-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_18/scaffold_18_12900533-13147333

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.77064_t
Valid prediction for GeneMark_model.77111_t
Valid prediction for GeneMark_model.77083_t
Valid prediction for GlimmerHMM_glimmerT_44347-T1
Valid prediction for GlimmerHMM_glimmerT_44349-T1
Valid prediction for GeneMark_model.77067_t
Valid prediction for GlimmerHMM_glimmerT_44353-T1
Valid prediction for GeneMark_model.77090_t
Valid prediction for snap_scaffold_18-snap.2773-T1
Valid prediction for snap_scaffold_18-snap.2766-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_18-snap.2771-T1
Valid prediction for GlimmerHMM_glimmerT_44351-T1
Valid prediction for GeneMark_model.77076_t
Valid prediction for snap_scaffold_18-snap.2757-T1
Valid prediction for GeneMark_model.77116_t
Valid prediction for GeneMark_model.77057_t
Valid prediction for snap_scaffold_18-snap.2775-T1
Valid prediction for snap_scaffold_18-snap.2790-T1
Valid prediction for GlimmerHMM_glimmerT_44340-T1
Valid prediction for GeneMark_model.77094_t
Valid prediction for GlimmerHMM_glimmerT_44344-T1
Couldn't classify 29558, 30235
Sorry, prediction pasa_asmbl_21000.p1 fails validation.
(GGC)	 AA	29558-30235	TC	TGT
Valid prediction for GeneMark_model.77065_t
Valid prediction for Augustus_model.g29659.t1
Valid prediction for Augustus_model.g29656.t1
Valid prediction for GeneMark_model.77061_t
Valid prediction for GlimmerHMM_glimmerT_44356-T1
Valid prediction for snap_scaffold_18-snap.2797-T1
Valid prediction for snap_scaffold_18-snap.2778-T1
Valid prediction for snap_scaffold_18-snap.2758-T1
Valid prediction for pasa_asmbl_21009.p1
Valid prediction for GlimmerHMM_glimmerT_44357-T1
Valid prediction for GeneMark_model.77114_t
Valid prediction for GeneMark_model.77072_t
Valid prediction for GlimmerHMM_glimmerT_44342-T1
Valid prediction for GlimmerHMM_glimmerT_44352-T1
Valid prediction for Augustus_model.g29657.t1
Valid prediction for snap_scaffold_18-snap.2784-T1
Valid prediction for snap_scaffold_18-snap.2765-T1
Valid prediction for GeneMark_model.77098_t
Valid prediction for Augustus_model.g29667.t1
Valid prediction for GeneMark_model.77119_t
Valid prediction for GeneMark_model.77092_t
Valid prediction for GlimmerHMM_glimmerT_44343-T1
Valid prediction for Augustus_model.g29661.t1
Valid prediction for GeneMark_model.77059_t
Valid prediction for GeneMark_model.77062_t
Valid prediction for GeneMark_model.77107_t
Valid prediction for GeneMark_model.77104_t
Valid prediction for GeneMark_model.77109_t
Valid prediction for GlimmerHMM_glimmerT_44337-T1
Valid prediction for GeneMark_model.77097_t
Valid prediction for GlimmerHMM_glimmerT_44346-T1
Couldn't classify 30647, 32887
Sorry, prediction pasa_asmbl_21001.p1 fails validation.
(CCA)	 CG	30647-32887	TT	GAT
Valid prediction for snap_scaffold_18-snap.2793-T1
Valid prediction for GeneMark_model.77071_t
Couldn't classify 242721, 242755
Sorry, prediction pasa_asmbl_21016.p1 fails validation.
(ATG)	 TC	238707-238761	GT	AGG
(CCC)	 AG	239962-240042	GT	AGG
(AGA)	 AG	241303-241433	GT	ACG
(TCC)	 AG	241754-241847	GT	TGG
(CTA)	 AG	242721-242755	GA	ATG
-recovered pasa_asmbl_21016.p1, initial, 238707, 238761
add_exon() Sorry, pasa_asmbl_21016.p1 239962-240042-terminal-1 is invalid.
-recovered pasa_asmbl_21016.p1, terminal, 239962, 240042
-recovered pasa_asmbl_21016.p1, internal, 239962, 240042
-recovered pasa_asmbl_21016.p1, internal, 241303, 241433
-recovered pasa_asmbl_21016.p1, internal, 241754, 241847
Valid prediction for snap_scaffold_18-snap.2795-T1
Valid prediction for GeneMark_model.77102_t
Valid prediction for GeneMark_model.77055_t
Valid prediction for snap_scaffold_18-snap.2777-T1
Valid prediction for GeneMark_model.77054_t
Valid prediction for GeneMark_model.77069_t
Valid prediction for GeneMark_model.77118_t
Valid prediction for Augustus_model.g29666.t1
Valid prediction for GeneMark_model.77074_t
Valid prediction for CodingQuarry_transcript_23868-T1
Valid prediction for GeneMark_model.77080_t
Valid prediction for snap_scaffold_18-snap.2769-T1
Valid prediction for snap_scaffold_18-snap.2761-T1
Valid prediction for CodingQuarry_transcript_23869-T1
Valid prediction for GeneMark_model.77087_t
Valid prediction for GeneMark_model.77085_t
Valid prediction for snap_scaffold_18-snap.2763-T1
Valid prediction for snap_scaffold_18-snap.2786-T1
Valid prediction for GeneMark_model.77078_t
Valid prediction for snap_scaffold_18-snap.2789-T1
Couldn't classify 42594, 42705
Sorry, prediction pasa_asmbl_21006.p2 fails validation.
(ATG)	 AT	41534-41665	GT	AGG
(GGG)	 AG	41825-41907	GT	AGG
(TGA)	 AG	42594-42705	TG	GGT
-recovered pasa_asmbl_21006.p2, initial, 41534, 41665
-recovered pasa_asmbl_21006.p2, internal, 41825, 41907
Valid prediction for GlimmerHMM_glimmerT_44338-T1
Valid prediction for GlimmerHMM_glimmerT_44341-T1
Valid prediction for Augustus_model.g29658.t1
Valid prediction for snap_scaffold_18-snap.2772-T1
Valid prediction for Augustus_model.g29654.t1
Valid prediction for GeneMark_model.77101_t
Valid prediction for GeneMark_model.77106_t
Valid prediction for GlimmerHMM_glimmerT_44350-T1
Valid prediction for snap_scaffold_18-snap.2768-T1
Valid prediction for Augustus_model.g29664.t1
Valid prediction for GlimmerHMM_glimmerT_44359-T1
Valid prediction for snap_scaffold_18-snap.2762-T1
Valid prediction for pasa_asmbl_21012.p1
Valid prediction for GlimmerHMM_glimmerT_44358-T1
Valid prediction for snap_scaffold_18-snap.2759-T1
Valid prediction for snap_scaffold_18-snap.2787-T1
Valid prediction for snap_scaffold_18-snap.2780-T1
Valid prediction for GlimmerHMM_glimmerT_44348-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.77056_t
Valid prediction for Augustus_model.g29655.t1
Valid prediction for GeneMark_model.77060_t
Valid prediction for snap_scaffold_18-snap.2774-T1
Valid prediction for GeneMark_model.77113_t
Valid prediction for Augustus_model.g29653.t1
Valid prediction for GlimmerHMM_glimmerT_44354-T1
Valid prediction for snap_scaffold_18-snap.2776-T1
Valid prediction for Augustus_model.g29663.t1
Valid prediction for snap_scaffold_18-snap.2756-T1
Valid prediction for GeneMark_model.77103_t
Valid prediction for GeneMark_model.77066_t
Valid prediction for GeneMark_model.77063_t
Valid prediction for GeneMark_model.77086_t
Valid prediction for snap_scaffold_18-snap.2783-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_18-snap.2782-T1
Valid prediction for GlimmerHMM_glimmerT_44339-T1
Valid prediction for snap_scaffold_18-snap.2760-T1
Valid prediction for snap_scaffold_18-snap.2767-T1
Valid prediction for GlimmerHMM_glimmerT_44345-T1
Valid prediction for GeneMark_model.77108_t
Valid prediction for GeneMark_model.77115_t
Valid prediction for GeneMark_model.77068_t
Valid prediction for snap_scaffold_18-snap.2796-T1
Valid prediction for snap_scaffold_18-snap.2792-T1
Valid prediction for GeneMark_model.77095_t
Valid prediction for snap_scaffold_18-snap.2788-T1
Valid prediction for snap_scaffold_18-snap.2779-T1
Couldn't classify 208844, 209061
Sorry, prediction pasa_asmbl_20189.p1 fails validation.
(CCC)	 CT	208844-209061	GT	ATG
(CTT)	 AG	210043-210212	GT	AGG
(ATG)	 AG	210456-210531	GT	AGG
(GTA)	 AG	210720-210957	TG	GAT
-recovered pasa_asmbl_20189.p1, initial, 210456, 210531
-recovered pasa_asmbl_20189.p1, terminal, 210720, 210957
-recovered pasa_asmbl_20189.p1, internal, 210043, 210212
-recovered pasa_asmbl_20189.p1, internal, 210456, 210531
Valid prediction for snap_scaffold_18-snap.2791-T1
Valid prediction for GeneMark_model.77110_t
Valid prediction for GeneMark_model.77112_t
Valid prediction for snap_scaffold_18-snap.2785-T1
Valid prediction for snap_scaffold_18-snap.2794-T1
Valid prediction for GeneMark_model.77088_t
Valid prediction for snap_scaffold_18-snap.2770-T1
Valid prediction for Augustus_model.g29665.t1
Couldn't classify 90365, 90551
Sorry, prediction pasa_asmbl_20191.p1 fails validation.
(GAG)	 AG	90365-90551	GT	AGG
(GGT)	 AG	90890-90985	GT	AGG
(GAG)	 AG	91143-91312	GT	AGG
(GTG)	 AG	91575-91739	GT	AGG
(ATG)	 AG	92085-92192	GT	AGG
(GTG)	 AG	93566-93790	GC	AGG
-recovered pasa_asmbl_20191.p1, initial, 92085, 92192
add_exon() Sorry, pasa_asmbl_20191.p1 90890-90985-terminal-1 is invalid.
-recovered pasa_asmbl_20191.p1, terminal, 90890, 90985
-recovered pasa_asmbl_20191.p1, terminal, 93566, 93790
-recovered pasa_asmbl_20191.p1, internal, 90365, 90551
-recovered pasa_asmbl_20191.p1, internal, 90890, 90985
-recovered pasa_asmbl_20191.p1, internal, 91143, 91312
-recovered pasa_asmbl_20191.p1, internal, 91575, 91739
-recovered pasa_asmbl_20191.p1, internal, 92085, 92192
-recovered pasa_asmbl_20191.p1, internal, 93566, 93790
Valid prediction for GeneMark_model.77093_t
Valid prediction for GeneMark_model.77073_t
Valid prediction for GeneMark_model.77096_t
Valid prediction for GeneMark_model.77089_t
Valid prediction for GeneMark_model.77058_t
Valid prediction for snap_scaffold_18-snap.2764-T1
Valid prediction for CodingQuarry_transcript_23866-T1
Valid prediction for GeneMark_model.77117_t
Valid prediction for GeneMark_model.77120_t
Valid prediction for GeneMark_model.77077_t
Valid prediction for GeneMark_model.77091_t
Valid prediction for GeneMark_model.77099_t
Valid prediction for GlimmerHMM_glimmerT_44336-T1
Valid prediction for GeneMark_model.77084_t
Valid prediction for GeneMark_model.77075_t
Valid prediction for GeneMark_model.77081_t
Valid prediction for GeneMark_model.77082_t
Valid prediction for Augustus_model.g29662.t1
Valid prediction for GeneMark_model.77105_t
Valid prediction for HiQ_model.g29660.t1
Valid prediction for snap_scaffold_18-snap.2781-T1
Valid prediction for GlimmerHMM_glimmerT_44355-T1
Valid prediction for GeneMark_model.77070_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9411, rend_intergenic: 6711  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21253, rend_intergenic: 13492  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25139, rend_intergenic: 21363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36324, rend_intergenic: 35845  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40166, rend_intergenic: 36607  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46603, rend_intergenic: 42965  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59379, rend_intergenic: 46696  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65161, rend_intergenic: 59410  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79082, rend_intergenic: 77968  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85792, rend_intergenic: 81893  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112424, rend_intergenic: 85815  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121815, rend_intergenic: 112435  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129189, rend_intergenic: 122687  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152401, rend_intergenic: 138896  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165110, rend_intergenic: 153025  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173926, rend_intergenic: 167693  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204323, rend_intergenic: 175694  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 208660, rend_intergenic: 204693  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 222119, rend_intergenic: 211456  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 227032, rend_intergenic: 224563  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 231259, rend_intergenic: 227295  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 243283, rend_intergenic: 231927  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 246801
-exon list size: 995


building trellis

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51.0    
51.1    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
54.2    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.3    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 48 predictions from path traversal
Error with prediction: snap lend_intergenic: 9411, rend_intergenic: 6711  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21253, rend_intergenic: 13492  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25139, rend_intergenic: 21363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36324, rend_intergenic: 35845  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40166, rend_intergenic: 36607  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46603, rend_intergenic: 42965  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59379, rend_intergenic: 46696  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65161, rend_intergenic: 59410  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79082, rend_intergenic: 77968  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85792, rend_intergenic: 81893  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112424, rend_intergenic: 85815  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121815, rend_intergenic: 112435  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129189, rend_intergenic: 122687  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152401, rend_intergenic: 138896  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165110, rend_intergenic: 153025  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173926, rend_intergenic: 167693  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204323, rend_intergenic: 175694  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 208660, rend_intergenic: 204693  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 222119, rend_intergenic: 211456  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 227032, rend_intergenic: 224563  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 231259, rend_intergenic: 227295  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 243283, rend_intergenic: 231927  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 14141
-exon list size: 33


building trellis

2.9    
5.7    
8.6    
11.4    
14.3    
17.1    
20.0    
22.9    
25.7    
28.6    
31.4    
34.3    
37.1    
40.0    
42.9    
45.7    
48.6    
51.4    
54.3    
57.1    
60.0    
62.9    
65.7    
68.6    
71.4    
74.3    
77.1    
80.0    
82.9    
85.7    
88.6    
91.4    
94.3    
97.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 13491
-exon list size: 31


building trellis

3.0    
6.1    
9.1    
12.1    
15.2    
18.2    
21.2    
24.2    
27.3    
30.3    
33.3    
36.4    
39.4    
42.4    
45.5    
48.5    
51.5    
54.5    
57.6    
60.6    
63.6    
66.7    
69.7    
72.7    
75.8    
78.8    
81.8    
84.8    
87.9    
90.9    
93.9    
97.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11529
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11137
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11025
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support