-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_18/scaffold_18_12383610-12570437

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_18-snap.2669-T1
Valid prediction for snap_scaffold_18-snap.2676-T1
Valid prediction for pasa_asmbl_20989.p1
Couldn't classify 56671, 58677
Sorry, prediction pasa_asmbl_20987.p1 fails validation.
(GGC)	 CA	56671-58677	GG	AGG
Valid prediction for snap_scaffold_18-snap.2680-T1
Valid prediction for GlimmerHMM_glimmerT_44280-T1
Valid prediction for GeneMark_model.76909_t
Valid prediction for snap_scaffold_18-snap.2664-T1
Valid prediction for GeneMark_model.76939_t
Valid prediction for GeneMark_model.76919_t
Valid prediction for snap_scaffold_18-snap.2692-T1
Valid prediction for Augustus_model.g29634.t1
Valid prediction for snap_scaffold_18-snap.2662-T1
Valid prediction for snap_scaffold_18-snap.2666-T1
Couldn't classify 160968, 160976
Sorry, prediction GeneMark_model.76938_t fails validation.
(AGG)	 AG	160968-160976	GT	GGG
(AGG)	 AG	160998-161006	GT	AGG
(GTC)	 AG	161029-161043	GT	AGG
(GGG)	 AG	161071-161088	GT	AGG
(GGG)	 AG	161109-161133	GT	AGG
(CTC)	 AG	161567-161589	GT	GGG
(AAA)	 AG	161611-161664	GC	GAG
(GGA)	 AG	161688-161829	GT	GAG
(GGA)	 AG	162098-162124	AG	AGA
-recovered GeneMark_model.76938_t, terminal, 162098, 162124
-recovered GeneMark_model.76938_t, internal, 160968, 160976
-recovered GeneMark_model.76938_t, internal, 160998, 161006
-recovered GeneMark_model.76938_t, internal, 161029, 161043
-recovered GeneMark_model.76938_t, internal, 161071, 161088
-recovered GeneMark_model.76938_t, internal, 161109, 161133
-recovered GeneMark_model.76938_t, internal, 161567, 161589
-recovered GeneMark_model.76938_t, internal, 161611, 161664
-recovered GeneMark_model.76938_t, internal, 161688, 161829
Valid prediction for GlimmerHMM_glimmerT_44281-T1
Valid prediction for GeneMark_model.76905_t
Valid prediction for GeneMark_model.76914_t
Valid prediction for GlimmerHMM_glimmerT_44293-T1
Valid prediction for GlimmerHMM_glimmerT_44282-T1
Valid prediction for GeneMark_model.76913_t
Valid prediction for Augustus_model.g29629.t1
Valid prediction for snap_scaffold_18-snap.2668-T1
Valid prediction for GeneMark_model.76929_t
Valid prediction for snap_scaffold_18-snap.2698-T1
Valid prediction for GlimmerHMM_glimmerT_44276-T1
Valid prediction for GeneMark_model.76901_t
Valid prediction for snap_scaffold_18-snap.2681-T1
Valid prediction for snap_scaffold_18-snap.2700-T1
Valid prediction for GeneMark_model.76907_t
Valid prediction for GeneMark_model.76933_t
Valid prediction for snap_scaffold_18-snap.2674-T1
Valid prediction for Augustus_model.g29620.t1
Valid prediction for GlimmerHMM_glimmerT_44283-T1
Valid prediction for snap_scaffold_18-snap.2689-T1
Valid prediction for GeneMark_model.76899_t
Valid prediction for Augustus_model.g29624.t1
Valid prediction for snap_scaffold_18-snap.2678-T1
Valid prediction for GeneMark_model.76935_t
Valid prediction for GeneMark_model.76936_t
Valid prediction for snap_scaffold_18-snap.2683-T1
Valid prediction for Augustus_model.g29633.t1
Valid prediction for Augustus_model.g29635.t1
Valid prediction for snap_scaffold_18-snap.2685-T1
Valid prediction for GlimmerHMM_glimmerT_44274-T1
Valid prediction for GlimmerHMM_glimmerT_44300-T1
Valid prediction for snap_scaffold_18-snap.2695-T1
Valid prediction for GeneMark_model.76944_t
Valid prediction for GlimmerHMM_glimmerT_44289-T1
Valid prediction for snap_scaffold_18-snap.2672-T1
Valid prediction for GlimmerHMM_glimmerT_44286-T1
Valid prediction for GeneMark_model.76915_t
Couldn't classify 38754, 39917
Sorry, prediction pasa_asmbl_20986.p1 fails validation.
(ATG)	 GC	38754-39917	AC	GGA
Valid prediction for GlimmerHMM_glimmerT_44299-T1
Valid prediction for snap_scaffold_18-snap.2696-T1
Valid prediction for Augustus_model.g29625.t1
Valid prediction for snap_scaffold_18-snap.2702-T1
Valid prediction for GeneMark_model.76921_t
Valid prediction for GeneMark_model.76941_t
Valid prediction for GlimmerHMM_glimmerT_44298-T1
Valid prediction for GeneMark_model.76912_t
Valid prediction for snap_scaffold_18-snap.2693-T1
Valid prediction for GeneMark_model.76925_t
Valid prediction for GeneMark_model.76910_t
Valid prediction for GeneMark_model.76927_t
Valid prediction for GlimmerHMM_glimmerT_44288-T1
Valid prediction for GlimmerHMM_glimmerT_44297-T1
Valid prediction for GeneMark_model.76892_t
Valid prediction for GeneMark_model.76931_t
Valid prediction for GeneMark_model.76894_t
Valid prediction for GlimmerHMM_glimmerT_44295-T1
Valid prediction for GeneMark_model.76923_t
Valid prediction for Augustus_model.g29623.t1
Valid prediction for snap_scaffold_18-snap.2703-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.76928_t
Couldn't classify 70244, 70372
Sorry, prediction pasa_asmbl_20179.p1 fails validation.
(ATG)	 CA	67475-67482	GT	TGG
(GGA)	 AG	67897-67979	GT	CTG
(TTC)	 AG	68203-68295	GT	ACG
(TCA)	 AG	68765-68877	GT	TGG
(AAC)	 AG	69124-69253	GT	TGG
(CCT)	 AG	69784-69887	GT	AGG
(GTG)	 AG	70244-70372	TG	GGT
-recovered pasa_asmbl_20179.p1, initial, 67475, 67482
-recovered pasa_asmbl_20179.p1, internal, 67897, 67979
-recovered pasa_asmbl_20179.p1, internal, 68203, 68295
-recovered pasa_asmbl_20179.p1, internal, 68765, 68877
-recovered pasa_asmbl_20179.p1, internal, 69124, 69253
-recovered pasa_asmbl_20179.p1, internal, 69784, 69887
Valid prediction for GeneMark_model.76900_t
Valid prediction for snap_scaffold_18-snap.2679-T1
Valid prediction for snap_scaffold_18-snap.2697-T1
Valid prediction for GeneMark_model.76908_t
Valid prediction for HiQ_model.g29621.t1
Valid prediction for GlimmerHMM_glimmerT_44291-T1
Valid prediction for snap_scaffold_18-snap.2667-T1
Valid prediction for GlimmerHMM_glimmerT_44285-T1
Valid prediction for GeneMark_model.76911_t
Valid prediction for snap_scaffold_18-snap.2675-T1
Valid prediction for GeneMark_model.76895_t
Valid prediction for GeneMark_model.76902_t
Valid prediction for snap_scaffold_18-snap.2686-T1
Valid prediction for GeneMark_model.76903_t
Valid prediction for GeneMark_model.76916_t
Valid prediction for GeneMark_model.76943_t
Valid prediction for snap_scaffold_18-snap.2691-T1
Valid prediction for GeneMark_model.76920_t
Valid prediction for GeneMark_model.76942_t
Valid prediction for GeneMark_model.76906_t
Valid prediction for CodingQuarry_transcript_23862-T1
Valid prediction for snap_scaffold_18-snap.2694-T1
Valid prediction for pasa_asmbl_20177.p1
Valid prediction for snap_scaffold_18-snap.2682-T1
Valid prediction for snap_scaffold_18-snap.2688-T1
Valid prediction for HiQ_model.g29632.t1
Valid prediction for snap_scaffold_18-snap.2687-T1
Valid prediction for GlimmerHMM_glimmerT_44292-T1
Valid prediction for snap_scaffold_18-snap.2701-T1
Valid prediction for GeneMark_model.76924_t
Valid prediction for GeneMark_model.76898_t
Couldn't classify 71559, 71630
Sorry, prediction pasa_asmbl_20178.p1 fails validation.
(ACC)	 AG	71559-71630	GT	AGG
(CTG)	 AG	71758-71846	GT	TGG
(GGA)	 AG	72050-72125	GT	TGG
(GAT)	 AG	72540-72653	GT	AGG
(GCC)	 AG	72769-72859	GT	TGG
(GTG)	 AG	74758-74837	GT	AGG
(GAA)	 AG	76321-76380	GT	GGG
(CTG)	 AG	76464-76609	GT	AAG
(CTG)	 AG	76773-76821	GT	AGG
(AGG)	 AG	77238-77307	GT	TGG
(GCC)	 AG	77432-77547	GT	AGG
(GAG)	 AG	78029-78218	GT	TGG
(GTC)	 AG	78608-78720	GT	CGG
(GAG)	 AG	79161-79263	GT	GGG
(CTT)	 AG	79493-79653	GT	TGG
(GAG)	 AG	79849-79974	GT	AGG
(ATG)	 AG	80159-80272	GT	AGG
(GAC)	 AG	80757-80924	GT	AGG
(GTG)	 AG	81173-81280	AG	GAA
-recovered pasa_asmbl_20178.p1, initial, 80159, 80272
-recovered pasa_asmbl_20178.p1, terminal, 81173, 81280
-recovered pasa_asmbl_20178.p1, internal, 71559, 71630
-recovered pasa_asmbl_20178.p1, internal, 71758, 71846
-recovered pasa_asmbl_20178.p1, internal, 72050, 72125
-recovered pasa_asmbl_20178.p1, internal, 72540, 72653
-recovered pasa_asmbl_20178.p1, internal, 72769, 72859
-recovered pasa_asmbl_20178.p1, internal, 74758, 74837
-recovered pasa_asmbl_20178.p1, internal, 76321, 76380
-recovered pasa_asmbl_20178.p1, internal, 76464, 76609
-recovered pasa_asmbl_20178.p1, internal, 76773, 76821
-recovered pasa_asmbl_20178.p1, internal, 77238, 77307
-recovered pasa_asmbl_20178.p1, internal, 77432, 77547
-recovered pasa_asmbl_20178.p1, internal, 78029, 78218
-recovered pasa_asmbl_20178.p1, internal, 78608, 78720
-recovered pasa_asmbl_20178.p1, internal, 79161, 79263
-recovered pasa_asmbl_20178.p1, internal, 79493, 79653
-recovered pasa_asmbl_20178.p1, internal, 79849, 79974
-recovered pasa_asmbl_20178.p1, internal, 80159, 80272
-recovered pasa_asmbl_20178.p1, internal, 80757, 80924
Valid prediction for GlimmerHMM_glimmerT_44278-T1
Valid prediction for HiQ_model.g29626.t1
Couldn't classify 31405, 31623
Sorry, prediction GeneMark_model.76937_t fails validation.
(ACG)	 AG	31405-31623	GT	ATG
(GGA)	 AG	32006-32026	GT	GAG
(AGG)	 AG	32054-32093	AA	AAA
-recovered GeneMark_model.76937_t, terminal, 32054, 32093
-recovered GeneMark_model.76937_t, internal, 31405, 31623
-recovered GeneMark_model.76937_t, internal, 32006, 32026
Valid prediction for GeneMark_model.76934_t
Valid prediction for snap_scaffold_18-snap.2704-T1
Valid prediction for Augustus_model.g29627.t1
Valid prediction for GlimmerHMM_glimmerT_44290-T1
Valid prediction for Augustus_model.g29628.t1
Valid prediction for pasa_asmbl_20171.p1
Valid prediction for GeneMark_model.76940_t
Valid prediction for GeneMark_model.76893_t
Valid prediction for GlimmerHMM_glimmerT_44284-T1
Valid prediction for snap_scaffold_18-snap.2684-T1
Valid prediction for snap_scaffold_18-snap.2670-T1
Valid prediction for pasa_asmbl_20182.p1
Valid prediction for snap_scaffold_18-snap.2663-T1
Valid prediction for snap_scaffold_18-snap.2671-T1
Valid prediction for snap_scaffold_18-snap.2699-T1
Valid prediction for GlimmerHMM_glimmerT_44287-T1
Valid prediction for GlimmerHMM_glimmerT_44279-T1
Valid prediction for HiQ_model.g29631.t1
Valid prediction for GlimmerHMM_glimmerT_44277-T1
Valid prediction for HiQ_model.g29630.t1
Valid prediction for snap_scaffold_18-snap.2677-T1
Valid prediction for GeneMark_model.76904_t
Valid prediction for GeneMark_model.76922_t
Valid prediction for snap_scaffold_18-snap.2665-T1
Valid prediction for snap_scaffold_18-snap.2673-T1
Valid prediction for GlimmerHMM_glimmerT_44275-T1
Valid prediction for GeneMark_model.76932_t
Valid prediction for GlimmerHMM_glimmerT_44296-T1
Valid prediction for snap_scaffold_18-snap.2690-T1
Valid prediction for Augustus_model.g29622.t1
Valid prediction for GeneMark_model.76896_t
Valid prediction for GeneMark_model.76918_t
Valid prediction for GlimmerHMM_glimmerT_44294-T1
Valid prediction for GeneMark_model.76930_t
Valid prediction for GeneMark_model.76917_t
Couldn't classify 119485, 119586
Sorry, prediction pasa_asmbl_20175.p1 fails validation.
(GAT)	 AG	119485-119586	GT	CGG
(CTT)	 AG	119941-120015	GT	AGG
(CGG)	 AG	120300-120506	GT	AGG
(GCG)	 AG	120858-120945	GT	AGG
(GAA)	 AG	121374-121573	GT	TGG
(GAC)	 AG	121931-122021	GT	CGG
(TGG)	 AG	122529-122624	GT	AGG
(TCA)	 AG	123538-123681	GT	AGG
(TGA)	 AG	123898-124042	GT	AGG
(CGA)	 AG	124636-124779	GT	CGG
(CTC)	 AG	124904-124987	GT	TCG
(TTA)	 AG	125506-125527	AG	AGA
-recovered pasa_asmbl_20175.p1, terminal, 125506, 125527
-recovered pasa_asmbl_20175.p1, internal, 119485, 119586
-recovered pasa_asmbl_20175.p1, internal, 119941, 120015
-recovered pasa_asmbl_20175.p1, internal, 120300, 120506
-recovered pasa_asmbl_20175.p1, internal, 120858, 120945
-recovered pasa_asmbl_20175.p1, internal, 121374, 121573
-recovered pasa_asmbl_20175.p1, internal, 121931, 122021
-recovered pasa_asmbl_20175.p1, internal, 122529, 122624
-recovered pasa_asmbl_20175.p1, internal, 123538, 123681
-recovered pasa_asmbl_20175.p1, internal, 123898, 124042
-recovered pasa_asmbl_20175.p1, internal, 124636, 124779
-recovered pasa_asmbl_20175.p1, internal, 124904, 124987

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8691, rend_intergenic: 4984  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12233, rend_intergenic: 10157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18497, rend_intergenic: 17120  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39649, rend_intergenic: 38754  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42054, rend_intergenic: 41610  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46178, rend_intergenic: 42979  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54648, rend_intergenic: 49008  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69168, rend_intergenic: 60654  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74536, rend_intergenic: 70309  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83583, rend_intergenic: 80102  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91736, rend_intergenic: 88218  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103541, rend_intergenic: 92064  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115926, rend_intergenic: 105936  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118518, rend_intergenic: 116157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123053, rend_intergenic: 120419  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132869, rend_intergenic: 124973  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152877, rend_intergenic: 132936  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163383, rend_intergenic: 154413  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166419, rend_intergenic: 164032  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172347, rend_intergenic: 166482  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174956, rend_intergenic: 172594  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182921, rend_intergenic: 180914  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 186828
-exon list size: 817


building trellis

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37.7    
37.9    
38.0    
38.1    
38.2    
38.3    
38.5    
38.6    
38.7    
38.8    
38.9    
39.1    
39.2    
39.3    
39.4    
39.6    
39.7    
39.8    
39.9    
40.0    
40.2    
40.3    
40.4    
40.5    
40.7    
40.8    
40.9    
41.0    
41.1    
41.3    
41.4    
41.5    
41.6    
41.8    
41.9    
42.0    
42.1    
42.2    
42.4    
42.5    
42.6    
42.7    
42.9    
43.0    
43.1    
43.2    
43.3    
43.5    
43.6    
43.7    
43.8    
44.0    
44.1    
44.2    
44.3    
44.4    
44.6    
44.7    
44.8    
44.9    
45.1    
45.2    
45.3    
45.4    
45.5    
45.7    
45.8    
45.9    
46.0    
46.2    
46.3    
46.4    
46.5    
46.6    
46.8    
46.9    
47.0    
47.1    
47.3    
47.4    
47.5    
47.6    
47.7    
47.9    
48.0    
48.1    
48.2    
48.4    
48.5    
48.6    
48.7    
48.8    
49.0    
49.1    
49.2    
49.3    
49.5    
49.6    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.4    
50.5    
50.7    
50.8    
50.9    
51.0    
51.2    
51.3    
51.4    
51.5    
51.6    
51.8    
51.9    
52.0    
52.1    
52.3    
52.4    
52.5    
52.6    
52.7    
52.9    
53.0    
53.1    
53.2    
53.4    
53.5    
53.6    
53.7    
53.8    
54.0    
54.1    
54.2    
54.3    
54.5    
54.6    
54.7    
54.8    
54.9    
55.1    
55.2    
55.3    
55.4    
55.6    
55.7    
55.8    
55.9    
56.0    
56.2    
56.3    
56.4    
56.5    
56.7    
56.8    
56.9    
57.0    
57.1    
57.3    
57.4    
57.5    
57.6    
57.8    
57.9    
58.0    
58.1    
58.2    
58.4    
58.5    
58.6    
58.7    
58.9    
59.0    
59.1    
59.2    
59.3    
59.5    
59.6    
59.7    
59.8    
60.0    
60.1    
60.2    
60.3    
60.4    
60.6    
60.7    
60.8    
60.9    
61.1    
61.2    
61.3    
61.4    
61.5    
61.7    
61.8    
61.9    
62.0    
62.1    
62.3    
62.4    
62.5    
62.6    
62.8    
62.9    
63.0    
63.1    
63.2    
63.4    
63.5    
63.6    
63.7    
63.9    
64.0    
64.1    
64.2    
64.3    
64.5    
64.6    
64.7    
64.8    
65.0    
65.1    
65.2    
65.3    
65.4    
65.6    
65.7    
65.8    
65.9    
66.1    
66.2    
66.3    
66.4    
66.5    
66.7    
66.8    
66.9    
67.0    
67.2    
67.3    
67.4    
67.5    
67.6    
67.8    
67.9    
68.0    
68.1    
68.3    
68.4    
68.5    
68.6    
68.7    
68.9    
69.0    
69.1    
69.2    
69.4    
69.5    
69.6    
69.7    
69.8    
70.0    
70.1    
70.2    
70.3    
70.5    
70.6    
70.7    
70.8    
70.9    
71.1    
71.2    
71.3    
71.4    
71.6    
71.7    
71.8    
71.9    
72.0    
72.2    
72.3    
72.4    
72.5    
72.6    
72.8    
72.9    
73.0    
73.1    
73.3    
73.4    
73.5    
73.6    
73.7    
73.9    
74.0    
74.1    
74.2    
74.4    
74.5    
74.6    
74.7    
74.8    
75.0    
75.1    
75.2    
75.3    
75.5    
75.6    
75.7    
75.8    
75.9    
76.1    
76.2    
76.3    
76.4    
76.6    
76.7    
76.8    
76.9    
77.0    
77.2    
77.3    
77.4    
77.5    
77.7    
77.8    
77.9    
78.0    
78.1    
78.3    
78.4    
78.5    
78.6    
78.8    
78.9    
79.0    
79.1    
79.2    
79.4    
79.5    
79.6    
79.7    
79.9    
80.0    
80.1    
80.2    
80.3    
80.5    
80.6    
80.7    
80.8    
81.0    
81.1    
81.2    
81.3    
81.4    
81.6    
81.7    
81.8    
81.9    
82.1    
82.2    
82.3    
82.4    
82.5    
82.7    
82.8    
82.9    
83.0    
83.2    
83.3    
83.4    
83.5    
83.6    
83.8    
83.9    
84.0    
84.1    
84.2    
84.4    
84.5    
84.6    
84.7    
84.9    
85.0    
85.1    
85.2    
85.3    
85.5    
85.6    
85.7    
85.8    
86.0    
86.1    
86.2    
86.3    
86.4    
86.6    
86.7    
86.8    
86.9    
87.1    
87.2    
87.3    
87.4    
87.5    
87.7    
87.8    
87.9    
88.0    
88.2    
88.3    
88.4    
88.5    
88.6    
88.8    
88.9    
89.0    
89.1    
89.3    
89.4    
89.5    
89.6    
89.7    
89.9    
90.0    
90.1    
90.2    
90.4    
90.5    
90.6    
90.7    
90.8    
91.0    
91.1    
91.2    
91.3    
91.5    
91.6    
91.7    
91.8    
91.9    
92.1    
92.2    
92.3    
92.4    
92.6    
92.7    
92.8    
92.9    
93.0    
93.2    
93.3    
93.4    
93.5    
93.7    
93.8    
93.9    
94.0    
94.1    
94.3    
94.4    
94.5    
94.6    
94.7    
94.9    
95.0    
95.1    
95.2    
95.4    
95.5    
95.6    
95.7    
95.8    
96.0    
96.1    
96.2    
96.3    
96.5    
96.6    
96.7    
96.8    
96.9    
97.1    
97.2    
97.3    
97.4    
97.6    
97.7    
97.8    
97.9    
98.0    
98.2    
98.3    
98.4    
98.5    
98.7    
98.8    
98.9    
99.0    
99.1    
99.3    
99.4    
99.5    
99.6    
99.8    
99.9    
-found 36 predictions from path traversal
Error with prediction: snap lend_intergenic: 8691, rend_intergenic: 4984  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12233, rend_intergenic: 10157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18497, rend_intergenic: 17120  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39649, rend_intergenic: 38754  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42054, rend_intergenic: 41610  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46178, rend_intergenic: 42979  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54648, rend_intergenic: 49008  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69168, rend_intergenic: 60654  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74536, rend_intergenic: 70309  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83583, rend_intergenic: 80102  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91736, rend_intergenic: 88218  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103541, rend_intergenic: 92064  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115926, rend_intergenic: 105936  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118518, rend_intergenic: 116157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123053, rend_intergenic: 120419  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132869, rend_intergenic: 124973  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152877, rend_intergenic: 132936  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163383, rend_intergenic: 154413  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166419, rend_intergenic: 164032  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172347, rend_intergenic: 166482  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174956, rend_intergenic: 172594  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182921, rend_intergenic: 180914  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 20 predictions persist after filtering for low support