, 84820 -recovered pasa_asmbl_21047.p1, initial, 85240, 85359 -recovered pasa_asmbl_21047.p1, terminal, 85560, 86159 -recovered pasa_asmbl_21047.p1, internal, 84743, 84820 -recovered pasa_asmbl_21047.p1, internal, 85240, 85359 Valid prediction for snap_scaffold_18-snap.2937-T1 Valid prediction for GeneMark_model.77276_t Valid prediction for GeneMark_model.77310_t Valid prediction for snap_scaffold_18-snap.2920-T1 Valid prediction for GeneMark_model.77292_t Valid prediction for GlimmerHMM_glimmerT_44414-T1 Valid prediction for snap_scaffold_18-snap.2890-T1 Valid prediction for snap_scaffold_18-snap.2935-T1 Valid prediction for GeneMark_model.77304_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.77270_t Valid prediction for pasa_asmbl_20215.p1 Valid prediction for GeneMark_model.77262_t Valid prediction for GlimmerHMM_glimmerT_44432-T1 Valid prediction for GlimmerHMM_glimmerT_44413-T1 Valid prediction for snap_scaffold_18-snap.2892-T1 Valid prediction for snap_scaffold_18-snap.2883-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GeneMark_model.77268_t Valid prediction for snap_scaffold_18-snap.2927-T1 Valid prediction for GeneMark_model.77322_t Valid prediction for GeneMark_model.77255_t Valid prediction for GlimmerHMM_glimmerT_44426-T1 Valid prediction for snap_scaffold_18-snap.2911-T1 Valid prediction for GeneMark_model.77266_t Valid prediction for snap_scaffold_18-snap.2933-T1 Valid prediction for GlimmerHMM_glimmerT_44418-T1 Valid prediction for snap_scaffold_18-snap.2916-T1 Valid prediction for GeneMark_model.77289_t Valid prediction for GeneMark_model.77321_t Valid prediction for GeneMark_model.77295_t Valid prediction for pasa_asmbl_20204.p1 Valid prediction for snap_scaffold_18-snap.2938-T1 Valid prediction for GeneMark_model.77273_t Valid prediction for snap_scaffold_18-snap.2928-T1 Valid prediction for GeneMark_model.77297_t Valid prediction for GeneMark_model.77257_t Valid prediction for GeneMark_model.77307_t Valid prediction for GlimmerHMM_glimmerT_44430-T1 Valid prediction for snap_scaffold_18-snap.2893-T1 Valid prediction for GeneMark_model.77316_t Valid prediction for CodingQuarry_transcript_23882-T1 Valid prediction for snap_scaffold_18-snap.2902-T1 Valid prediction for GlimmerHMM_glimmerT_44438-T1 Valid prediction for GlimmerHMM_glimmerT_44431-T1 Valid prediction for snap_scaffold_18-snap.2923-T1 Valid prediction for GeneMark_model.77299_t Valid prediction for GeneMark_model.77309_t Valid prediction for GlimmerHMM_glimmerT_44441-T1 Valid prediction for GeneMark_model.77281_t Valid prediction for snap_scaffold_18-snap.2898-T1 Valid prediction for GeneMark_model.77306_t Valid prediction for GeneMark_model.77319_t Couldn't classify 162521, 162586 Sorry, prediction pasa_asmbl_20206.p1 fails validation. (GGC) CC 162521-162586 GT AGG (GGA) AG 163162-163267 GT AGG (CGA) AG 163876-163963 GT AGG (TCC) AG 164105-164189 GT ATG (ACT) AG 164559-164664 GT AGG (GAA) AG 164891-164966 GT AGG (GGC) AG 165152-165209 GT AGG (AGT) AG 165487-165595 GT TGG (CCA) AG 166129-166190 CT GAC -recovered pasa_asmbl_20206.p1, terminal, 166129, 166190 -recovered pasa_asmbl_20206.p1, internal, 163162, 163267 -recovered pasa_asmbl_20206.p1, internal, 163876, 163963 -recovered pasa_asmbl_20206.p1, internal, 164105, 164189 -recovered pasa_asmbl_20206.p1, internal, 164559, 164664 -recovered pasa_asmbl_20206.p1, internal, 164891, 164966 -recovered pasa_asmbl_20206.p1, internal, 165152, 165209 -recovered pasa_asmbl_20206.p1, internal, 165487, 165595 Valid prediction for snap_scaffold_18-snap.2924-T1 Valid prediction for GeneMark_model.77301_t Valid prediction for GeneMark_model.77252_t Valid prediction for snap_scaffold_18-snap.2904-T1 Valid prediction for GeneMark_model.77279_t Valid prediction for GeneMark_model.77264_t Valid prediction for snap_scaffold_18-snap.2922-T1 Valid prediction for GeneMark_model.77250_t Valid prediction for GeneMark_model.77283_t Couldn't classify 156852, 156975 Couldn't classify 156997, 157098 Sorry, prediction CodingQuarry_transcript_23884-T1 fails validation. (ATG) CT 156560-156616 GT AGG (TCG) AG 156852-156975 CT CAC (GCT) AC 156997-157098 GT AGG (AGA) AG 157629-157777 GT AGG -recovered CodingQuarry_transcript_23884-T1, initial, 156560, 156616 -recovered CodingQuarry_transcript_23884-T1, terminal, 157629, 157777 -recovered CodingQuarry_transcript_23884-T1, internal, 157629, 157777 Couldn't classify 156125, 156152 Sorry, prediction pasa_asmbl_20213.p1 fails validation. (ATA) TT 156125-156152 GT AGG (CTT) AG 156504-156616 GT AGG (TCG) AG 156852-157098 GT AGG (AGA) AG 157629-157773 GT GGG (GAG) AG 158174-158306 GT AGG (GAT) AG 158477-158600 GT AGG (AGA) AG 158697-158769 GT AGG (AAC) AG 159222-159336 GT AGG (AAC) AG 159553-159661 GT AGG (CAA) AG 159792-159847 CC AGC add_exon() Sorry, pasa_asmbl_20213.p1 159553-159661-terminal-3 is invalid. -recovered pasa_asmbl_20213.p1, terminal, 159553, 159661 -recovered pasa_asmbl_20213.p1, terminal, 159792, 159847 -recovered pasa_asmbl_20213.p1, internal, 156504, 156616 -recovered pasa_asmbl_20213.p1, internal, 156852, 157098 -recovered pasa_asmbl_20213.p1, internal, 157629, 157773 -recovered pasa_asmbl_20213.p1, internal, 158174, 158306 -recovered pasa_asmbl_20213.p1, internal, 158477, 158600 -recovered pasa_asmbl_20213.p1, internal, 158697, 158769 -recovered pasa_asmbl_20213.p1, internal, 159222, 159336 -recovered pasa_asmbl_20213.p1, internal, 159553, 159661 Valid prediction for GlimmerHMM_glimmerT_44433-T1 Valid prediction for GeneMark_model.77275_t Valid prediction for GeneMark_model.77287_t Valid prediction for snap_scaffold_18-snap.2885-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GeneMark_model.77277_t Valid prediction for GeneMark_model.77290_t Valid prediction for CodingQuarry_transcript_23886-T1 Valid prediction for GlimmerHMM_glimmerT_44435-T1 Valid prediction for GeneMark_model.77318_t Valid prediction for GeneMark_model.77260_t Valid prediction for snap_scaffold_18-snap.2897-T1 Valid prediction for GlimmerHMM_glimmerT_44440-T1 Couldn't classify 156852, 157030 Couldn't classify 157052, 157098 Sorry, prediction CodingQuarry_transcript_23885-T1 fails validation. (ATG) CT 156560-156616 GT AGG (TCG) AG 156852-157030 AC GAA (TCA) GA 157052-157098 GT AGG (AGA) AG 157629-157773 GT GGG (GAG) AG 158174-158306 GT AGG (GAT) AG 158477-158600 GT AGG (AGA) AG 158697-158769 GT AGG (AAC) AG 159222-159336 GT AGG (AAC) AG 159553-159661 GT AGG (CAA) AG 159792-159847 CC AGC -recovered CodingQuarry_transcript_23885-T1, initial, 156560, 156616 add_exon() Sorry, CodingQuarry_transcript_23885-T1 159553-159661-terminal-3 is invalid. -recovered CodingQuarry_transcript_23885-T1, terminal, 159553, 159661 -recovered CodingQuarry_transcript_23885-T1, terminal, 159792, 159847 -recovered CodingQuarry_transcript_23885-T1, internal, 157629, 157773 -recovered CodingQuarry_transcript_23885-T1, internal, 158174, 158306 -recovered CodingQuarry_transcript_23885-T1, internal, 158477, 158600 -recovered CodingQuarry_transcript_23885-T1, internal, 158697, 158769 -recovered CodingQuarry_transcript_23885-T1, internal, 159222, 159336 -recovered CodingQuarry_transcript_23885-T1, internal, 159553, 159661 Valid prediction for GlimmerHMM_glimmerT_44409-T1 Valid prediction for snap_scaffold_18-snap.2894-T1 Valid prediction for GlimmerHMM_glimmerT_44436-T1 Valid prediction for GlimmerHMM_glimmerT_44429-T1 Valid prediction for GeneMark_model.77285_t Valid prediction for snap_scaffold_18-snap.2918-T1 Valid prediction for GeneMark_model.77293_t Valid prediction for GeneMark_model.77324_t Valid prediction for GlimmerHMM_glimmerT_44419-T1 Valid prediction for GlimmerHMM_glimmerT_44423-T1 Valid prediction for snap_scaffold_18-snap.2882-T1 Valid prediction for snap_scaffold_18-snap.2889-T1 Valid prediction for snap_scaffold_18-snap.2929-T1 Valid prediction for GeneMark_model.77251_t Valid prediction for snap_scaffold_18-snap.2910-T1 Valid prediction for snap_scaffold_18-snap.2913-T1 Valid prediction for snap_scaffold_18-snap.2925-T1 Valid prediction for snap_scaffold_18-snap.2884-T1 Valid prediction for snap_scaffold_18-snap.2900-T1 Valid prediction for GeneMark_model.77313_t Valid prediction for GeneMark_model.77326_t Valid prediction for GlimmerHMM_glimmerT_44439-T1 Valid prediction for snap_scaffold_18-snap.2931-T1 Valid prediction for GeneMark_model.77303_t Valid prediction for snap_scaffold_18-snap.2887-T1 Valid prediction for GlimmerHMM_glimmerT_44417-T1 Valid prediction for snap_scaffold_18-snap.2899-T1 Valid prediction for snap_scaffold_18-snap.2881-T1 Valid prediction for GeneMark_model.77311_t Valid prediction for CodingQuarry_transcript_23883-T1 Valid prediction for CodingQuarry_transcript_23887-T1 Valid prediction for snap_scaffold_18-snap.2932-T1 Couldn't classify 103016, 103129 Sorry, prediction pasa_asmbl_20216.p1 fails validation. (GGT) CA 103016-103129 GT ATG (GCT) AG 104629-104842 GT GGG (AGC) AG 105122-105235 GT AGG (GTT) AG 105732-105825 GT AAG (GCT) AG 106439-106577 GT AGG (GTG) AG 106846-107043 AC AGA -recovered pasa_asmbl_20216.p1, terminal, 106846, 107043 -recovered pasa_asmbl_20216.p1, internal, 104629, 104842 -recovered pasa_asmbl_20216.p1, internal, 105122, 105235 -recovered pasa_asmbl_20216.p1, internal, 105732, 105825 -recovered pasa_asmbl_20216.p1, internal, 106439, 106577 Couldn't classify 44740, 45047 Sorry, prediction pasa_asmbl_20222.p1 fails validation. (ATG) CA 42187-42331 GT AGG (AAC) AG 44740-45047 GG GGG -recovered pasa_asmbl_20222.p1, initial, 42187, 42331 Valid prediction for GlimmerHMM_glimmerT_44421-T1 Valid prediction for GeneMark_model.77265_t Valid prediction for GeneMark_model.77312_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 16989, rend_intergenic: 1748 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 29000, rend_intergenic: 23197 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 33096, rend_intergenic: 29490 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 44706, rend_intergenic: 33102 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 45953, rend_intergenic: 44900 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 65118, rend_intergenic: 50035 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 73694, rend_intergenic: 65157 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 86159, rend_intergenic: 76219 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 93950, rend_intergenic: 86200 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 115036, rend_intergenic: 101835 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 129628, rend_intergenic: 128348 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 131447, rend_intergenic: 129943 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 138636, rend_intergenic: 132016 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 147116, rend_intergenic: 139510 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 152600, rend_intergenic: 148229 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 170143, rend_intergenic: 153580 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 188129, rend_intergenic: 185902 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 211848, rend_intergenic: 188380 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 222828, rend_intergenic: 220600 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 231636, rend_intergenic: 223787 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 242061, rend_intergenic: 237240 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: GlimmerHMM lend_intergenic: 120672, rend_intergenic: 120669 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 255271 -exon list size: 1114 building trellis 0.1 0.2 0.3 0.4 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.3 1.4 1.5 1.6 1.7 1.8 1.9 2.0 2.1 2.2 2.2 2.3 2.4 2.5 2.6 2.7 2.8 2.9 3.0 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 3.9 3.9 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.7 4.8 4.9 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.6 5.7 5.8 5.9 6.0 6.1 6.2 6.3 6.4 6.5 6.5 6.6 6.7 6.8 6.9 7.0 7.1 7.2 7.3 7.3 7.4 7.5 7.6 7.7 7.8 7.9 8.0 8.1 8.2 8.2 8.3 8.4 8.5 8.6 8.7 8.8 8.9 9.0 9.1 9.1 9.2 9.3 9.4 9.5 9.6 9.7 9.8 9.9 9.9 10.0 10.1 10.2 10.3 10.4 10.5 10.6 10.7 10.8 10.8 10.9 11.0 11.1 11.2 11.3 11.4 11.5 11.6 11.6 11.7 11.8 11.9 12.0 12.1 12.2 12.3 12.4 12.5 12.5 12.6 12.7 12.8 12.9 13.0 13.1 13.2 13.3 13.4 13.4 13.5 13.6 13.7 13.8 13.9 14.0 14.1 14.2 14.2 14.3 14.4 14.5 14.6 14.7 14.8 14.9 15.0 15.1 15.1 15.2 15.3 15.4 15.5 15.6 15.7 15.8 15.9 15.9 16.0 16.1 16.2 16.3 16.4 16.5 16.6 16.7 16.8 16.8 16.9 17.0 17.1 17.2 17.3 17.4 17.5 17.6 17.7 17.7 17.8 17.9 18.0 18.1 18.2 18.3 18.4 18.5 18.5 18.6 18.7 18.8 18.9 19.0 19.1 19.2 19.3 19.4 19.4 19.5 19.6 19.7 19.8 19.9 20.0 20.1 20.2 20.3 20.3 20.4 20.5 20.6 20.7 20.8 20.9 21.0 21.1 21.1 21.2 21.3 21.4 21.5 21.6 21.7 21.8 21.9 22.0 22.0 22.1 22.2 22.3 22.4 22.5 22.6 22.7 22.8 22.8 22.9 23.0 23.1 23.2 23.3 23.4 23.5 23.6 23.7 23.7 23.8 23.9 24.0 24.1 24.2 24.3 24.4 24.5 24.6 24.6 24.7 24.8 24.9 25.0 25.1 25.2 25.3 25.4 25.4 25.5 25.6 25.7 25.8 25.9 26.0 26.1 26.2 26.3 26.3 26.4 26.5 26.6 26.7 26.8 26.9 27.0 27.1 27.2 27.2 27.3 27.4 27.5 27.6 27.7 27.8 27.9 28.0 28.0 28.1 28.2 28.3 28.4 28.5 28.6 28.7 28.8 28.9 28.9 29.0 29.1 29.2 29.3 29.4 29.5 29.6 29.7 29.7 29.8 29.9 30.0 30.1 30.2 30.3 30.4 30.5 30.6 30.6 30.7 30.8 30.9 31.0 31.1 31.2 31.3 31.4 31.5 31.5 31.6 31.7 31.8 31.9 32.0 32.1 32.2 32.3 32.3 32.4 32.5 32.6 32.7 32.8 32.9 33.0 33.1 33.2 33.2 33.3 33.4 33.5 33.6 33.7 33.8 33.9 34.0 34.1 34.1 34.2 34.3 34.4 34.5 34.6 34.7 34.8 34.9 34.9 35.0 35.1 35.2 35.3 35.4 35.5 35.6 35.7 35.8 35.8 35.9 36.0 36.1 36.2 36.3 36.4 36.5 36.6 36.6 36.7 36.8 36.9 37.0 37.1 37.2 37.3 37.4 37.5 37.5 37.6 37.7 37.8 37.9 38.0 38.1 38.2 38.3 38.4 38.4 38.5 38.6 38.7 38.8 38.9 39.0 39.1 39.2 39.2 39.3 39.4 39.5 39.6 39.7 39.8 39.9 40.0 40.1 40.1 40.2 40.3 40.4 40.5 40.6 40.7 40.8 40.9 40.9 41.0 41.1 41.2 41.3 41.4 41.5 41.6 41.7 41.8 41.8 41.9 42.0 42.1 42.2 42.3 42.4 42.5 42.6 42.7 42.7 42.8 42.9 43.0 43.1 43.2 43.3 43.4 43.5 43.5 43.6 43.7 43.8 43.9 44.0 44.1 44.2 44.3 44.4 44.4 44.5 44.6 44.7 44.8 44.9 45.0 45.1 45.2 45.3 45.3 45.4 45.5 45.6 45.7 45.8 45.9 46.0 46.1 46.1 46.2 46.3 46.4 46.5 46.6 46.7 46.8 46.9 47.0 47.0 47.1 47.2 47.3 47.4 47.5 47.6 47.7 47.8 47.8 47.9 48.0 48.1 48.2 48.3 48.4 48.5 48.6 48.7 48.7 48.8 48.9 49.0 49.1 49.2 49.3 49.4 49.5 49.6 49.6 49.7 49.8 49.9 50.0 50.1 50.2 50.3 50.4 50.4 50.5 50.6 50.7 50.8 50.9 51.0 51.1 51.2 51.3 51.3 51.4 51.5 51.6 51.7 51.8 51.9 52.0 52.1 52.2 52.2 52.3 52.4 52.5 52.6 52.7 52.8 52.9 53.0 53.0 53.1 53.2 53.3 53.4 53.5 53.6 53.7 53.8 53.9 53.9 54.0 54.1 54.2 54.3 54.4 54.5 54.6 54.7 54.7 54.8 54.9 55.0 55.1 55.2 55.3 55.4 55.5 55.6 55.6 55.7 55.8 55.9 56.0 56.1 56.2 56.3 56.4 56.5 56.5 56.6 56.7 56.8 56.9 57.0 57.1 57.2 57.3 57.3 57.4 57.5 57.6 57.7 57.8 57.9 58.0 58.1 58.2 58.2 58.3 58.4 58.5 58.6 58.7 58.8 58.9 59.0 59.1 59.1 59.2 59.3 59.4 59.5 59.6 59.7 59.8 59.9 59.9 60.0 60.1 60.2 60.3 60.4 60.5 60.6 60.7 60.8 60.8 60.9 61.0 61.1 61.2 61.3 61.4 61.5 61.6 61.6 61.7 61.8 61.9 62.0 62.1 62.2 62.3 62.4 62.5 62.5 62.6 62.7 62.8 62.9 63.0 63.1 63.2 63.3 63.4 63.4 63.5 63.6 63.7 63.8 63.9 64.0 64.1 64.2 64.2 64.3 64.4 64.5 64.6 64.7 64.8 64.9 65.0 65.1 65.1 65.2 65.3 65.4 65.5 65.6 65.7 65.8 65.9 65.9 66.0 66.1 66.2 66.3 66.4 66.5 66.6 66.7 66.8 66.8 66.9 67.0 67.1 67.2 67.3 67.4 67.5 67.6 67.7 67.7 67.8 67.9 68.0 68.1 68.2 68.3 68.4 68.5 68.5 68.6 68.7 68.8 68.9 69.0 69.1 69.2 69.3 69.4 69.4 69.5 69.6 69.7 69.8 69.9 70.0 70.1 70.2 70.3 70.3 70.4 70.5 70.6 70.7 70.8 70.9 71.0 71.1 71.1 71.2 71.3 71.4 71.5 71.6 71.7 71.8 71.9 72.0 72.0 72.1 72.2 72.3 72.4 72.5 72.6 72.7 72.8 72.8 72.9 73.0 73.1 73.2 73.3 73.4 73.5 73.6 73.7 73.7 73.8 73.9 74.0 74.1 74.2 74.3 74.4 74.5 74.6 74.6 74.7 74.8 74.9 75.0 75.1 75.2 75.3 75.4 75.4 75.5 75.6 75.7 75.8 75.9 76.0 76.1 76.2 76.3 76.3 76.4 76.5 76.6 76.7 76.8 76.9 77.0 77.1 77.2 77.2 77.3 77.4 77.5 77.6 77.7 77.8 77.9 78.0 78.0 78.1 78.2 78.3 78.4 78.5 78.6 78.7 78.8 78.9 78.9 79.0 79.1 79.2 79.3 79.4 79.5 79.6 79.7 79.7 79.8 79.9 80.0 80.1 80.2 80.3 80.4 80.5 80.6 80.6 80.7 80.8 80.9 81.0 81.1 81.2 81.3 81.4 81.5 81.5 81.6 81.7 81.8 81.9 82.0 82.1 82.2 82.3 82.3 82.4 82.5 82.6 82.7 82.8 82.9 83.0 83.1 83.2 83.2 83.3 83.4 83.5 83.6 83.7 83.8 83.9 84.0 84.1 84.1 84.2 84.3 84.4 84.5 84.6 84.7 84.8 84.9 84.9 85.0 85.1 85.2 85.3 85.4 85.5 85.6 85.7 85.8 85.8 85.9 86.0 86.1 86.2 86.3 86.4 86.5 86.6 86.6 86.7 86.8 86.9 87.0 87.1 87.2 87.3 87.4 87.5 87.5 87.6 87.7 87.8 87.9 88.0 88.1 88.2 88.3 88.4 88.4 88.5 88.6 88.7 88.8 88.9 89.0 89.1 89.2 89.2 89.3 89.4 89.5 89.6 89.7 89.8 89.9 90.0 90.1 90.1 90.2 90.3 90.4 90.5 90.6 90.7 90.8 90.9 90.9 91.0 91.1 91.2 91.3 91.4 91.5 91.6 91.7 91.8 91.8 91.9 92.0 92.1 92.2 92.3 92.4 92.5 92.6 92.7 92.7 92.8 92.9 93.0 93.1 93.2 93.3 93.4 93.5 93.5 93.6 93.7 93.8 93.9 94.0 94.1 94.2 94.3 94.4 94.4 94.5 94.6 94.7 94.8 94.9 95.0 95.1 95.2 95.3 95.3 95.4 95.5 95.6 95.7 95.8 95.9 96.0 96.1 96.1 96.2 96.3 96.4 96.5 96.6 96.7 96.8 96.9 97.0 97.0 97.1 97.2 97.3 97.4 97.5 97.6 97.7 97.8 97.8 97.9 98.0 98.1 98.2 98.3 98.4 98.5 98.6 98.7 98.7 98.8 98.9 99.0 99.1 99.2 99.3 99.4 99.5 99.6 99.6 99.7 99.8 99.9 -found 71 predictions from path traversal Error with prediction: snap lend_intergenic: 16989, rend_intergenic: 1748 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 29000, rend_intergenic: 23197 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 33096, rend_intergenic: 29490 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 44706, rend_intergenic: 33102 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 45953, rend_intergenic: 44900 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 65118, rend_intergenic: 50035 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 73694, rend_intergenic: 65157 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 86159, rend_intergenic: 76219 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 93950, rend_intergenic: 86200 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 115036, rend_intergenic: 101835 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 129628, rend_intergenic: 128348 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 131447, rend_intergenic: 129943 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 138636, rend_intergenic: 132016 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 147116, rend_intergenic: 139510 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 152600, rend_intergenic: 148229 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 170143, rend_intergenic: 153580 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 188129, rend_intergenic: 185902 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 211848, rend_intergenic: 188380 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 222828, rend_intergenic: 220600 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 231636, rend_intergenic: 223787 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 242061, rend_intergenic: 237240 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: GlimmerHMM lend_intergenic: 120672, rend_intergenic: 120669 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 33 predictions persist after filtering for low support