-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_18/scaffold_18_12566342-12905416 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.77041_t Valid prediction for GlimmerHMM_glimmerT_44305-T1 Valid prediction for GeneMark_model.77053_t Valid prediction for GlimmerHMM_glimmerT_44302-T1 Valid prediction for GeneMark_model.76946_t Valid prediction for snap_scaffold_18-snap.2745-T1 Valid prediction for GeneMark_model.77039_t Valid prediction for Augustus_model.g29649.t1 Valid prediction for GeneMark_model.77007_t Couldn't classify 46830, 46859 Sorry, prediction pasa_asmbl_20993.p1 fails validation. (GGC) CA 46830-46859 GT AGG (AGT) AG 47164-47217 GT AGG (TAT) AG 47642-47708 GT AGG (GCT) AG 48064-48164 GT TGG (GGT) AG 48361-48505 GT GAG (TGC) AG 49346-49428 GT AGG (TTC) AG 51070-51219 AC GAA add_exon() Sorry, pasa_asmbl_20993.p1 48361-48505-terminal-3 is invalid. -recovered pasa_asmbl_20993.p1, terminal, 48361, 48505 -recovered pasa_asmbl_20993.p1, terminal, 51070, 51219 -recovered pasa_asmbl_20993.p1, internal, 47164, 47217 -recovered pasa_asmbl_20993.p1, internal, 47642, 47708 -recovered pasa_asmbl_20993.p1, internal, 48064, 48164 -recovered pasa_asmbl_20993.p1, internal, 48361, 48505 -recovered pasa_asmbl_20993.p1, internal, 49346, 49428 Valid prediction for snap_scaffold_18-snap.2739-T1 Valid prediction for GlimmerHMM_glimmerT_44314-T1 Valid prediction for snap_scaffold_18-snap.2714-T1 Valid prediction for HiQ_model.g29642.t1 Valid prediction for snap_scaffold_18-snap.2749-T1 Valid prediction for GeneMark_model.77037_t Valid prediction for GeneMark_model.76950_t Valid prediction for GeneMark_model.77029_t Valid prediction for GeneMark_model.76969_t Valid prediction for GeneMark_model.77013_t Valid prediction for snap_scaffold_18-snap.2746-T1 Valid prediction for GlimmerHMM_glimmerT_44307-T1 Valid prediction for GlimmerHMM_glimmerT_44317-T1 Valid prediction for Augustus_model.g29648.t1 Valid prediction for GeneMark_model.76971_t Valid prediction for Augustus_model.g29647.t1 Valid prediction for GeneMark_model.76951_t Valid prediction for GeneMark_model.76998_t Valid prediction for GlimmerHMM_glimmerT_44332-T1 Valid prediction for GlimmerHMM_glimmerT_44331-T1 Valid prediction for GeneMark_model.76983_t Valid prediction for Augustus_model.g29636.t1 Valid prediction for HiQ_model.g29640.t1 Valid prediction for GeneMark_model.77031_t Valid prediction for GeneMark_model.77033_t Valid prediction for GeneMark_model.77047_t Valid prediction for GlimmerHMM_glimmerT_44308-T1 Valid prediction for GeneMark_model.77040_t Valid prediction for snap_scaffold_18-snap.2718-T1 Valid prediction for GeneMark_model.77017_t Valid prediction for GeneMark_model.77043_t Valid prediction for GeneMark_model.76992_t Valid prediction for snap_scaffold_18-snap.2726-T1 Valid prediction for GeneMark_model.76981_t Valid prediction for GeneMark_model.77015_t Valid prediction for GlimmerHMM_glimmerT_44327-T1 Valid prediction for GeneMark_model.77026_t Valid prediction for GlimmerHMM_glimmerT_44312-T1 Valid prediction for Augustus_model.g29645.t1 Valid prediction for GeneMark_model.76990_t Valid prediction for snap_scaffold_18-snap.2735-T1 Valid prediction for snap_scaffold_18-snap.2734-T1 Couldn't classify 192730, 192807 Sorry, prediction GeneMark_model.77005_t fails validation. (ATG) TG 191902-191972 GT GGG (GGA) AG 191996-192205 GT AAG (AGA) AG 192230-192355 GT GGG (AGA) AG 192380-192385 GT GGG (AGA) AG 192416-192487 GT GTG (GCA) AG 192510-192563 GT AGG (AGG) AG 192730-192807 GT GAG -recovered GeneMark_model.77005_t, initial, 191902, 191972 -recovered GeneMark_model.77005_t, internal, 191996, 192205 -recovered GeneMark_model.77005_t, internal, 192230, 192355 -recovered GeneMark_model.77005_t, internal, 192380, 192385 -recovered GeneMark_model.77005_t, internal, 192416, 192487 -recovered GeneMark_model.77005_t, internal, 192510, 192563 -recovered GeneMark_model.77005_t, internal, 192730, 192807 Valid prediction for GeneMark_model.77025_t Valid prediction for GlimmerHMM_glimmerT_44303-T1 Valid prediction for GeneMark_model.77011_t Valid prediction for GeneMark_model.77003_t Valid prediction for snap_scaffold_18-snap.2729-T1 Valid prediction for GeneMark_model.76994_t Valid prediction for GeneMark_model.76988_t Valid prediction for GeneMark_model.77009_t Valid prediction for GlimmerHMM_glimmerT_44316-T1 Valid prediction for Augustus_model.g29643.t1 Valid prediction for GeneMark_model.76962_t Valid prediction for GlimmerHMM_glimmerT_44333-T1 Valid prediction for snap_scaffold_18-snap.2711-T1 Valid prediction for GeneMark_model.77000_t Valid prediction for snap_scaffold_18-snap.2732-T1 Valid prediction for GlimmerHMM_glimmerT_44315-T1 Valid prediction for GeneMark_model.76955_t Valid prediction for GlimmerHMM_glimmerT_44310-T1 Valid prediction for GeneMark_model.76979_t Valid prediction for GeneMark_model.76975_t Valid prediction for snap_scaffold_18-snap.2751-T1 Valid prediction for snap_scaffold_18-snap.2737-T1 Valid prediction for GeneMark_model.76948_t Valid prediction for GeneMark_model.77035_t Valid prediction for GlimmerHMM_glimmerT_44328-T1 Valid prediction for GlimmerHMM_glimmerT_44309-T1 Valid prediction for snap_scaffold_18-snap.2752-T1 Valid prediction for snap_scaffold_18-snap.2747-T1 Valid prediction for snap_scaffold_18-snap.2742-T1 Valid prediction for GeneMark_model.76953_t Valid prediction for Augustus_model.g29638.t1 Valid prediction for GeneMark_model.77051_t Valid prediction for GeneMark_model.76985_t Valid prediction for GeneMark_model.77023_t Couldn't classify 174251, 174421 Couldn't classify 178098, 178168 Sorry, prediction pasa_asmbl_20998.p1 fails validation. (GGC) CA 174251-174421 GT AGG (GTG) AG 174531-174765 GT AGG (ATG) AG 175230-175409 GT AGG (ACG) AG 178098-178168 GT CAG add_exon() Sorry, pasa_asmbl_20998.p1 175230-175409-initial-1 is invalid. -recovered pasa_asmbl_20998.p1, initial, 175230, 175409 add_exon() Sorry, pasa_asmbl_20998.p1 175230-175409-terminal-1 is invalid. -recovered pasa_asmbl_20998.p1, terminal, 175230, 175409 -recovered pasa_asmbl_20998.p1, internal, 174531, 174765 -recovered pasa_asmbl_20998.p1, internal, 175230, 175409 -recovered pasa_asmbl_20998.p1, internal, 178098, 178168 Valid prediction for Augustus_model.g29650.t1 Valid prediction for GeneMark_model.76957_t Valid prediction for GlimmerHMM_glimmerT_44326-T1 Valid prediction for snap_scaffold_18-snap.2743-T1 Valid prediction for GeneMark_model.76960_t Valid prediction for GeneMark_model.76973_t Valid prediction for GlimmerHMM_glimmerT_44334-T1 Valid prediction for snap_scaffold_18-snap.2705-T1 Valid prediction for GeneMark_model.77044_t Valid prediction for GeneMark_model.76977_t Valid prediction for pasa_asmbl_20991.p1 Valid prediction for Augustus_model.g29644.t1 Valid prediction for CodingQuarry_transcript_23864-T1 Valid prediction for snap_scaffold_18-snap.2731-T1 Couldn't classify 45376, 45497 Sorry, prediction pasa_asmbl_20992.p1 fails validation. (ATG) AC 44401-44482 GT GGG (GTT) AG 44629-44794 GT AGG (CAA) AG 45114-45220 GT GGG (GCG) AG 45376-45497 CG GAC -recovered pasa_asmbl_20992.p1, initial, 44401, 44482 -recovered pasa_asmbl_20992.p1, internal, 44629, 44794 -recovered pasa_asmbl_20992.p1, internal, 45114, 45220 Valid prediction for snap_scaffold_18-snap.2707-T1 Valid prediction for GeneMark_model.77021_t Valid prediction for GeneMark_model.76966_t Valid prediction for snap_scaffold_18-snap.2708-T1 Valid prediction for Augustus_model.g29646.t1 Valid prediction for GeneMark_model.77049_t Valid prediction for snap_scaffold_18-snap.2715-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_18-snap.2713-T1 Valid prediction for GeneMark_model.77010_t Valid prediction for GeneMark_model.76991_t Valid prediction for GlimmerHMM_glimmerT_44311-T1 Valid prediction for GeneMark_model.76949_t Valid prediction for GlimmerHMM_glimmerT_44304-T1 Valid prediction for snap_scaffold_18-snap.2748-T1 Valid prediction for GlimmerHMM_glimmerT_44321-T1 Valid prediction for GeneMark_model.77006_t Valid prediction for GeneMark_model.77034_t Valid prediction for GeneMark_model.76952_t Valid prediction for snap_scaffold_18-snap.2712-T1 Valid prediction for snap_scaffold_18-snap.2725-T1 Valid prediction for GeneMark_model.76959_t Valid prediction for GeneMark_model.76999_t Valid prediction for GeneMark_model.76963_t Valid prediction for GlimmerHMM_glimmerT_44325-T1 Valid prediction for GeneMark_model.77050_t Valid prediction for snap_scaffold_18-snap.2706-T1 Couldn't classify 68418, 68423 Sorry, prediction GeneMark_model.77028_t fails validation. (ATG) CC 63354-63370 GT GAG (GGA) AG 64571-64627 GT AGG (AGG) AG 64650-64756 GT CAG (AAG) AG 65717-65891 GT GGG (GAT) AG 65972-65986 GT CAG (GAA) AG 66014-66076 GT AAG (AAA) AG 66102-66326 GT GTG (GGA) AG 67081-67329 GT AAG (GGA) AG 67792-67908 GT GAG (GAG) AG 67965-68003 GT AAG (AGA) AG 68047-68064 GT GGG (GAC) AG 68089-68136 GT AAG (AGA) AG 68161-68355 GC CAG (AAG) AG 68382-68393 GT AGG (GAG) AG 68418-68423 GT ATG -recovered GeneMark_model.77028_t, initial, 63354, 63370 -recovered GeneMark_model.77028_t, internal, 64571, 64627 -recovered GeneMark_model.77028_t, internal, 64650, 64756 -recovered GeneMark_model.77028_t, internal, 65717, 65891 -recovered GeneMark_model.77028_t, internal, 65972, 65986 -recovered GeneMark_model.77028_t, internal, 66014, 66076 -recovered GeneMark_model.77028_t, internal, 66102, 66326 -recovered GeneMark_model.77028_t, internal, 67081, 67329 -recovered GeneMark_model.77028_t, internal, 67792, 67908 -recovered GeneMark_model.77028_t, internal, 67965, 68003 -recovered GeneMark_model.77028_t, internal, 68047, 68064 -recovered GeneMark_model.77028_t, internal, 68089, 68136 -recovered GeneMark_model.77028_t, internal, 68161, 68355 -recovered GeneMark_model.77028_t, internal, 68382, 68393 -recovered GeneMark_model.77028_t, internal, 68418, 68423 Valid prediction for GeneMark_model.77001_t Valid prediction for snap_scaffold_18-snap.2755-T1 Valid prediction for snap_scaffold_18-snap.2723-T1 Valid prediction for GeneMark_model.76965_t Valid prediction for GeneMark_model.77030_t Valid prediction for Augustus_model.g29652.t1 Couldn't classify 296549, 296581 Sorry, prediction pasa_asmbl_20186.p1 fails validation. (ATG) GC 295578-295746 GT CGG (GCT) AG 295847-295980 GT AGG (GTG) AG 296549-296581 TC GAT -recovered pasa_asmbl_20186.p1, initial, 295578, 295746 -recovered pasa_asmbl_20186.p1, internal, 295847, 295980 Valid prediction for CodingQuarry_transcript_23863-T1 Valid prediction for GeneMark_model.77038_t Valid prediction for Augustus_model.g29637.t1 Valid prediction for GlimmerHMM_glimmerT_44329-T1 Valid prediction for pasa_asmbl_20184.p1 Valid prediction for GeneMark_model.77042_t Valid prediction for GlimmerHMM_glimmerT_44330-T1 Valid prediction for snap_scaffold_18-snap.2736-T1 Valid prediction for snap_scaffold_18-snap.2727-T1 Valid prediction for snap_scaffold_18-snap.2741-T1 Valid prediction for Augustus_model.g29641.t1 Valid prediction for GeneMark_model.76978_t Valid prediction for GeneMark_model.76967_t Valid prediction for snap_scaffold_18-snap.2728-T1 Valid prediction for HiQ_model.g29639.t1 Valid prediction for snap_scaffold_18-snap.2733-T1 Valid prediction for snap_scaffold_18-snap.2720-T1 Valid prediction for GlimmerHMM_glimmerT_44320-T1 Valid prediction for GeneMark_model.77002_t Valid prediction for GeneMark_model.76986_t Valid prediction for GeneMark_model.77052_t Valid prediction for snap_scaffold_18-snap.2730-T1 Valid prediction for GeneMark_model.77032_t Valid prediction for snap_scaffold_18-snap.2724-T1 Valid prediction for GeneMark_model.76995_t Valid prediction for GeneMark_model.76997_t Valid prediction for GeneMark_model.76996_t Valid prediction for GeneMark_model.77018_t Valid prediction for GeneMark_model.76993_t Valid prediction for GlimmerHMM_glimmerT_44322-T1 Valid prediction for GeneMark_model.76956_t Valid prediction for GeneMark_model.77048_t Valid prediction for GeneMark_model.76945_t Valid prediction for snap_scaffold_18-snap.2744-T1 Valid prediction for GeneMark_model.77008_t Valid prediction for snap_scaffold_18-snap.2721-T1 Valid prediction for snap_scaffold_18-snap.2716-T1 Valid prediction for snap_scaffold_18-snap.2717-T1 Couldn't classify 74417, 74544 Sorry, prediction GeneMark_model.77027_t fails validation. (AGC) AG 74417-74544 GT TGG (GTG) AG 74982-75310 GT AAG (ATT) AG 75849-75938 GT AGG (AAA) AG 75972-76007 GT GGG (AGA) AG 76033-76041 GT GGG (AAG) AG 76068-76232 GT GAG (AGA) AG 76295-76453 GT GGG (TGG) AG 76848-76865 GT AGG (GAG) AG 76888-76914 GT GAG (AGA) AG 76937-77083 GT GAG (GCC) AG 77116-77214 GT GAG (CCC) AG 77242-77259 GT AGG (ACT) AG 77429-77497 GT AAG (GTC) AG 77530-77703 GT AAG (ACC) AG 77730-77960 GT GAG (CGG) AG 77981-77998 GT GGG (GAG) AG 78023-78367 GT AAG (AGG) AG 78467-78769 GT GAG (GAC) AG 78854-78874 GT AAG (GTC) AG 78907-78981 GT AAG (GTC) AG 79014-79034 GT AAG (GTC) AG 79067-79160 TA GAT -recovered GeneMark_model.77027_t, terminal, 79067, 79160 -recovered GeneMark_model.77027_t, internal, 74417, 74544 -recovered GeneMark_model.77027_t, internal, 74982, 75310 -recovered GeneMark_model.77027_t, internal, 75849, 75938 -recovered GeneMark_model.77027_t, internal, 75972, 76007 -recovered GeneMark_model.77027_t, internal, 76033, 76041 -recovered GeneMark_model.77027_t, internal, 76068, 76232 -recovered GeneMark_model.77027_t, internal, 76295, 76453 -recovered GeneMark_model.77027_t, internal, 76848, 76865 -recovered GeneMark_model.77027_t, internal, 76888, 76914 -recovered GeneMark_model.77027_t, internal, 76937, 77083 -recovered GeneMark_model.77027_t, internal, 77116, 77214 -recovered GeneMark_model.77027_t, internal, 77242, 77259 -recovered GeneMark_model.77027_t, internal, 77429, 77497 -recovered GeneMark_model.77027_t, internal, 77530, 77703 -recovered GeneMark_model.77027_t, internal, 77730, 77960 -recovered GeneMark_model.77027_t, internal, 77981, 77998 -recovered GeneMark_model.77027_t, internal, 78023, 78367 -recovered GeneMark_model.77027_t, internal, 78467, 78769 -recovered GeneMark_model.77027_t, internal, 78854, 78874 -recovered GeneMark_model.77027_t, internal, 78907, 78981 -recovered GeneMark_model.77027_t, internal, 79014, 79034 Valid prediction for GlimmerHMM_glimmerT_44318-T1 Valid prediction for GeneMark_model.77036_t Valid prediction for GeneMark_model.77046_t Valid prediction for Augustus_model.g29651.t1 Valid prediction for GlimmerHMM_glimmerT_44313-T1 Valid prediction for GeneMark_model.76989_t Valid prediction for GeneMark_model.76961_t Valid prediction for GeneMark_model.76964_t Valid prediction for GeneMark_model.76954_t Valid prediction for GeneMark_model.77012_t Valid prediction for GeneMark_model.77016_t Valid prediction for GeneMark_model.76982_t Valid prediction for GlimmerHMM_glimmerT_44324-T1 Valid prediction for snap_scaffold_18-snap.2738-T1 Valid prediction for GlimmerHMM_glimmerT_44306-T1 Couldn't classify 110705, 110747 Sorry, prediction GeneMark_model.77014_t fails validation. (ATG) GC 108957-109117 GT GGG (GGT) AG 109157-109162 GT AGG (AGA) AG 109185-109274 GT AAG (GAT) AG 110526-110597 GT GAG (GGG) AG 110705-110747 GT TGG -recovered GeneMark_model.77014_t, initial, 108957, 109117 -recovered GeneMark_model.77014_t, internal, 109157, 109162 -recovered GeneMark_model.77014_t, internal, 109185, 109274 -recovered GeneMark_model.77014_t, internal, 110526, 110597 -recovered GeneMark_model.77014_t, internal, 110705, 110747 Valid prediction for GeneMark_model.76972_t Valid prediction for GeneMark_model.76947_t Valid prediction for GeneMark_model.76968_t Valid prediction for snap_scaffold_18-snap.2709-T1 Valid prediction for snap_scaffold_18-snap.2740-T1 Valid prediction for GeneMark_model.77004_t Valid prediction for snap_scaffold_18-snap.2710-T1 Valid prediction for GeneMark_model.77045_t Valid prediction for GeneMark_model.77022_t Valid prediction for GeneMark_model.76984_t Valid prediction for GeneMark_model.76970_t Valid prediction for snap_scaffold_18-snap.2722-T1 Valid prediction for GeneMark_model.77019_t Valid prediction for snap_scaffold_18-snap.2750-T1 Valid prediction for snap_scaffold_18-snap.2719-T1 Valid prediction for GeneMark_model.77024_t Valid prediction for snap_scaffold_18-snap.2753-T1 Couldn't classify 297837, 297970 Couldn't classify 299242, 299288 Sorry, prediction pasa_asmbl_20244.p1 fails validation. (CAG) TG 297837-297970 GT AGG (TCT) AG 298668-298816 GT AGG (CCT) AG 299242-299288 GA TGG -recovered pasa_asmbl_20244.p1, internal, 298668, 298816 Valid prediction for GlimmerHMM_glimmerT_44323-T1 Valid prediction for GlimmerHMM_glimmerT_44319-T1 Valid prediction for GeneMark_model.76980_t Valid prediction for GeneMark_model.76976_t Valid prediction for GeneMark_model.76958_t Valid prediction for GeneMark_model.77020_t Valid prediction for snap_scaffold_18-snap.2754-T1 Valid prediction for GeneMark_model.76974_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8321, rend_intergenic: 4097 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 16542, rend_intergenic: 8394 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 25293, rend_intergenic: 23930 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 45637, rend_intergenic: 39268 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 51400, rend_intergenic: 47762 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 123759, rend_intergenic: 54680 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 158607, rend_intergenic: 126919 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 183081, rend_intergenic: 173092 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 192209, rend_intergenic: 187555 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 204350, rend_intergenic: 192474 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 214360, rend_intergenic: 205069 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 234203, rend_intergenic: 215026 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 246694, rend_intergenic: 237378 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 258315, rend_intergenic: 253879 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 260290, rend_intergenic: 258759 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 275663, rend_intergenic: 261227 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 280925, rend_intergenic: 275863 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 297157, rend_intergenic: 290156 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 310276, rend_intergenic: 298868 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 315929, rend_intergenic: 311470 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 318715, rend_intergenic: 316649 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 322291, rend_intergenic: 318757 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 333816, rend_intergenic: 322627 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 339075 -exon list size: 1465 building trellis 0.1 0.1 0.2 0.3 0.3 0.4 0.5 0.5 0.6 0.7 0.7 0.8 0.9 1.0 1.0 1.1 1.2 1.2 1.3 1.4 1.4 1.5 1.6 1.6 1.7 1.8 1.8 1.9 2.0 2.0 2.1 2.2 2.2 2.3 2.4 2.5 2.5 2.6 2.7 2.7 2.8 2.9 2.9 3.0 3.1 3.1 3.2 3.3 3.3 3.4 3.5 3.5 3.6 3.7 3.7 3.8 3.9 4.0 4.0 4.1 4.2 4.2 4.3 4.4 4.4 4.5 4.6 4.6 4.7 4.8 4.8 4.9 5.0 5.0 5.1 5.2 5.2 5.3 5.4 5.5 5.5 5.6 5.7 5.7 5.8 5.9 5.9 6.0 6.1 6.1 6.2 6.3 6.3 6.4 6.5 6.5 6.6 6.7 6.7 6.8 6.9 7.0 7.0 7.1 7.2 7.2 7.3 7.4 7.4 7.5 7.6 7.6 7.7 7.8 7.8 7.9 8.0 8.0 8.1 8.2 8.2 8.3 8.4 8.5 8.5 8.6 8.7 8.7 8.8 8.9 8.9 9.0 9.1 9.1 9.2 9.3 9.3 9.4 9.5 9.5 9.6 9.7 9.7 9.8 9.9 10.0 10.0 10.1 10.2 10.2 10.3 10.4 10.4 10.5 10.6 10.6 10.7 10.8 10.8 10.9 11.0 11.0 11.1 11.2 11.2 11.3 11.4 11.5 11.5 11.6 11.7 11.7 11.8 11.9 11.9 12.0 12.1 12.1 12.2 12.3 12.3 12.4 12.5 12.5 12.6 12.7 12.7 12.8 12.9 13.0 13.0 13.1 13.2 13.2 13.3 13.4 13.4 13.5 13.6 13.6 13.7 13.8 13.8 13.9 14.0 14.0 14.1 14.2 14.2 14.3 14.4 14.5 14.5 14.6 14.7 14.7 14.8 14.9 14.9 15.0 15.1 15.1 15.2 15.3 15.3 15.4 15.5 15.5 15.6 15.7 15.7 15.8 15.9 16.0 16.0 16.1 16.2 16.2 16.3 16.4 16.4 16.5 16.6 16.6 16.7 16.8 16.8 16.9 17.0 17.0 17.1 17.2 17.2 17.3 17.4 17.5 17.5 17.6 17.7 17.7 17.8 17.9 17.9 18.0 18.1 18.1 18.2 18.3 18.3 18.4 18.5 18.5 18.6 18.7 18.7 18.8 18.9 19.0 19.0 19.1 19.2 19.2 19.3 19.4 19.4 19.5 19.6 19.6 19.7 19.8 19.8 19.9 20.0 20.0 20.1 20.2 20.2 20.3 20.4 20.4 20.5 20.6 20.7 20.7 20.8 20.9 20.9 21.0 21.1 21.1 21.2 21.3 21.3 21.4 21.5 21.5 21.6 21.7 21.7 21.8 21.9 21.9 22.0 22.1 22.2 22.2 22.3 22.4 22.4 22.5 22.6 22.6 22.7 22.8 22.8 22.9 23.0 23.0 23.1 23.2 23.2 23.3 23.4 23.4 23.5 23.6 23.7 23.7 23.8 23.9 23.9 24.0 24.1 24.1 24.2 24.3 24.3 24.4 24.5 24.5 24.6 24.7 24.7 24.8 24.9 24.9 25.0 25.1 25.2 25.2 25.3 25.4 25.4 25.5 25.6 25.6 25.7 25.8 25.8 25.9 26.0 26.0 26.1 26.2 26.2 26.3 26.4 26.4 26.5 26.6 26.7 26.7 26.8 26.9 26.9 27.0 27.1 27.1 27.2 27.3 27.3 27.4 27.5 27.5 27.6 27.7 27.7 27.8 27.9 27.9 28.0 28.1 28.2 28.2 28.3 28.4 28.4 28.5 28.6 28.6 28.7 28.8 28.8 28.9 29.0 29.0 29.1 29.2 29.2 29.3 29.4 29.4 29.5 29.6 29.7 29.7 29.8 29.9 29.9 30.0 30.1 30.1 30.2 30.3 30.3 30.4 30.5 30.5 30.6 30.7 30.7 30.8 30.9 30.9 31.0 31.1 31.2 31.2 31.3 31.4 31.4 31.5 31.6 31.6 31.7 31.8 31.8 31.9 32.0 32.0 32.1 32.2 32.2 32.3 32.4 32.4 32.5 32.6 32.7 32.7 32.8 32.9 32.9 33.0 33.1 33.1 33.2 33.3 33.3 33.4 33.5 33.5 33.6 33.7 33.7 33.8 33.9 33.9 34.0 34.1 34.2 34.2 34.3 34.4 34.4 34.5 34.6 34.6 34.7 34.8 34.8 34.9 35.0 35.0 35.1 35.2 35.2 35.3 35.4 35.4 35.5 35.6 35.7 35.7 35.8 35.9 35.9 36.0 36.1 36.1 36.2 36.3 36.3 36.4 36.5 36.5 36.6 36.7 36.7 36.8 36.9 36.9 37.0 37.1 37.2 37.2 37.3 37.4 37.4 37.5 37.6 37.6 37.7 37.8 37.8 37.9 38.0 38.0 38.1 38.2 38.2 38.3 38.4 38.4 38.5 38.6 38.7 38.7 38.8 38.9 38.9 39.0 39.1 39.1 39.2 39.3 39.3 39.4 39.5 39.5 39.6 39.7 39.7 39.8 39.9 39.9 40.0 40.1 40.1 40.2 40.3 40.4 40.4 40.5 40.6 40.6 40.7 40.8 40.8 40.9 41.0 41.0 41.1 41.2 41.2 41.3 41.4 41.4 41.5 41.6 41.6 41.7 41.8 41.9 41.9 42.0 42.1 42.1 42.2 42.3 42.3 42.4 42.5 42.5 42.6 42.7 42.7 42.8 42.9 42.9 43.0 43.1 43.1 43.2 43.3 43.4 43.4 43.5 43.6 43.6 43.7 43.8 43.8 43.9 44.0 44.0 44.1 44.2 44.2 44.3 44.4 44.4 44.5 44.6 44.6 44.7 44.8 44.9 44.9 45.0 45.1 45.1 45.2 45.3 45.3 45.4 45.5 45.5 45.6 45.7 45.7 45.8 45.9 45.9 46.0 46.1 46.1 46.2 46.3 46.4 46.4 46.5 46.6 46.6 46.7 46.8 46.8 46.9 47.0 47.0 47.1 47.2 47.2 47.3 47.4 47.4 47.5 47.6 47.6 47.7 47.8 47.9 47.9 48.0 48.1 48.1 48.2 48.3 48.3 48.4 48.5 48.5 48.6 48.7 48.7 48.8 48.9 48.9 49.0 49.1 49.1 49.2 49.3 49.4 49.4 49.5 49.6 49.6 49.7 49.8 49.8 49.9 50.0 50.0 50.1 50.2 50.2 50.3 50.4 50.4 50.5 50.6 50.6 50.7 50.8 50.9 50.9 51.0 51.1 51.1 51.2 51.3 51.3 51.4 51.5 51.5 51.6 51.7 51.7 51.8 51.9 51.9 52.0 52.1 52.1 52.2 52.3 52.4 52.4 52.5 52.6 52.6 52.7 52.8 52.8 52.9 53.0 53.0 53.1 53.2 53.2 53.3 53.4 53.4 53.5 53.6 53.6 53.7 53.8 53.9 53.9 54.0 54.1 54.1 54.2 54.3 54.3 54.4 54.5 54.5 54.6 54.7 54.7 54.8 54.9 54.9 55.0 55.1 55.1 55.2 55.3 55.4 55.4 55.5 55.6 55.6 55.7 55.8 55.8 55.9 56.0 56.0 56.1 56.2 56.2 56.3 56.4 56.4 56.5 56.6 56.6 56.7 56.8 56.9 56.9 57.0 57.1 57.1 57.2 57.3 57.3 57.4 57.5 57.5 57.6 57.7 57.7 57.8 57.9 57.9 58.0 58.1 58.1 58.2 58.3 58.4 58.4 58.5 58.6 58.6 58.7 58.8 58.8 58.9 59.0 59.0 59.1 59.2 59.2 59.3 59.4 59.4 59.5 59.6 59.6 59.7 59.8 59.9 59.9 60.0 60.1 60.1 60.2 60.3 60.3 60.4 60.5 60.5 60.6 60.7 60.7 60.8 60.9 60.9 61.0 61.1 61.1 61.2 61.3 61.3 61.4 61.5 61.6 61.6 61.7 61.8 61.8 61.9 62.0 62.0 62.1 62.2 62.2 62.3 62.4 62.4 62.5 62.6 62.6 62.7 62.8 62.8 62.9 63.0 63.1 63.1 63.2 63.3 63.3 63.4 63.5 63.5 63.6 63.7 63.7 63.8 63.9 63.9 64.0 64.1 64.1 64.2 64.3 64.3 64.4 64.5 64.6 64.6 64.7 64.8 64.8 64.9 65.0 65.0 65.1 65.2 65.2 65.3 65.4 65.4 65.5 65.6 65.6 65.7 65.8 65.8 65.9 66.0 66.1 66.1 66.2 66.3 66.3 66.4 66.5 66.5 66.6 66.7 66.7 66.8 66.9 66.9 67.0 67.1 67.1 67.2 67.3 67.3 67.4 67.5 67.6 67.6 67.7 67.8 67.8 67.9 68.0 68.0 68.1 68.2 68.2 68.3 68.4 68.4 68.5 68.6 68.6 68.7 68.8 68.8 68.9 69.0 69.1 69.1 69.2 69.3 69.3 69.4 69.5 69.5 69.6 69.7 69.7 69.8 69.9 69.9 70.0 70.1 70.1 70.2 70.3 70.3 70.4 70.5 70.6 70.6 70.7 70.8 70.8 70.9 71.0 71.0 71.1 71.2 71.2 71.3 71.4 71.4 71.5 71.6 71.6 71.7 71.8 71.8 71.9 72.0 72.1 72.1 72.2 72.3 72.3 72.4 72.5 72.5 72.6 72.7 72.7 72.8 72.9 72.9 73.0 73.1 73.1 73.2 73.3 73.3 73.4 73.5 73.6 73.6 73.7 73.8 73.8 73.9 74.0 74.0 74.1 74.2 74.2 74.3 74.4 74.4 74.5 74.6 74.6 74.7 74.8 74.8 74.9 75.0 75.1 75.1 75.2 75.3 75.3 75.4 75.5 75.5 75.6 75.7 75.7 75.8 75.9 75.9 76.0 76.1 76.1 76.2 76.3 76.3 76.4 76.5 76.6 76.6 76.7 76.8 76.8 76.9 77.0 77.0 77.1 77.2 77.2 77.3 77.4 77.4 77.5 77.6 77.6 77.7 77.8 77.8 77.9 78.0 78.1 78.1 78.2 78.3 78.3 78.4 78.5 78.5 78.6 78.7 78.7 78.8 78.9 78.9 79.0 79.1 79.1 79.2 79.3 79.3 79.4 79.5 79.6 79.6 79.7 79.8 79.8 79.9 80.0 80.0 80.1 80.2 80.2 80.3 80.4 80.4 80.5 80.6 80.6 80.7 80.8 80.8 80.9 81.0 81.0 81.1 81.2 81.3 81.3 81.4 81.5 81.5 81.6 81.7 81.7 81.8 81.9 81.9 82.0 82.1 82.1 82.2 82.3 82.3 82.4 82.5 82.5 82.6 82.7 82.8 82.8 82.9 83.0 83.0 83.1 83.2 83.2 83.3 83.4 83.4 83.5 83.6 83.6 83.7 83.8 83.8 83.9 84.0 84.0 84.1 84.2 84.3 84.3 84.4 84.5 84.5 84.6 84.7 84.7 84.8 84.9 84.9 85.0 85.1 85.1 85.2 85.3 85.3 85.4 85.5 85.5 85.6 85.7 85.8 85.8 85.9 86.0 86.0 86.1 86.2 86.2 86.3 86.4 86.4 86.5 86.6 86.6 86.7 86.8 86.8 86.9 87.0 87.0 87.1 87.2 87.3 87.3 87.4 87.5 87.5 87.6 87.7 87.7 87.8 87.9 87.9 88.0 88.1 88.1 88.2 88.3 88.3 88.4 88.5 88.5 88.6 88.7 88.8 88.8 88.9 89.0 89.0 89.1 89.2 89.2 89.3 89.4 89.4 89.5 89.6 89.6 89.7 89.8 89.8 89.9 90.0 90.0 90.1 90.2 90.3 90.3 90.4 90.5 90.5 90.6 90.7 90.7 90.8 90.9 90.9 91.0 91.1 91.1 91.2 91.3 91.3 91.4 91.5 91.5 91.6 91.7 91.8 91.8 91.9 92.0 92.0 92.1 92.2 92.2 92.3 92.4 92.4 92.5 92.6 92.6 92.7 92.8 92.8 92.9 93.0 93.0 93.1 93.2 93.3 93.3 93.4 93.5 93.5 93.6 93.7 93.7 93.8 93.9 93.9 94.0 94.1 94.1 94.2 94.3 94.3 94.4 94.5 94.5 94.6 94.7 94.8 94.8 94.9 95.0 95.0 95.1 95.2 95.2 95.3 95.4 95.4 95.5 95.6 95.6 95.7 95.8 95.8 95.9 96.0 96.0 96.1 96.2 96.3 96.3 96.4 96.5 96.5 96.6 96.7 96.7 96.8 96.9 96.9 97.0 97.1 97.1 97.2 97.3 97.3 97.4 97.5 97.5 97.6 97.7 97.8 97.8 97.9 98.0 98.0 98.1 98.2 98.2 98.3 98.4 98.4 98.5 98.6 98.6 98.7 98.8 98.8 98.9 99.0 99.0 99.1 99.2 99.3 99.3 99.4 99.5 99.5 99.6 99.7 99.7 99.8 99.9 99.9 -found 60 predictions from path traversal Error with prediction: snap lend_intergenic: 8321, rend_intergenic: 4097 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 16542, rend_intergenic: 8394 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 25293, rend_intergenic: 23930 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 45637, rend_intergenic: 39268 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 51400, rend_intergenic: 47762 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 123759, rend_intergenic: 54680 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 158607, rend_intergenic: 126919 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 183081, rend_intergenic: 173092 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 192209, rend_intergenic: 187555 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 204350, rend_intergenic: 192474 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 214360, rend_intergenic: 205069 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 234203, rend_intergenic: 215026 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 246694, rend_intergenic: 237378 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 258315, rend_intergenic: 253879 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 260290, rend_intergenic: 258759 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 275663, rend_intergenic: 261227 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 280925, rend_intergenic: 275863 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 297157, rend_intergenic: 290156 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 310276, rend_intergenic: 298868 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 315929, rend_intergenic: 311470 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 318715, rend_intergenic: 316649 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 322291, rend_intergenic: 318757 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 333816, rend_intergenic: 322627 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 18 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 10139 -exon list size: 11 building trellis 7.7 15.4 23.1 30.8 38.5 46.2 53.8 61.5 69.2 76.9 84.6 92.3 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support