-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_18/scaffold_18_13143816-13436625 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_44370-T1 Couldn't classify 275300, 275470 Couldn't classify 276795, 276929 Sorry, prediction pasa_asmbl_21157.p1 fails validation. (AGC) AG 275300-275470 GT AGG (GAC) AG 275785-275943 GT AGG (GGC) AG 276104-276232 GT AGG (GAG) AG 276795-276929 CT CCC -recovered pasa_asmbl_21157.p1, internal, 275300, 275470 -recovered pasa_asmbl_21157.p1, internal, 275785, 275943 -recovered pasa_asmbl_21157.p1, internal, 276104, 276232 Valid prediction for GlimmerHMM_glimmerT_44365-T1 Valid prediction for GeneMark_model.77183_t Valid prediction for GeneMark_model.77187_t Valid prediction for GlimmerHMM_glimmerT_44389-T1 Valid prediction for GeneMark_model.77139_t Valid prediction for GeneMark_model.77129_t Valid prediction for CodingQuarry_transcript_23873-T1 Valid prediction for GlimmerHMM_glimmerT_44375-T1 Valid prediction for snap_scaffold_18-snap.2813-T1 Valid prediction for Augustus_model.g29669.t1 Valid prediction for snap_scaffold_18-snap.2811-T1 Valid prediction for GlimmerHMM_glimmerT_44390-T1 Valid prediction for Augustus_model.g29687.t1 Valid prediction for snap_scaffold_18-snap.2801-T1 Valid prediction for GlimmerHMM_glimmerT_44377-T1 Valid prediction for snap_scaffold_18-snap.2825-T1 Couldn't classify 267871, 268014 Couldn't classify 269393, 269539 Sorry, prediction pasa_asmbl_21033.p1 fails validation. (TGT) TG 267871-268014 GT AGG (GAG) AG 268387-268506 GT ACG (ATG) AG 268894-269052 GT AGG (GAG) AG 269393-269539 GA AGG -recovered pasa_asmbl_21033.p1, initial, 268894, 269052 -recovered pasa_asmbl_21033.p1, internal, 268387, 268506 -recovered pasa_asmbl_21033.p1, internal, 268894, 269052 Valid prediction for GeneMark_model.77185_t Valid prediction for snap_scaffold_18-snap.2843-T1 Valid prediction for GeneMark_model.77173_t Valid prediction for GeneMark_model.77188_t Valid prediction for GlimmerHMM_glimmerT_44382-T1 Valid prediction for GeneMark_model.77153_t Valid prediction for snap_scaffold_18-snap.2853-T1 Valid prediction for GeneMark_model.77163_t Valid prediction for snap_scaffold_18-snap.2820-T1 Valid prediction for GeneMark_model.77147_t Valid prediction for snap_scaffold_18-snap.2802-T1 Valid prediction for snap_scaffold_18-snap.2822-T1 Valid prediction for snap_scaffold_18-snap.2808-T1 Valid prediction for Augustus_model.g29679.t1 Valid prediction for GlimmerHMM_glimmerT_44385-T1 Couldn't classify 137510, 137675 Sorry, prediction pasa_asmbl_21029.p2 fails validation. (GTG) AG 137510-137675 GT GGG (GTA) AG 137886-138100 CC GAC -recovered pasa_asmbl_21029.p2, terminal, 137886, 138100 -recovered pasa_asmbl_21029.p2, internal, 137510, 137675 Valid prediction for Augustus_model.g29676.t1 Valid prediction for GeneMark_model.77137_t Valid prediction for GlimmerHMM_glimmerT_44363-T1 Valid prediction for GeneMark_model.77136_t Valid prediction for GeneMark_model.77159_t Valid prediction for GeneMark_model.77141_t Valid prediction for GlimmerHMM_glimmerT_44380-T1 Valid prediction for GeneMark_model.77213_t Valid prediction for snap_scaffold_18-snap.2850-T1 Valid prediction for GeneMark_model.77193_t Valid prediction for GeneMark_model.77177_t Valid prediction for GeneMark_model.77165_t Couldn't classify 123138, 123243 Sorry, prediction pasa_asmbl_21025.p1 fails validation. (AGG) GC 123138-123243 GT GGG (ATG) AG 123483-123616 GT CCG (GAG) AG 123754-123816 GT CAG (CAC) AG 124526-124663 TT AGT add_exon() Sorry, pasa_asmbl_21025.p1 123483-123616-initial-1 is invalid. -recovered pasa_asmbl_21025.p1, initial, 123483, 123616 -recovered pasa_asmbl_21025.p1, terminal, 124526, 124663 -recovered pasa_asmbl_21025.p1, internal, 123483, 123616 -recovered pasa_asmbl_21025.p1, internal, 123754, 123816 Valid prediction for snap_scaffold_18-snap.2848-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GeneMark_model.77181_t Valid prediction for pasa_asmbl_21028.p1 Valid prediction for GeneMark_model.77124_t Valid prediction for GeneMark_model.77161_t Valid prediction for Augustus_model.g29674.t1 Valid prediction for GlimmerHMM_glimmerT_44383-T1 Valid prediction for GlimmerHMM_glimmerT_44373-T1 Valid prediction for GlimmerHMM_glimmerT_44368-T1 Valid prediction for GeneMark_model.77179_t Valid prediction for GeneMark_model.77156_t Valid prediction for GeneMark_model.77149_t Valid prediction for CodingQuarry_transcript_23874-T1 Valid prediction for GlimmerHMM_glimmerT_44361-T1 Valid prediction for GeneMark_model.77144_t Valid prediction for snap_scaffold_18-snap.2824-T1 Valid prediction for snap_scaffold_18-snap.2846-T1 Valid prediction for GeneMark_model.77172_t Valid prediction for snap_scaffold_18-snap.2837-T1 Valid prediction for GeneMark_model.77168_t Valid prediction for snap_scaffold_18-snap.2806-T1 Valid prediction for Augustus_model.g29678.t1 Valid prediction for GeneMark_model.77206_t Valid prediction for GlimmerHMM_glimmerT_44376-T1 Valid prediction for snap_scaffold_18-snap.2810-T1 Valid prediction for pasa_asmbl_21035.p1 Valid prediction for Augustus_model.g29673.t1 Couldn't classify 231892, 231949 Sorry, prediction pasa_asmbl_21030.p1 fails validation. (CTT) GC 231892-231949 GT CGG (GGA) AG 232074-232124 GT AGG (AGG) AG 232777-232861 GT AAG (GTT) AG 234373-234499 GT AGG (TAC) AG 235036-235125 CC GAC -recovered pasa_asmbl_21030.p1, terminal, 235036, 235125 -recovered pasa_asmbl_21030.p1, internal, 232074, 232124 -recovered pasa_asmbl_21030.p1, internal, 232777, 232861 -recovered pasa_asmbl_21030.p1, internal, 234373, 234499 Valid prediction for GeneMark_model.77208_t Valid prediction for GeneMark_model.77133_t Valid prediction for GlimmerHMM_glimmerT_44374-T1 Valid prediction for GeneMark_model.77135_t Valid prediction for GlimmerHMM_glimmerT_44372-T1 Valid prediction for HiQ_model.g29684.t1 Valid prediction for GeneMark_model.77196_t Valid prediction for GeneMark_model.77192_t Valid prediction for snap_scaffold_18-snap.2830-T1 Couldn't classify 274925, 275017 Sorry, prediction pasa_asmbl_21034.p1 fails validation. (ATG) GC 271942-272035 GT AGG (ACC) AG 272111-272261 GT AGG (TGG) AG 272344-272458 GT AGG (GAA) AG 273395-273571 GT AGG (GTG) AG 273650-273828 GT AGG (GCC) AG 274105-274243 GT AGG (AGC) AG 274333-274512 GT AGG (GTC) AG 274925-275017 GC CGG -recovered pasa_asmbl_21034.p1, initial, 271942, 272035 -recovered pasa_asmbl_21034.p1, internal, 272111, 272261 -recovered pasa_asmbl_21034.p1, internal, 272344, 272458 -recovered pasa_asmbl_21034.p1, internal, 273395, 273571 -recovered pasa_asmbl_21034.p1, internal, 273650, 273828 -recovered pasa_asmbl_21034.p1, internal, 274105, 274243 -recovered pasa_asmbl_21034.p1, internal, 274333, 274512 -recovered pasa_asmbl_21034.p1, internal, 274925, 275017 Valid prediction for snap_scaffold_18-snap.2841-T1 Valid prediction for Augustus_model.g29683.t1 Valid prediction for GeneMark_model.77211_t Valid prediction for GeneMark_model.77150_t Valid prediction for GlimmerHMM_glimmerT_44391-T1 Valid prediction for GlimmerHMM_glimmerT_44379-T1 Couldn't classify 91335, 91550 Couldn't classify 97089, 97203 Sorry, prediction pasa_asmbl_21024.p1 fails validation. (AAG) AG 91335-91550 GT GGG (AGG) AG 91763-91948 GT AGG (GAC) AG 93534-93698 GT TGG (GCT) AG 93859-94014 GT AGG (ATC) AG 95130-95264 GT TGG (GAC) AG 95769-95931 GT TAG (TCT) AG 96130-96170 GT CGG (ACC) AG 96540-96682 GT AGG (CGT) AG 97089-97203 AC GAA -recovered pasa_asmbl_21024.p1, internal, 91335, 91550 -recovered pasa_asmbl_21024.p1, internal, 91763, 91948 -recovered pasa_asmbl_21024.p1, internal, 93534, 93698 -recovered pasa_asmbl_21024.p1, internal, 93859, 94014 -recovered pasa_asmbl_21024.p1, internal, 95130, 95264 -recovered pasa_asmbl_21024.p1, internal, 95769, 95931 -recovered pasa_asmbl_21024.p1, internal, 96130, 96170 -recovered pasa_asmbl_21024.p1, internal, 96540, 96682 Valid prediction for GeneMark_model.77198_t Couldn't classify 125996, 126028 Couldn't classify 126415, 126528 Sorry, prediction CodingQuarry_transcript_23872-T1 fails validation. (ATG) CT 125996-126028 AG CTA (AGA) CG 126415-126528 AG AAA Valid prediction for snap_scaffold_18-snap.2835-T1 Valid prediction for GeneMark_model.77190_t Valid prediction for GeneMark_model.77127_t Valid prediction for GlimmerHMM_glimmerT_44386-T1 Valid prediction for Augustus_model.g29682.t1 Valid prediction for snap_scaffold_18-snap.2833-T1 Couldn't classify 136318, 136413 Sorry, prediction pasa_asmbl_21074.p1 fails validation. (ATG) AA 133841-134070 GT AGG (TGT) AG 134525-134667 GT AGG (AGG) AG 135601-135756 GT AGG (CGG) AG 135865-135998 GT AGG (GGG) AG 136318-136413 TA GGT -recovered pasa_asmbl_21074.p1, initial, 133841, 134070 -recovered pasa_asmbl_21074.p1, internal, 134525, 134667 -recovered pasa_asmbl_21074.p1, internal, 135601, 135756 -recovered pasa_asmbl_21074.p1, internal, 135865, 135998 Valid prediction for Augustus_model.g29686.t1 Valid prediction for GeneMark_model.77176_t Valid prediction for GeneMark_model.77194_t Valid prediction for GeneMark_model.77200_t Valid prediction for GlimmerHMM_glimmerT_44369-T1 Valid prediction for GeneMark_model.77145_t Valid prediction for GeneMark_model.77202_t Valid prediction for GlimmerHMM_glimmerT_44367-T1 Valid prediction for snap_scaffold_18-snap.2799-T1 Valid prediction for snap_scaffold_18-snap.2805-T1 Valid prediction for GeneMark_model.77209_t Couldn't classify 125996, 126028 Sorry, prediction CodingQuarry_transcript_23871-T1 fails validation. (ATG) CT 125996-126028 AG CTA (AGA) AG 126211-126528 AG AAA -recovered CodingQuarry_transcript_23871-T1, terminal, 126211, 126528 Valid prediction for snap_scaffold_18-snap.2832-T1 Valid prediction for snap_scaffold_18-snap.2829-T1 Valid prediction for GeneMark_model.77170_t Valid prediction for HiQ_model.g29675.t1 Valid prediction for snap_scaffold_18-snap.2840-T1 Valid prediction for Augustus_model.g29677.t1 Valid prediction for GeneMark_model.77143_t Valid prediction for snap_scaffold_18-snap.2845-T1 Valid prediction for Augustus_model.g29680.t1 Valid prediction for snap_scaffold_18-snap.2815-T1 Valid prediction for GeneMark_model.77123_t Valid prediction for snap_scaffold_18-snap.2804-T1 Valid prediction for GeneMark_model.77131_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_18-snap.2851-T1 Valid prediction for snap_scaffold_18-snap.2818-T1 Valid prediction for Augustus_model.g29672.t1 Valid prediction for snap_scaffold_18-snap.2831-T1 Valid prediction for GeneMark_model.77128_t Valid prediction for CodingQuarry_transcript_23870-T1 Valid prediction for GeneMark_model.77160_t Valid prediction for snap_scaffold_18-snap.2834-T1 Valid prediction for Augustus_model.g29681.t1 Valid prediction for snap_scaffold_18-snap.2847-T1 Valid prediction for snap_scaffold_18-snap.2809-T1 Valid prediction for snap_scaffold_18-snap.2852-T1 Valid prediction for GlimmerHMM_glimmerT_44362-T1 Valid prediction for GeneMark_model.77146_t Valid prediction for GeneMark_model.77158_t Couldn't classify 75273, 75512 Sorry, prediction pasa_asmbl_20198.p1 fails validation. (ATG) AC 74834-75058 GT AGG (GTG) AG 75273-75512 AG TCA -recovered pasa_asmbl_20198.p1, initial, 74834, 75058 Valid prediction for snap_scaffold_18-snap.2836-T1 Valid prediction for snap_scaffold_18-snap.2800-T1 Valid prediction for GeneMark_model.77152_t Valid prediction for GeneMark_model.77203_t Valid prediction for GlimmerHMM_glimmerT_44384-T1 Couldn't classify 76765, 76904 Sorry, prediction pasa_asmbl_20197.p1 fails validation. (GAC) GT 76765-76904 GT TCG (TGA) AG 77072-77363 GT AGG (CCG) AG 77649-77759 GT AGG (GTG) AG 78018-78243 GT GAG (TGG) AG 78389-78529 GT TGG (AGC) AG 79570-79769 GT TGG (TTC) AG 80215-80447 GT AGG (GTG) AG 80967-81147 GT ACG (GTC) AG 81279-81397 GT CAG (TGT) AG 81851-82082 CA GAC -recovered pasa_asmbl_20197.p1, terminal, 81851, 82082 -recovered pasa_asmbl_20197.p1, internal, 77072, 77363 -recovered pasa_asmbl_20197.p1, internal, 77649, 77759 -recovered pasa_asmbl_20197.p1, internal, 78018, 78243 -recovered pasa_asmbl_20197.p1, internal, 78389, 78529 -recovered pasa_asmbl_20197.p1, internal, 79570, 79769 -recovered pasa_asmbl_20197.p1, internal, 80215, 80447 -recovered pasa_asmbl_20197.p1, internal, 80967, 81147 -recovered pasa_asmbl_20197.p1, internal, 81279, 81397 Valid prediction for GlimmerHMM_glimmerT_44364-T1 Valid prediction for GeneMark_model.77126_t Valid prediction for snap_scaffold_18-snap.2821-T1 Valid prediction for GlimmerHMM_glimmerT_44378-T1 Valid prediction for GeneMark_model.77174_t Valid prediction for snap_scaffold_18-snap.2842-T1 Couldn't classify 49206, 49247 Couldn't classify 51254, 51934 Sorry, prediction pasa_asmbl_20200.p1 fails validation. (GTA) TA 49206-49247 GT ACG (GTG) AG 49324-49688 GT AGG (TGG) AG 49982-50111 GT GGG (AAG) AG 50201-50275 GT CGG (GAA) AG 50592-50765 GT AGG (GCG) AG 51254-51934 GA AGG -recovered pasa_asmbl_20200.p1, internal, 49324, 49688 -recovered pasa_asmbl_20200.p1, internal, 49982, 50111 -recovered pasa_asmbl_20200.p1, internal, 50201, 50275 -recovered pasa_asmbl_20200.p1, internal, 50592, 50765 Valid prediction for GeneMark_model.77180_t Valid prediction for GeneMark_model.77205_t Valid prediction for GeneMark_model.77134_t Valid prediction for GeneMark_model.77122_t Valid prediction for GeneMark_model.77171_t Valid prediction for snap_scaffold_18-snap.2828-T1 Valid prediction for snap_scaffold_18-snap.2816-T1 Valid prediction for snap_scaffold_18-snap.2827-T1 Valid prediction for GeneMark_model.77191_t Valid prediction for GeneMark_model.77151_t Valid prediction for snap_scaffold_18-snap.2803-T1 Valid prediction for GeneMark_model.77154_t Valid prediction for GlimmerHMM_glimmerT_44366-T1 Valid prediction for GeneMark_model.77201_t Valid prediction for GeneMark_model.77175_t Valid prediction for snap_scaffold_18-snap.2839-T1 Valid prediction for GeneMark_model.77164_t Valid prediction for GlimmerHMM_glimmerT_44387-T1 Valid prediction for GeneMark_model.77148_t Valid prediction for GeneMark_model.77189_t Valid prediction for GeneMark_model.77210_t Valid prediction for GeneMark_model.77195_t Valid prediction for HiQ_model.g29685.t1 Valid prediction for GeneMark_model.77186_t Valid prediction for snap_scaffold_18-snap.2807-T1 Couldn't classify 52534, 52917 Sorry, prediction pasa_asmbl_20199.p1 fails validation. (AGT) GG 52534-52917 AG GAA Valid prediction for GeneMark_model.77155_t Valid prediction for snap_scaffold_18-snap.2817-T1 Valid prediction for snap_scaffold_18-snap.2849-T1 Valid prediction for CodingQuarry_transcript_23876-T1 Valid prediction for GeneMark_model.77140_t Valid prediction for Augustus_model.g29671.t1 Valid prediction for snap_scaffold_18-snap.2812-T1 Valid prediction for GeneMark_model.77166_t Valid prediction for GeneMark_model.77169_t Valid prediction for GeneMark_model.77207_t Valid prediction for snap_scaffold_18-snap.2844-T1 Valid prediction for snap_scaffold_18-snap.2826-T1 Valid prediction for GeneMark_model.77130_t Valid prediction for snap_scaffold_18-snap.2798-T1 Couldn't classify 256406, 256542 Sorry, prediction pasa_asmbl_20196.p1 fails validation. (ATT) AG 256406-256542 GT AGG (GAG) AG 256745-256845 GT TGG (ACC) AG 257350-257579 GT ATG (TTT) AG 257902-258083 GT AGG (GTC) AG 258524-258590 GT GGG (GAC) AG 258894-259040 GT TGG (ACG) AG 259327-259483 GT GGG (AGT) AG 259691-259791 GT ACG (GTT) AG 260056-260137 GT GAG (GGA) AG 260540-260691 GT AGG (GGA) AG 260964-261121 GT AGG (CTT) AG 261375-261522 GT GGG (GAG) AG 262252-262316 GT GAG (TTA) AG 262444-262519 GT GGG (CAA) AG 262786-262860 GT AGG (ATC) AG 263486-263590 CC AAC -recovered pasa_asmbl_20196.p1, terminal, 263486, 263590 -recovered pasa_asmbl_20196.p1, internal, 256406, 256542 -recovered pasa_asmbl_20196.p1, internal, 256745, 256845 -recovered pasa_asmbl_20196.p1, internal, 257350, 257579 -recovered pasa_asmbl_20196.p1, internal, 257902, 258083 -recovered pasa_asmbl_20196.p1, internal, 258524, 258590 -recovered pasa_asmbl_20196.p1, internal, 258894, 259040 -recovered pasa_asmbl_20196.p1, internal, 259327, 259483 -recovered pasa_asmbl_20196.p1, internal, 259691, 259791 -recovered pasa_asmbl_20196.p1, internal, 260056, 260137 -recovered pasa_asmbl_20196.p1, internal, 260540, 260691 -recovered pasa_asmbl_20196.p1, internal, 260964, 261121 -recovered pasa_asmbl_20196.p1, internal, 261375, 261522 -recovered pasa_asmbl_20196.p1, internal, 262252, 262316 -recovered pasa_asmbl_20196.p1, internal, 262444, 262519 -recovered pasa_asmbl_20196.p1, internal, 262786, 262860 Valid prediction for GeneMark_model.77157_t Valid prediction for snap_scaffold_18-snap.2819-T1 Valid prediction for GeneMark_model.77138_t Valid prediction for snap_scaffold_18-snap.2814-T1 Valid prediction for GeneMark_model.77125_t Valid prediction for snap_scaffold_18-snap.2823-T1 Valid prediction for GeneMark_model.77142_t Valid prediction for GlimmerHMM_glimmerT_44381-T1 Valid prediction for snap_scaffold_18-snap.2838-T1 Valid prediction for GeneMark_model.77199_t Couldn't classify 41832, 41946 Couldn't classify 48743, 48798 Sorry, prediction pasa_asmbl_20201.p1 fails validation. (CCG) AG 41832-41946 GT ACG (TCA) AG 42165-42283 GT AGG (GTA) AG 42667-42814 GT AGG (ATG) AG 44076-44208 GT AAG (CTA) AG 44746-44862 GT GGG (GCT) AG 45761-45875 GT AGG (ACA) AG 46426-46572 GT TGG (ATC) AG 47187-47301 GT GGG (GCT) AG 47432-47820 GT AGG (TCT) AG 47931-48053 GT AGG (AGG) AG 48540-48651 GT TGG (CCC) AG 48743-48798 GG CTG add_exon() Sorry, pasa_asmbl_20201.p1 44076-44208-initial-1 is invalid. -recovered pasa_asmbl_20201.p1, initial, 44076, 44208 -recovered pasa_asmbl_20201.p1, internal, 41832, 41946 -recovered pasa_asmbl_20201.p1, internal, 42165, 42283 -recovered pasa_asmbl_20201.p1, internal, 42667, 42814 -recovered pasa_asmbl_20201.p1, internal, 44076, 44208 -recovered pasa_asmbl_20201.p1, internal, 44746, 44862 -recovered pasa_asmbl_20201.p1, internal, 45761, 45875 -recovered pasa_asmbl_20201.p1, internal, 46426, 46572 -recovered pasa_asmbl_20201.p1, internal, 47187, 47301 -recovered pasa_asmbl_20201.p1, internal, 47432, 47820 -recovered pasa_asmbl_20201.p1, internal, 47931, 48053 -recovered pasa_asmbl_20201.p1, internal, 48540, 48651 Valid prediction for GeneMark_model.77178_t Valid prediction for HiQ_model.g29670.t1 Valid prediction for GlimmerHMM_glimmerT_44371-T1 Valid prediction for GlimmerHMM_glimmerT_44388-T1 Valid prediction for GeneMark_model.77212_t Valid prediction for snap_scaffold_18-snap.2854-T1 Valid prediction for GeneMark_model.77184_t Valid prediction for GeneMark_model.77197_t Valid prediction for GeneMark_model.77162_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 14518, rend_intergenic: 7872 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 29203, rend_intergenic: 16795 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 33488, rend_intergenic: 29221 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 64951, rend_intergenic: 33633 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 73015, rend_intergenic: 69465 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 80106, rend_intergenic: 77178 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 85641, rend_intergenic: 81872 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 89276, rend_intergenic: 87154 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 117252, rend_intergenic: 90419 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 118916, rend_intergenic: 117852 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 125151, rend_intergenic: 119335 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 130520, rend_intergenic: 127828 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 138100, rend_intergenic: 134872 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 159115, rend_intergenic: 141821 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 159886, rend_intergenic: 159623 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 168706, rend_intergenic: 161774 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 181040, rend_intergenic: 174499 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 194781, rend_intergenic: 181188 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 202899, rend_intergenic: 194872 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 214287, rend_intergenic: 203059 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 217977, rend_intergenic: 214906 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 222489, rend_intergenic: 219234 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 224071, rend_intergenic: 223885 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 228222, rend_intergenic: 224365 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 238067, rend_intergenic: 231895 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 242138, rend_intergenic: 239894 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 251135, rend_intergenic: 242495 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 280203, rend_intergenic: 268855 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 281321, rend_intergenic: 280637 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 292191, rend_intergenic: 282438 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 292810 -exon list size: 1319 building trellis 0.1 0.2 0.2 0.3 0.4 0.5 0.5 0.6 0.7 0.8 0.8 0.9 1.0 1.1 1.1 1.2 1.3 1.4 1.4 1.5 1.6 1.7 1.7 1.8 1.9 2.0 2.0 2.1 2.2 2.3 2.3 2.4 2.5 2.6 2.6 2.7 2.8 2.9 3.0 3.0 3.1 3.2 3.3 3.3 3.4 3.5 3.6 3.6 3.7 3.8 3.9 3.9 4.0 4.1 4.2 4.2 4.3 4.4 4.5 4.5 4.6 4.7 4.8 4.8 4.9 5.0 5.1 5.1 5.2 5.3 5.4 5.5 5.5 5.6 5.7 5.8 5.8 5.9 6.0 6.1 6.1 6.2 6.3 6.4 6.4 6.5 6.6 6.7 6.7 6.8 6.9 7.0 7.0 7.1 7.2 7.3 7.3 7.4 7.5 7.6 7.6 7.7 7.8 7.9 7.9 8.0 8.1 8.2 8.3 8.3 8.4 8.5 8.6 8.6 8.7 8.8 8.9 8.9 9.0 9.1 9.2 9.2 9.3 9.4 9.5 9.5 9.6 9.7 9.8 9.8 9.9 10.0 10.1 10.1 10.2 10.3 10.4 10.4 10.5 10.6 10.7 10.7 10.8 10.9 11.0 11.1 11.1 11.2 11.3 11.4 11.4 11.5 11.6 11.7 11.7 11.8 11.9 12.0 12.0 12.1 12.2 12.3 12.3 12.4 12.5 12.6 12.6 12.7 12.8 12.9 12.9 13.0 13.1 13.2 13.2 13.3 13.4 13.5 13.6 13.6 13.7 13.8 13.9 13.9 14.0 14.1 14.2 14.2 14.3 14.4 14.5 14.5 14.6 14.7 14.8 14.8 14.9 15.0 15.1 15.1 15.2 15.3 15.4 15.4 15.5 15.6 15.7 15.7 15.8 15.9 16.0 16.0 16.1 16.2 16.3 16.4 16.4 16.5 16.6 16.7 16.7 16.8 16.9 17.0 17.0 17.1 17.2 17.3 17.3 17.4 17.5 17.6 17.6 17.7 17.8 17.9 17.9 18.0 18.1 18.2 18.2 18.3 18.4 18.5 18.5 18.6 18.7 18.8 18.8 18.9 19.0 19.1 19.2 19.2 19.3 19.4 19.5 19.5 19.6 19.7 19.8 19.8 19.9 20.0 20.1 20.1 20.2 20.3 20.4 20.4 20.5 20.6 20.7 20.7 20.8 20.9 21.0 21.0 21.1 21.2 21.3 21.3 21.4 21.5 21.6 21.7 21.7 21.8 21.9 22.0 22.0 22.1 22.2 22.3 22.3 22.4 22.5 22.6 22.6 22.7 22.8 22.9 22.9 23.0 23.1 23.2 23.2 23.3 23.4 23.5 23.5 23.6 23.7 23.8 23.8 23.9 24.0 24.1 24.1 24.2 24.3 24.4 24.5 24.5 24.6 24.7 24.8 24.8 24.9 25.0 25.1 25.1 25.2 25.3 25.4 25.4 25.5 25.6 25.7 25.7 25.8 25.9 26.0 26.0 26.1 26.2 26.3 26.3 26.4 26.5 26.6 26.6 26.7 26.8 26.9 26.9 27.0 27.1 27.2 27.3 27.3 27.4 27.5 27.6 27.6 27.7 27.8 27.9 27.9 28.0 28.1 28.2 28.2 28.3 28.4 28.5 28.5 28.6 28.7 28.8 28.8 28.9 29.0 29.1 29.1 29.2 29.3 29.4 29.4 29.5 29.6 29.7 29.8 29.8 29.9 30.0 30.1 30.1 30.2 30.3 30.4 30.4 30.5 30.6 30.7 30.7 30.8 30.9 31.0 31.0 31.1 31.2 31.3 31.3 31.4 31.5 31.6 31.6 31.7 31.8 31.9 31.9 32.0 32.1 32.2 32.2 32.3 32.4 32.5 32.6 32.6 32.7 32.8 32.9 32.9 33.0 33.1 33.2 33.2 33.3 33.4 33.5 33.5 33.6 33.7 33.8 33.8 33.9 34.0 34.1 34.1 34.2 34.3 34.4 34.4 34.5 34.6 34.7 34.7 34.8 34.9 35.0 35.0 35.1 35.2 35.3 35.4 35.4 35.5 35.6 35.7 35.7 35.8 35.9 36.0 36.0 36.1 36.2 36.3 36.3 36.4 36.5 36.6 36.6 36.7 36.8 36.9 36.9 37.0 37.1 37.2 37.2 37.3 37.4 37.5 37.5 37.6 37.7 37.8 37.9 37.9 38.0 38.1 38.2 38.2 38.3 38.4 38.5 38.5 38.6 38.7 38.8 38.8 38.9 39.0 39.1 39.1 39.2 39.3 39.4 39.4 39.5 39.6 39.7 39.7 39.8 39.9 40.0 40.0 40.1 40.2 40.3 40.3 40.4 40.5 40.6 40.7 40.7 40.8 40.9 41.0 41.0 41.1 41.2 41.3 41.3 41.4 41.5 41.6 41.6 41.7 41.8 41.9 41.9 42.0 42.1 42.2 42.2 42.3 42.4 42.5 42.5 42.6 42.7 42.8 42.8 42.9 43.0 43.1 43.1 43.2 43.3 43.4 43.5 43.5 43.6 43.7 43.8 43.8 43.9 44.0 44.1 44.1 44.2 44.3 44.4 44.4 44.5 44.6 44.7 44.7 44.8 44.9 45.0 45.0 45.1 45.2 45.3 45.3 45.4 45.5 45.6 45.6 45.7 45.8 45.9 46.0 46.0 46.1 46.2 46.3 46.3 46.4 46.5 46.6 46.6 46.7 46.8 46.9 46.9 47.0 47.1 47.2 47.2 47.3 47.4 47.5 47.5 47.6 47.7 47.8 47.8 47.9 48.0 48.1 48.1 48.2 48.3 48.4 48.4 48.5 48.6 48.7 48.8 48.8 48.9 49.0 49.1 49.1 49.2 49.3 49.4 49.4 49.5 49.6 49.7 49.7 49.8 49.9 50.0 50.0 50.1 50.2 50.3 50.3 50.4 50.5 50.6 50.6 50.7 50.8 50.9 50.9 51.0 51.1 51.2 51.2 51.3 51.4 51.5 51.6 51.6 51.7 51.8 51.9 51.9 52.0 52.1 52.2 52.2 52.3 52.4 52.5 52.5 52.6 52.7 52.8 52.8 52.9 53.0 53.1 53.1 53.2 53.3 53.4 53.4 53.5 53.6 53.7 53.7 53.8 53.9 54.0 54.0 54.1 54.2 54.3 54.4 54.4 54.5 54.6 54.7 54.7 54.8 54.9 55.0 55.0 55.1 55.2 55.3 55.3 55.4 55.5 55.6 55.6 55.7 55.8 55.9 55.9 56.0 56.1 56.2 56.2 56.3 56.4 56.5 56.5 56.6 56.7 56.8 56.9 56.9 57.0 57.1 57.2 57.2 57.3 57.4 57.5 57.5 57.6 57.7 57.8 57.8 57.9 58.0 58.1 58.1 58.2 58.3 58.4 58.4 58.5 58.6 58.7 58.7 58.8 58.9 59.0 59.0 59.1 59.2 59.3 59.3 59.4 59.5 59.6 59.7 59.7 59.8 59.9 60.0 60.0 60.1 60.2 60.3 60.3 60.4 60.5 60.6 60.6 60.7 60.8 60.9 60.9 61.0 61.1 61.2 61.2 61.3 61.4 61.5 61.5 61.6 61.7 61.8 61.8 61.9 62.0 62.1 62.1 62.2 62.3 62.4 62.5 62.5 62.6 62.7 62.8 62.8 62.9 63.0 63.1 63.1 63.2 63.3 63.4 63.4 63.5 63.6 63.7 63.7 63.8 63.9 64.0 64.0 64.1 64.2 64.3 64.3 64.4 64.5 64.6 64.6 64.7 64.8 64.9 65.0 65.0 65.1 65.2 65.3 65.3 65.4 65.5 65.6 65.6 65.7 65.8 65.9 65.9 66.0 66.1 66.2 66.2 66.3 66.4 66.5 66.5 66.6 66.7 66.8 66.8 66.9 67.0 67.1 67.1 67.2 67.3 67.4 67.4 67.5 67.6 67.7 67.8 67.8 67.9 68.0 68.1 68.1 68.2 68.3 68.4 68.4 68.5 68.6 68.7 68.7 68.8 68.9 69.0 69.0 69.1 69.2 69.3 69.3 69.4 69.5 69.6 69.6 69.7 69.8 69.9 69.9 70.0 70.1 70.2 70.2 70.3 70.4 70.5 70.6 70.6 70.7 70.8 70.9 70.9 71.0 71.1 71.2 71.2 71.3 71.4 71.5 71.5 71.6 71.7 71.8 71.8 71.9 72.0 72.1 72.1 72.2 72.3 72.4 72.4 72.5 72.6 72.7 72.7 72.8 72.9 73.0 73.1 73.1 73.2 73.3 73.4 73.4 73.5 73.6 73.7 73.7 73.8 73.9 74.0 74.0 74.1 74.2 74.3 74.3 74.4 74.5 74.6 74.6 74.7 74.8 74.9 74.9 75.0 75.1 75.2 75.2 75.3 75.4 75.5 75.5 75.6 75.7 75.8 75.9 75.9 76.0 76.1 76.2 76.2 76.3 76.4 76.5 76.5 76.6 76.7 76.8 76.8 76.9 77.0 77.1 77.1 77.2 77.3 77.4 77.4 77.5 77.6 77.7 77.7 77.8 77.9 78.0 78.0 78.1 78.2 78.3 78.3 78.4 78.5 78.6 78.7 78.7 78.8 78.9 79.0 79.0 79.1 79.2 79.3 79.3 79.4 79.5 79.6 79.6 79.7 79.8 79.9 79.9 80.0 80.1 80.2 80.2 80.3 80.4 80.5 80.5 80.6 80.7 80.8 80.8 80.9 81.0 81.1 81.2 81.2 81.3 81.4 81.5 81.5 81.6 81.7 81.8 81.8 81.9 82.0 82.1 82.1 82.2 82.3 82.4 82.4 82.5 82.6 82.7 82.7 82.8 82.9 83.0 83.0 83.1 83.2 83.3 83.3 83.4 83.5 83.6 83.6 83.7 83.8 83.9 84.0 84.0 84.1 84.2 84.3 84.3 84.4 84.5 84.6 84.6 84.7 84.8 84.9 84.9 85.0 85.1 85.2 85.2 85.3 85.4 85.5 85.5 85.6 85.7 85.8 85.8 85.9 86.0 86.1 86.1 86.2 86.3 86.4 86.4 86.5 86.6 86.7 86.8 86.8 86.9 87.0 87.1 87.1 87.2 87.3 87.4 87.4 87.5 87.6 87.7 87.7 87.8 87.9 88.0 88.0 88.1 88.2 88.3 88.3 88.4 88.5 88.6 88.6 88.7 88.8 88.9 88.9 89.0 89.1 89.2 89.3 89.3 89.4 89.5 89.6 89.6 89.7 89.8 89.9 89.9 90.0 90.1 90.2 90.2 90.3 90.4 90.5 90.5 90.6 90.7 90.8 90.8 90.9 91.0 91.1 91.1 91.2 91.3 91.4 91.4 91.5 91.6 91.7 91.7 91.8 91.9 92.0 92.1 92.1 92.2 92.3 92.4 92.4 92.5 92.6 92.7 92.7 92.8 92.9 93.0 93.0 93.1 93.2 93.3 93.3 93.4 93.5 93.6 93.6 93.7 93.8 93.9 93.9 94.0 94.1 94.2 94.2 94.3 94.4 94.5 94.5 94.6 94.7 94.8 94.9 94.9 95.0 95.1 95.2 95.2 95.3 95.4 95.5 95.5 95.6 95.7 95.8 95.8 95.9 96.0 96.1 96.1 96.2 96.3 96.4 96.4 96.5 96.6 96.7 96.7 96.8 96.9 97.0 97.0 97.1 97.2 97.3 97.4 97.4 97.5 97.6 97.7 97.7 97.8 97.9 98.0 98.0 98.1 98.2 98.3 98.3 98.4 98.5 98.6 98.6 98.7 98.8 98.9 98.9 99.0 99.1 99.2 99.2 99.3 99.4 99.5 99.5 99.6 99.7 99.8 99.8 99.9 -found 39 predictions from path traversal Error with prediction: snap lend_intergenic: 14518, rend_intergenic: 7872 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 29203, rend_intergenic: 16795 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 33488, rend_intergenic: 29221 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 64951, rend_intergenic: 33633 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 73015, rend_intergenic: 69465 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 80106, rend_intergenic: 77178 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 85641, rend_intergenic: 81872 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 89276, rend_intergenic: 87154 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 117252, rend_intergenic: 90419 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 118916, rend_intergenic: 117852 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 125151, rend_intergenic: 119335 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 130520, rend_intergenic: 127828 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 138100, rend_intergenic: 134872 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 159115, rend_intergenic: 141821 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 159886, rend_intergenic: 159623 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 168706, rend_intergenic: 161774 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 181040, rend_intergenic: 174499 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 194781, rend_intergenic: 181188 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 202899, rend_intergenic: 194872 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 214287, rend_intergenic: 203059 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 217977, rend_intergenic: 214906 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 222489, rend_intergenic: 219234 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 224071, rend_intergenic: 223885 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 228222, rend_intergenic: 224365 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 238067, rend_intergenic: 231895 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 242138, rend_intergenic: 239894 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 251135, rend_intergenic: 242495 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 280203, rend_intergenic: 268855 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 281321, rend_intergenic: 280637 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 292191, rend_intergenic: 282438 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 25 predictions persist after filtering for low support