-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_18/scaffold_18_12102502-12386871

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_18-snap.2653-T1
Valid prediction for snap_scaffold_18-snap.2617-T1
Valid prediction for GeneMark_model.76844_t
Valid prediction for Augustus_model.g29608.t1
Valid prediction for snap_scaffold_18-snap.2605-T1
Valid prediction for GlimmerHMM_glimmerT_44252-T1
Valid prediction for snap_scaffold_18-snap.2641-T1
Valid prediction for GlimmerHMM_glimmerT_44238-T1
Valid prediction for GeneMark_model.76821_t
Valid prediction for GeneMark_model.76887_t
Valid prediction for GeneMark_model.76856_t
Valid prediction for snap_scaffold_18-snap.2615-T1
Valid prediction for snap_scaffold_18-snap.2604-T1
Valid prediction for GeneMark_model.76882_t
Valid prediction for snap_scaffold_18-snap.2637-T1
Valid prediction for snap_scaffold_18-snap.2629-T1
Valid prediction for GeneMark_model.76804_t
Valid prediction for GeneMark_model.76812_t
Valid prediction for GlimmerHMM_glimmerT_44249-T1
Valid prediction for snap_scaffold_18-snap.2658-T1
Valid prediction for GeneMark_model.76803_t
Valid prediction for Augustus_model.g29616.t1
Valid prediction for GlimmerHMM_glimmerT_44246-T1
Valid prediction for snap_scaffold_18-snap.2620-T1
Valid prediction for GeneMark_model.76871_t
Valid prediction for CodingQuarry_transcript_23860-T1
Valid prediction for GeneMark_model.76806_t
Valid prediction for snap_scaffold_18-snap.2612-T1
Valid prediction for GeneMark_model.76825_t
Valid prediction for GeneMark_model.76864_t
Couldn't classify 179220, 179277
Sorry, prediction GeneMark_model.76859_t fails validation.
(ATG)	 TT	178372-178421	GT	GGG
(GGA)	 AG	178539-178679	GT	GAG
(GAG)	 AG	178750-178782	GT	AGG
(GGA)	 AG	178808-179197	GC	AGG
(GGG)	 AG	179220-179277	GC	AAG
-recovered GeneMark_model.76859_t, initial, 178372, 178421
-recovered GeneMark_model.76859_t, internal, 178539, 178679
-recovered GeneMark_model.76859_t, internal, 178750, 178782
-recovered GeneMark_model.76859_t, internal, 178808, 179197
-recovered GeneMark_model.76859_t, internal, 179220, 179277
Valid prediction for snap_scaffold_18-snap.2660-T1
Valid prediction for GlimmerHMM_glimmerT_44273-T1
Valid prediction for GlimmerHMM_glimmerT_44257-T1
Valid prediction for GeneMark_model.76889_t
Valid prediction for snap_scaffold_18-snap.2626-T1
Valid prediction for GeneMark_model.76819_t
Valid prediction for GeneMark_model.76798_t
Valid prediction for GeneMark_model.76852_t
Valid prediction for snap_scaffold_18-snap.2635-T1
Valid prediction for GeneMark_model.76884_t
Valid prediction for GeneMark_model.76862_t
Valid prediction for snap_scaffold_18-snap.2651-T1
Valid prediction for GlimmerHMM_glimmerT_44265-T1
Valid prediction for snap_scaffold_18-snap.2602-T1
Valid prediction for Augustus_model.g29618.t1
Valid prediction for snap_scaffold_18-snap.2614-T1
Valid prediction for snap_scaffold_18-snap.2642-T1
Valid prediction for GeneMark_model.76849_t
Valid prediction for snap_scaffold_18-snap.2618-T1
Valid prediction for snap_scaffold_18-snap.2624-T1
Valid prediction for GeneMark_model.76874_t
Valid prediction for GlimmerHMM_glimmerT_44267-T1
Valid prediction for snap_scaffold_18-snap.2659-T1
Valid prediction for snap_scaffold_18-snap.2621-T1
Valid prediction for snap_scaffold_18-snap.2657-T1
Valid prediction for GeneMark_model.76839_t
Valid prediction for GeneMark_model.76815_t
Valid prediction for GeneMark_model.76843_t
Valid prediction for pasa_asmbl_20984.p1
Valid prediction for GlimmerHMM_glimmerT_44251-T1
Valid prediction for snap_scaffold_18-snap.2656-T1
Valid prediction for GeneMark_model.76832_t
Valid prediction for GeneMark_model.76836_t
Couldn't classify 195836, 195912
Sorry, prediction pasa_asmbl_21147.p1 fails validation.
(TTT)	 GG	195836-195912	GT	AAG
(TTA)	 AG	196113-196288	GT	AGG
(AGG)	 AG	196883-196984	GT	AGG
(GAG)	 AG	197635-197783	GT	AGG
(GTT)	 AG	198091-198156	CG	AGC
-recovered pasa_asmbl_21147.p1, terminal, 198091, 198156
-recovered pasa_asmbl_21147.p1, internal, 196113, 196288
-recovered pasa_asmbl_21147.p1, internal, 196883, 196984
-recovered pasa_asmbl_21147.p1, internal, 197635, 197783
Valid prediction for HiQ_model.g29614.t1
Valid prediction for GeneMark_model.76868_t
Valid prediction for GeneMark_model.76855_t
Valid prediction for snap_scaffold_18-snap.2622-T1
Valid prediction for GlimmerHMM_glimmerT_44261-T1
Valid prediction for GeneMark_model.76846_t
Valid prediction for GeneMark_model.76828_t
Valid prediction for GlimmerHMM_glimmerT_44268-T1
Valid prediction for snap_scaffold_18-snap.2600-T1
Valid prediction for GeneMark_model.76834_t
Valid prediction for snap_scaffold_18-snap.2647-T1
Valid prediction for snap_scaffold_18-snap.2638-T1
Valid prediction for Augustus_model.g29612.t1
Valid prediction for snap_scaffold_18-snap.2633-T1
Valid prediction for GeneMark_model.76885_t
Valid prediction for GeneMark_model.76877_t
Valid prediction for GlimmerHMM_glimmerT_44248-T1
Valid prediction for GeneMark_model.76853_t
Valid prediction for snap_scaffold_18-snap.2609-T1
Valid prediction for GlimmerHMM_glimmerT_44269-T1
Valid prediction for GeneMark_model.76880_t
Valid prediction for GeneMark_model.76808_t
Valid prediction for snap_scaffold_18-snap.2654-T1
Valid prediction for GeneMark_model.76831_t
Valid prediction for snap_scaffold_18-snap.2610-T1
Valid prediction for GlimmerHMM_glimmerT_44263-T1
Valid prediction for snap_scaffold_18-snap.2650-T1
Valid prediction for GeneMark_model.76869_t
Valid prediction for GeneMark_model.76875_t
Valid prediction for GeneMark_model.76826_t
Valid prediction for GeneMark_model.76823_t
Valid prediction for GeneMark_model.76817_t
Valid prediction for GeneMark_model.76857_t
Valid prediction for GeneMark_model.76866_t
Valid prediction for GlimmerHMM_glimmerT_44266-T1
Valid prediction for GeneMark_model.76801_t
Valid prediction for snap_scaffold_18-snap.2634-T1
Valid prediction for Augustus_model.g29617.t1
Valid prediction for snap_scaffold_18-snap.2646-T1
Valid prediction for GeneMark_model.76850_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.76814_t
Valid prediction for GeneMark_model.76837_t
Valid prediction for GlimmerHMM_glimmerT_44254-T1
Valid prediction for GlimmerHMM_glimmerT_44240-T1
Valid prediction for GeneMark_model.76848_t
Valid prediction for GeneMark_model.76879_t
Valid prediction for Augustus_model.g29619.t1
Valid prediction for snap_scaffold_18-snap.2640-T1
Valid prediction for snap_scaffold_18-snap.2613-T1
Valid prediction for GlimmerHMM_glimmerT_44253-T1
Valid prediction for GlimmerHMM_glimmerT_44250-T1
Valid prediction for GeneMark_model.76818_t
Valid prediction for snap_scaffold_18-snap.2639-T1
Valid prediction for Augustus_model.g29611.t1
Valid prediction for GlimmerHMM_glimmerT_44271-T1
Valid prediction for GlimmerHMM_glimmerT_44260-T1
Valid prediction for GeneMark_model.76854_t
Valid prediction for snap_scaffold_18-snap.2625-T1
Valid prediction for GeneMark_model.76807_t
Valid prediction for GlimmerHMM_glimmerT_44272-T1
Valid prediction for GeneMark_model.76813_t
Valid prediction for GeneMark_model.76820_t
Valid prediction for GeneMark_model.76878_t
Valid prediction for GlimmerHMM_glimmerT_44243-T1
Valid prediction for GeneMark_model.76860_t
Valid prediction for GeneMark_model.76810_t
Valid prediction for Augustus_model.g29606.t1
Valid prediction for GeneMark_model.76811_t
Valid prediction for GlimmerHMM_glimmerT_44234-T1
Valid prediction for GeneMark_model.76822_t
Valid prediction for GlimmerHMM_glimmerT_44242-T1
Valid prediction for GeneMark_model.76861_t
Valid prediction for GlimmerHMM_glimmerT_44264-T1
Valid prediction for Augustus_model.g29610.t1
Valid prediction for Augustus_model.g29609.t1
Valid prediction for GeneMark_model.76876_t
Valid prediction for GeneMark_model.76799_t
Valid prediction for GeneMark_model.76873_t
Valid prediction for snap_scaffold_18-snap.2645-T1
Valid prediction for GlimmerHMM_glimmerT_44241-T1
Valid prediction for snap_scaffold_18-snap.2616-T1
Valid prediction for GlimmerHMM_glimmerT_44255-T1
Valid prediction for snap_scaffold_18-snap.2644-T1
Valid prediction for GlimmerHMM_glimmerT_44239-T1
Valid prediction for snap_scaffold_18-snap.2619-T1
Valid prediction for GlimmerHMM_glimmerT_44270-T1
Valid prediction for GlimmerHMM_glimmerT_44262-T1
Valid prediction for GlimmerHMM_glimmerT_44236-T1
Valid prediction for GlimmerHMM_glimmerT_44259-T1
Valid prediction for GlimmerHMM_glimmerT_44256-T1
Valid prediction for snap_scaffold_18-snap.2623-T1
Couldn't classify 258714, 258827
Couldn't classify 260616, 260828
Sorry, prediction pasa_asmbl_20231.p1 fails validation.
(AAA)	 AG	258714-258827	GT	ACG
(GAT)	 AG	260616-260828	AG	GGA
-recovered pasa_asmbl_20231.p1, internal, 258714, 258827
Valid prediction for GlimmerHMM_glimmerT_44237-T1
Valid prediction for snap_scaffold_18-snap.2628-T1
Valid prediction for Augustus_model.g29607.t1
Valid prediction for snap_scaffold_18-snap.2632-T1
Valid prediction for GeneMark_model.76796_t
Valid prediction for GeneMark_model.76870_t
Valid prediction for GeneMark_model.76830_t
Valid prediction for snap_scaffold_18-snap.2607-T1
Valid prediction for snap_scaffold_18-snap.2648-T1
Valid prediction for Augustus_model.g29615.t1
Valid prediction for Augustus_model.g29613.t1
Valid prediction for GeneMark_model.76858_t
Valid prediction for GeneMark_model.76847_t
Valid prediction for snap_scaffold_18-snap.2627-T1
Valid prediction for GeneMark_model.76833_t
Valid prediction for snap_scaffold_18-snap.2608-T1
Valid prediction for snap_scaffold_18-snap.2603-T1
Valid prediction for GeneMark_model.76886_t
Valid prediction for GeneMark_model.76824_t
Valid prediction for GeneMark_model.76805_t
Valid prediction for snap_scaffold_18-snap.2631-T1
Valid prediction for GeneMark_model.76872_t
Valid prediction for snap_scaffold_18-snap.2630-T1
Valid prediction for GeneMark_model.76838_t
Valid prediction for snap_scaffold_18-snap.2652-T1
Valid prediction for GeneMark_model.76863_t
Valid prediction for GlimmerHMM_glimmerT_44258-T1
Valid prediction for GeneMark_model.76890_t
Valid prediction for GeneMark_model.76888_t
Valid prediction for GeneMark_model.76842_t
Valid prediction for snap_scaffold_18-snap.2606-T1
Valid prediction for GeneMark_model.76809_t
Valid prediction for snap_scaffold_18-snap.2655-T1
Valid prediction for GeneMark_model.76816_t
Valid prediction for GeneMark_model.76883_t
Valid prediction for GeneMark_model.76797_t
Valid prediction for snap_scaffold_18-snap.2611-T1
Valid prediction for GeneMark_model.76827_t
Valid prediction for GeneMark_model.76802_t
Valid prediction for snap_scaffold_18-snap.2601-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_44235-T1
Valid prediction for GeneMark_model.76840_t
Valid prediction for GeneMark_model.76867_t
Valid prediction for GeneMark_model.76845_t
Valid prediction for snap_scaffold_18-snap.2661-T1
Valid prediction for GlimmerHMM_glimmerT_44247-T1
Valid prediction for snap_scaffold_18-snap.2649-T1
Valid prediction for CodingQuarry_transcript_23861-T1
Valid prediction for snap_scaffold_18-snap.2643-T1
Couldn't classify 82006, 82031
Sorry, prediction pasa_asmbl_20169.p1 fails validation.
(GGA)	 AG	82006-82031	GT	TGG
(GTT)	 AG	82279-82375	GT	AGG
(GAC)	 AG	83500-83616	GT	TGG
(GTT)	 AG	83799-83870	AG	GAA
-recovered pasa_asmbl_20169.p1, terminal, 83799, 83870
-recovered pasa_asmbl_20169.p1, internal, 82006, 82031
-recovered pasa_asmbl_20169.p1, internal, 82279, 82375
-recovered pasa_asmbl_20169.p1, internal, 83500, 83616
Valid prediction for GeneMark_model.76835_t
Valid prediction for GeneMark_model.76829_t
Valid prediction for snap_scaffold_18-snap.2636-T1
Valid prediction for GeneMark_model.76881_t
Valid prediction for GeneMark_model.76865_t
Valid prediction for GlimmerHMM_glimmerT_44245-T1
Valid prediction for GlimmerHMM_glimmerT_44244-T1
Valid prediction for GeneMark_model.76851_t
Valid prediction for GeneMark_model.76800_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 104192, rend_intergenic: 104189  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 7121, rend_intergenic: 4048  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12192, rend_intergenic: 7359  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14762, rend_intergenic: 13067  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28415, rend_intergenic: 14913  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48127, rend_intergenic: 42119  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63913, rend_intergenic: 56550  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73487, rend_intergenic: 68945  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88377, rend_intergenic: 79219  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90082, rend_intergenic: 88735  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98200, rend_intergenic: 90389  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102439, rend_intergenic: 101943  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107069, rend_intergenic: 102715  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109876, rend_intergenic: 107144  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115661, rend_intergenic: 109919  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121680, rend_intergenic: 116217  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141758, rend_intergenic: 131533  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146401, rend_intergenic: 144938  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156455, rend_intergenic: 153572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171654, rend_intergenic: 166054  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177522, rend_intergenic: 171656  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204038, rend_intergenic: 189098  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 210862, rend_intergenic: 205639  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 226419, rend_intergenic: 212450  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 227798, rend_intergenic: 226510  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 239203, rend_intergenic: 227805  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 250349, rend_intergenic: 240449  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 274260, rend_intergenic: 250413  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 281007, rend_intergenic: 277393  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 284370
-exon list size: 1225


building trellis

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27.9    
28.0    
28.0    
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28.2    
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28.4    
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28.9    
28.9    
29.0    
29.1    
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29.3    
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29.5    
29.6    
29.7    
29.7    
29.8    
29.9    
30.0    
30.1    
30.2    
30.2    
30.3    
30.4    
30.5    
30.6    
30.6    
30.7    
30.8    
30.9    
31.0    
31.1    
31.1    
31.2    
31.3    
31.4    
31.5    
31.5    
31.6    
31.7    
31.8    
31.9    
31.9    
32.0    
32.1    
32.2    
32.3    
32.4    
32.4    
32.5    
32.6    
32.7    
32.8    
32.8    
32.9    
33.0    
33.1    
33.2    
33.3    
33.3    
33.4    
33.5    
33.6    
33.7    
33.7    
33.8    
33.9    
34.0    
34.1    
34.1    
34.2    
34.3    
34.4    
34.5    
34.6    
34.6    
34.7    
34.8    
34.9    
35.0    
35.0    
35.1    
35.2    
35.3    
35.4    
35.5    
35.5    
35.6    
35.7    
35.8    
35.9    
35.9    
36.0    
36.1    
36.2    
36.3    
36.3    
36.4    
36.5    
36.6    
36.7    
36.8    
36.8    
36.9    
37.0    
37.1    
37.2    
37.2    
37.3    
37.4    
37.5    
37.6    
37.7    
37.7    
37.8    
37.9    
38.0    
38.1    
38.1    
38.2    
38.3    
38.4    
38.5    
38.5    
38.6    
38.7    
38.8    
38.9    
39.0    
39.0    
39.1    
39.2    
39.3    
39.4    
39.4    
39.5    
39.6    
39.7    
39.8    
39.9    
39.9    
40.0    
40.1    
40.2    
40.3    
40.3    
40.4    
40.5    
40.6    
40.7    
40.7    
40.8    
40.9    
41.0    
41.1    
41.2    
41.2    
41.3    
41.4    
41.5    
41.6    
41.6    
41.7    
41.8    
41.9    
42.0    
42.1    
42.1    
42.2    
42.3    
42.4    
42.5    
42.5    
42.6    
42.7    
42.8    
42.9    
43.0    
43.0    
43.1    
43.2    
43.3    
43.4    
43.4    
43.5    
43.6    
43.7    
43.8    
43.8    
43.9    
44.0    
44.1    
44.2    
44.3    
44.3    
44.4    
44.5    
44.6    
44.7    
44.7    
44.8    
44.9    
45.0    
45.1    
45.2    
45.2    
45.3    
45.4    
45.5    
45.6    
45.6    
45.7    
45.8    
45.9    
46.0    
46.0    
46.1    
46.2    
46.3    
46.4    
46.5    
46.5    
46.6    
46.7    
46.8    
46.9    
46.9    
47.0    
47.1    
47.2    
47.3    
47.4    
47.4    
47.5    
47.6    
47.7    
47.8    
47.8    
47.9    
48.0    
48.1    
48.2    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.7    
48.8    
48.9    
49.0    
49.1    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.6    
49.7    
49.8    
49.9    
50.0    
50.0    
50.1    
50.2    
50.3    
50.4    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
50.9    
51.0    
51.1    
51.2    
51.3    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
51.8    
51.9    
52.0    
52.1    
52.2    
52.2    
52.3    
52.4    
52.5    
52.6    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.1    
53.2    
53.3    
53.4    
53.5    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.0    
54.1    
54.2    
54.3    
54.4    
54.4    
54.5    
54.6    
54.7    
54.8    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.3    
55.4    
55.5    
55.6    
55.7    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.2    
56.3    
56.4    
56.5    
56.6    
56.6    
56.7    
56.8    
56.9    
57.0    
57.0    
57.1    
57.2    
57.3    
57.4    
57.5    
57.5    
57.6    
57.7    
57.8    
57.9    
57.9    
58.0    
58.1    
58.2    
58.3    
58.4    
58.4    
58.5    
58.6    
58.7    
58.8    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.3    
59.4    
59.5    
59.6    
59.7    
59.7    
59.8    
59.9    
60.0    
60.1    
60.1    
60.2    
60.3    
60.4    
60.5    
60.6    
60.6    
60.7    
60.8    
60.9    
61.0    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.5    
61.6    
61.7    
61.8    
61.9    
61.9    
62.0    
62.1    
62.2    
62.3    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
62.8    
62.9    
63.0    
63.1    
63.2    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.7    
63.8    
63.9    
64.0    
64.1    
64.1    
64.2    
64.3    
64.4    
64.5    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.0    
65.1    
65.2    
65.3    
65.4    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
65.9    
66.0    
66.1    
66.2    
66.3    
66.3    
66.4    
66.5    
66.6    
66.7    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.2    
67.3    
67.4    
67.5    
67.6    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.1    
68.2    
68.3    
68.4    
68.5    
68.5    
68.6    
68.7    
68.8    
68.9    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.4    
69.5    
69.6    
69.7    
69.8    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.3    
70.4    
70.5    
70.6    
70.7    
70.7    
70.8    
70.9    
71.0    
71.1    
71.1    
71.2    
71.3    
71.4    
71.5    
71.6    
71.6    
71.7    
71.8    
71.9    
72.0    
72.0    
72.1    
72.2    
72.3    
72.4    
72.5    
72.5    
72.6    
72.7    
72.8    
72.9    
72.9    
73.0    
73.1    
73.2    
73.3    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
73.8    
73.9    
74.0    
74.1    
74.2    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.7    
74.8    
74.9    
75.0    
75.1    
75.1    
75.2    
75.3    
75.4    
75.5    
75.6    
75.6    
75.7    
75.8    
75.9    
76.0    
76.0    
76.1    
76.2    
76.3    
76.4    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
76.9    
77.0    
77.1    
77.2    
77.3    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.8    
77.9    
78.0    
78.1    
78.2    
78.2    
78.3    
78.4    
78.5    
78.6    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.1    
79.2    
79.3    
79.4    
79.5    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.0    
80.1    
80.2    
80.3    
80.4    
80.4    
80.5    
80.6    
80.7    
80.8    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.3    
81.4    
81.5    
81.6    
81.7    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.2    
82.3    
82.4    
82.5    
82.6    
82.6    
82.7    
82.8    
82.9    
83.0    
83.0    
83.1    
83.2    
83.3    
83.4    
83.5    
83.5    
83.6    
83.7    
83.8    
83.9    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.4    
84.5    
84.6    
84.7    
84.8    
84.8    
84.9    
85.0    
85.1    
85.2    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.7    
85.8    
85.9    
86.0    
86.1    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.6    
86.7    
86.8    
86.9    
87.0    
87.0    
87.1    
87.2    
87.3    
87.4    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
87.9    
88.0    
88.1    
88.2    
88.3    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.8    
88.9    
89.0    
89.1    
89.2    
89.2    
89.3    
89.4    
89.5    
89.6    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.1    
90.2    
90.3    
90.4    
90.5    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.0    
91.1    
91.2    
91.3    
91.4    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
91.9    
92.0    
92.1    
92.2    
92.3    
92.3    
92.4    
92.5    
92.6    
92.7    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.2    
93.3    
93.4    
93.5    
93.6    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.1    
94.2    
94.3    
94.4    
94.5    
94.5    
94.6    
94.7    
94.8    
94.9    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.4    
95.5    
95.6    
95.7    
95.8    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.3    
96.4    
96.5    
96.6    
96.7    
96.7    
96.8    
96.9    
97.0    
97.1    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.6    
97.7    
97.8    
97.9    
98.0    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.5    
98.6    
98.7    
98.8    
98.9    
98.9    
99.0    
99.1    
99.2    
99.3    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.8    
99.9    
-found 63 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 104192, rend_intergenic: 104189  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 7121, rend_intergenic: 4048  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12192, rend_intergenic: 7359  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14762, rend_intergenic: 13067  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28415, rend_intergenic: 14913  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48127, rend_intergenic: 42119  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63913, rend_intergenic: 56550  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73487, rend_intergenic: 68945  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88377, rend_intergenic: 79219  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90082, rend_intergenic: 88735  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98200, rend_intergenic: 90389  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102439, rend_intergenic: 101943  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107069, rend_intergenic: 102715  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109876, rend_intergenic: 107144  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115661, rend_intergenic: 109919  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121680, rend_intergenic: 116217  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141758, rend_intergenic: 131533  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146401, rend_intergenic: 144938  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156455, rend_intergenic: 153572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171654, rend_intergenic: 166054  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177522, rend_intergenic: 171656  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204038, rend_intergenic: 189098  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 210862, rend_intergenic: 205639  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 226419, rend_intergenic: 212450  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 227798, rend_intergenic: 226510  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 239203, rend_intergenic: 227805  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 250349, rend_intergenic: 240449  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 274260, rend_intergenic: 250413  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 281007, rend_intergenic: 277393  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 22 predictions persist after filtering for low support