-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_18/scaffold_18_11091165-11242629 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_44144-T1 Valid prediction for GeneMark_model.76534_t Valid prediction for GeneMark_model.76529_t Valid prediction for GeneMark_model.76549_t Valid prediction for GeneMark_model.76523_t Valid prediction for snap_scaffold_18-snap.2390-T1 Valid prediction for Augustus_model.g29547.t1 Valid prediction for snap_scaffold_18-snap.2367-T1 Valid prediction for snap_scaffold_18-snap.2381-T1 Valid prediction for GeneMark_model.76555_t Valid prediction for GeneMark_model.76550_t Valid prediction for snap_scaffold_18-snap.2400-T1 Valid prediction for snap_scaffold_18-snap.2399-T1 Couldn't classify 53781, 53993 Sorry, prediction pasa_asmbl_20956.p1 fails validation. (ATG) CA 49541-49577 GT TGG (GGA) AG 49999-50051 GT AGG (GCT) AG 50243-50323 GT AGG (GGG) AG 50407-50478 GT ACG (CAA) AG 50682-50761 GT AGG (CCT) AG 50857-50932 GT ATG (ACC) AG 51378-51470 GT TGG (CAC) AG 51567-51653 GT AGG (TAC) AG 52140-52297 GT GGG (GCA) AG 52731-52864 GT TGG (TCC) AG 53235-53302 GT AGG (GTG) AG 53781-53993 GC GGG -recovered pasa_asmbl_20956.p1, initial, 49541, 49577 -recovered pasa_asmbl_20956.p1, internal, 49999, 50051 -recovered pasa_asmbl_20956.p1, internal, 50243, 50323 -recovered pasa_asmbl_20956.p1, internal, 50407, 50478 -recovered pasa_asmbl_20956.p1, internal, 50682, 50761 -recovered pasa_asmbl_20956.p1, internal, 50857, 50932 -recovered pasa_asmbl_20956.p1, internal, 51378, 51470 -recovered pasa_asmbl_20956.p1, internal, 51567, 51653 -recovered pasa_asmbl_20956.p1, internal, 52140, 52297 -recovered pasa_asmbl_20956.p1, internal, 52731, 52864 -recovered pasa_asmbl_20956.p1, internal, 53235, 53302 -recovered pasa_asmbl_20956.p1, internal, 53781, 53993 Valid prediction for HiQ_model.g29548.t1 Valid prediction for GeneMark_model.76556_t Valid prediction for GeneMark_model.76552_t Valid prediction for GeneMark_model.76518_t Valid prediction for snap_scaffold_18-snap.2377-T1 Valid prediction for snap_scaffold_18-snap.2403-T1 Valid prediction for GeneMark_model.76527_t Valid prediction for snap_scaffold_18-snap.2393-T1 Valid prediction for GeneMark_model.76545_t Valid prediction for GeneMark_model.76539_t Valid prediction for GeneMark_model.76520_t Valid prediction for snap_scaffold_18-snap.2376-T1 Valid prediction for GeneMark_model.76553_t Valid prediction for GeneMark_model.76559_t Valid prediction for snap_scaffold_18-snap.2364-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for GeneMark_model.76525_t Valid prediction for GeneMark_model.76544_t Valid prediction for GeneMark_model.76558_t Valid prediction for GlimmerHMM_glimmerT_44145-T1 Valid prediction for GeneMark_model.76536_t Valid prediction for GeneMark_model.76547_t Valid prediction for GlimmerHMM_glimmerT_44140-T1 Valid prediction for snap_scaffold_18-snap.2395-T1 Valid prediction for GeneMark_model.76532_t Valid prediction for GeneMark_model.76538_t Valid prediction for GeneMark_model.76540_t Valid prediction for GeneMark_model.76514_t Valid prediction for snap_scaffold_18-snap.2371-T1 Valid prediction for snap_scaffold_18-snap.2380-T1 Valid prediction for snap_scaffold_18-snap.2374-T1 Valid prediction for snap_scaffold_18-snap.2394-T1 Valid prediction for GlimmerHMM_glimmerT_44142-T1 Valid prediction for snap_scaffold_18-snap.2392-T1 Valid prediction for GlimmerHMM_glimmerT_44135-T1 Valid prediction for GeneMark_model.76543_t Valid prediction for snap_scaffold_18-snap.2369-T1 Valid prediction for snap_scaffold_18-snap.2385-T1 Valid prediction for GlimmerHMM_glimmerT_44148-T1 Couldn't classify 56940, 57042 Sorry, prediction pasa_asmbl_20958.p1 fails validation. (CAG) CA 56940-57042 GT GGG (AAC) AG 57679-57860 GT AGG (GTG) AG 58476-58605 GT CGG (TGT) AG 58822-58919 GT TGG (CTT) AG 59235-59373 GT TGG (AGG) AG 59459-59557 GT TGG (GTG) AG 59827-59957 GG AGG -recovered pasa_asmbl_20958.p1, terminal, 59827, 59957 -recovered pasa_asmbl_20958.p1, internal, 57679, 57860 -recovered pasa_asmbl_20958.p1, internal, 58476, 58605 -recovered pasa_asmbl_20958.p1, internal, 58822, 58919 -recovered pasa_asmbl_20958.p1, internal, 59235, 59373 -recovered pasa_asmbl_20958.p1, internal, 59459, 59557 Valid prediction for GlimmerHMM_glimmerT_44137-T1 Valid prediction for GlimmerHMM_glimmerT_44136-T1 Valid prediction for Augustus_model.g29546.t1 Valid prediction for snap_scaffold_18-snap.2397-T1 Valid prediction for GeneMark_model.76513_t Valid prediction for GlimmerHMM_glimmerT_44149-T1 Valid prediction for snap_scaffold_18-snap.2387-T1 Valid prediction for GeneMark_model.76541_t Valid prediction for snap_scaffold_18-snap.2391-T1 Valid prediction for snap_scaffold_18-snap.2383-T1 Valid prediction for snap_scaffold_18-snap.2373-T1 Valid prediction for GeneMark_model.76530_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_44146-T1 Valid prediction for GeneMark_model.76533_t Valid prediction for snap_scaffold_18-snap.2398-T1 Valid prediction for GeneMark_model.76517_t Valid prediction for snap_scaffold_18-snap.2375-T1 Valid prediction for GeneMark_model.76557_t Valid prediction for GeneMark_model.76519_t Valid prediction for CodingQuarry_transcript_23851-T1 Valid prediction for snap_scaffold_18-snap.2396-T1 Valid prediction for GeneMark_model.76551_t Valid prediction for snap_scaffold_18-snap.2386-T1 Valid prediction for GeneMark_model.76526_t Couldn't classify 72050, 72229 Sorry, prediction pasa_asmbl_20153.p1 fails validation. (GTG) AG 72050-72229 GT AGG (ATC) AG 72560-72647 GT AGG (GCA) AG 72741-72847 GT TGG (GGT) AG 73216-73407 GT AGG (GAC) AG 74071-74284 GT GGG (GTG) AG 74550-74761 GT AGG (ATC) AG 75947-76054 GT AGG (CTG) AG 76846-77034 GT AGG (ATG) AG 77719-78117 CA GAC -recovered pasa_asmbl_20153.p1, terminal, 77719, 78117 -recovered pasa_asmbl_20153.p1, internal, 72050, 72229 -recovered pasa_asmbl_20153.p1, internal, 72560, 72647 -recovered pasa_asmbl_20153.p1, internal, 72741, 72847 -recovered pasa_asmbl_20153.p1, internal, 73216, 73407 -recovered pasa_asmbl_20153.p1, internal, 74071, 74284 -recovered pasa_asmbl_20153.p1, internal, 74550, 74761 -recovered pasa_asmbl_20153.p1, internal, 75947, 76054 -recovered pasa_asmbl_20153.p1, internal, 76846, 77034 Valid prediction for GeneMark_model.76537_t Couldn't classify 60062, 60260 Couldn't classify 61427, 61551 Sorry, prediction pasa_asmbl_20155.p1 fails validation. (GGT) CA 60062-60260 GT TCG (ACT) AG 60688-60945 GT TGG (GTG) AG 61427-61551 GG CAG -recovered pasa_asmbl_20155.p1, internal, 60688, 60945 Valid prediction for snap_scaffold_18-snap.2382-T1 Valid prediction for snap_scaffold_18-snap.2402-T1 Valid prediction for Augustus_model.g29551.t1 Valid prediction for Augustus_model.g29550.t1 Valid prediction for snap_scaffold_18-snap.2370-T1 Valid prediction for GeneMark_model.76528_t Valid prediction for GeneMark_model.76524_t Valid prediction for GeneMark_model.76521_t Valid prediction for snap_scaffold_18-snap.2384-T1 Valid prediction for GeneMark_model.76542_t Couldn't classify 64403, 64436 Couldn't classify 71095, 71158 Sorry, prediction pasa_asmbl_20154.p1 fails validation. (AAA) AT 64403-64436 GT AGG (ATA) AG 67176-67331 GT AGG (GTC) AG 67760-67974 GT AGG (AAA) AG 68429-68671 GT TGG (TCC) AG 69096-69337 GT AAG (GTG) AG 71095-71158 AT ACA -recovered pasa_asmbl_20154.p1, internal, 67176, 67331 -recovered pasa_asmbl_20154.p1, internal, 67760, 67974 -recovered pasa_asmbl_20154.p1, internal, 68429, 68671 -recovered pasa_asmbl_20154.p1, internal, 69096, 69337 Valid prediction for GeneMark_model.76512_t Valid prediction for GeneMark_model.76546_t Valid prediction for snap_scaffold_18-snap.2368-T1 Valid prediction for GlimmerHMM_glimmerT_44150-T1 Valid prediction for GlimmerHMM_glimmerT_44139-T1 Valid prediction for GlimmerHMM_glimmerT_44141-T1 Valid prediction for GeneMark_model.76560_t Valid prediction for snap_scaffold_18-snap.2388-T1 Valid prediction for GeneMark_model.76535_t Valid prediction for snap_scaffold_18-snap.2366-T1 Valid prediction for snap_scaffold_18-snap.2379-T1 Valid prediction for Augustus_model.g29549.t1 Valid prediction for snap_scaffold_18-snap.2389-T1 Valid prediction for GlimmerHMM_glimmerT_44138-T1 Valid prediction for GeneMark_model.76554_t Couldn't classify 88347, 88415 Sorry, prediction pasa_asmbl_20151.p1 fails validation. (ATG) AA 85293-85370 GT CCG (AGC) AG 85623-85812 GT AGG (ACA) AG 86192-86271 GT AGG (ATT) AG 86737-86814 GT CGG (AGA) AG 87099-87235 GT AGG (GAC) AG 87942-88000 GT AGG (GTG) AG 88103-88143 GT CGG (CTA) AG 88347-88415 GG AGG -recovered pasa_asmbl_20151.p1, initial, 85293, 85370 -recovered pasa_asmbl_20151.p1, internal, 85623, 85812 -recovered pasa_asmbl_20151.p1, internal, 86192, 86271 -recovered pasa_asmbl_20151.p1, internal, 86737, 86814 -recovered pasa_asmbl_20151.p1, internal, 87099, 87235 -recovered pasa_asmbl_20151.p1, internal, 87942, 88000 -recovered pasa_asmbl_20151.p1, internal, 88103, 88143 Valid prediction for GeneMark_model.76548_t Couldn't classify 80406, 80732 Sorry, prediction pasa_asmbl_20263.p1 fails validation. (ATG) AT 80406-80732 CT TCC Valid prediction for GeneMark_model.76531_t Valid prediction for snap_scaffold_18-snap.2378-T1 Valid prediction for snap_scaffold_18-snap.2372-T1 Valid prediction for snap_scaffold_18-snap.2401-T1 Valid prediction for GeneMark_model.76515_t Valid prediction for snap_scaffold_18-snap.2404-T1 Valid prediction for GeneMark_model.76522_t Valid prediction for GlimmerHMM_glimmerT_44143-T1 Valid prediction for GlimmerHMM_glimmerT_44147-T1 Valid prediction for snap_scaffold_18-snap.2365-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6209, rend_intergenic: 2389 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 7832, rend_intergenic: 6580 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 20875, rend_intergenic: 15100 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 27751, rend_intergenic: 27554 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 30006, rend_intergenic: 28173 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 46709, rend_intergenic: 45597 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 54989, rend_intergenic: 51127 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 57896, rend_intergenic: 55410 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 65807, rend_intergenic: 63813 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 71265, rend_intergenic: 70292 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 72008, rend_intergenic: 71543 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 75738, rend_intergenic: 75610 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 77100, rend_intergenic: 75951 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 98624, rend_intergenic: 77235 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113816, rend_intergenic: 111921 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 129099, rend_intergenic: 118937 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 138888, rend_intergenic: 131143 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 143006, rend_intergenic: 141179 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 151465 -exon list size: 631 building trellis 0.2 0.3 0.5 0.6 0.8 0.9 1.1 1.3 1.4 1.6 1.7 1.9 2.1 2.2 2.4 2.5 2.7 2.8 3.0 3.2 3.3 3.5 3.6 3.8 3.9 4.1 4.3 4.4 4.6 4.7 4.9 5.1 5.2 5.4 5.5 5.7 5.8 6.0 6.2 6.3 6.5 6.6 6.8 7.0 7.1 7.3 7.4 7.6 7.7 7.9 8.1 8.2 8.4 8.5 8.7 8.8 9.0 9.2 9.3 9.5 9.6 9.8 10.0 10.1 10.3 10.4 10.6 10.7 10.9 11.1 11.2 11.4 11.5 11.7 11.8 12.0 12.2 12.3 12.5 12.6 12.8 13.0 13.1 13.3 13.4 13.6 13.7 13.9 14.1 14.2 14.4 14.5 14.7 14.8 15.0 15.2 15.3 15.5 15.6 15.8 16.0 16.1 16.3 16.4 16.6 16.7 16.9 17.1 17.2 17.4 17.5 17.7 17.9 18.0 18.2 18.3 18.5 18.6 18.8 19.0 19.1 19.3 19.4 19.6 19.7 19.9 20.1 20.2 20.4 20.5 20.7 20.9 21.0 21.2 21.3 21.5 21.6 21.8 22.0 22.1 22.3 22.4 22.6 22.7 22.9 23.1 23.2 23.4 23.5 23.7 23.9 24.0 24.2 24.3 24.5 24.6 24.8 25.0 25.1 25.3 25.4 25.6 25.8 25.9 26.1 26.2 26.4 26.5 26.7 26.9 27.0 27.2 27.3 27.5 27.6 27.8 28.0 28.1 28.3 28.4 28.6 28.8 28.9 29.1 29.2 29.4 29.5 29.7 29.9 30.0 30.2 30.3 30.5 30.6 30.8 31.0 31.1 31.3 31.4 31.6 31.8 31.9 32.1 32.2 32.4 32.5 32.7 32.9 33.0 33.2 33.3 33.5 33.6 33.8 34.0 34.1 34.3 34.4 34.6 34.8 34.9 35.1 35.2 35.4 35.5 35.7 35.9 36.0 36.2 36.3 36.5 36.7 36.8 37.0 37.1 37.3 37.4 37.6 37.8 37.9 38.1 38.2 38.4 38.5 38.7 38.9 39.0 39.2 39.3 39.5 39.7 39.8 40.0 40.1 40.3 40.4 40.6 40.8 40.9 41.1 41.2 41.4 41.5 41.7 41.9 42.0 42.2 42.3 42.5 42.7 42.8 43.0 43.1 43.3 43.4 43.6 43.8 43.9 44.1 44.2 44.4 44.5 44.7 44.9 45.0 45.2 45.3 45.5 45.7 45.8 46.0 46.1 46.3 46.4 46.6 46.8 46.9 47.1 47.2 47.4 47.6 47.7 47.9 48.0 48.2 48.3 48.5 48.7 48.8 49.0 49.1 49.3 49.4 49.6 49.8 49.9 50.1 50.2 50.4 50.6 50.7 50.9 51.0 51.2 51.3 51.5 51.7 51.8 52.0 52.1 52.3 52.4 52.6 52.8 52.9 53.1 53.2 53.4 53.6 53.7 53.9 54.0 54.2 54.3 54.5 54.7 54.8 55.0 55.1 55.3 55.5 55.6 55.8 55.9 56.1 56.2 56.4 56.6 56.7 56.9 57.0 57.2 57.3 57.5 57.7 57.8 58.0 58.1 58.3 58.5 58.6 58.8 58.9 59.1 59.2 59.4 59.6 59.7 59.9 60.0 60.2 60.3 60.5 60.7 60.8 61.0 61.1 61.3 61.5 61.6 61.8 61.9 62.1 62.2 62.4 62.6 62.7 62.9 63.0 63.2 63.3 63.5 63.7 63.8 64.0 64.1 64.3 64.5 64.6 64.8 64.9 65.1 65.2 65.4 65.6 65.7 65.9 66.0 66.2 66.4 66.5 66.7 66.8 67.0 67.1 67.3 67.5 67.6 67.8 67.9 68.1 68.2 68.4 68.6 68.7 68.9 69.0 69.2 69.4 69.5 69.7 69.8 70.0 70.1 70.3 70.5 70.6 70.8 70.9 71.1 71.2 71.4 71.6 71.7 71.9 72.0 72.2 72.4 72.5 72.7 72.8 73.0 73.1 73.3 73.5 73.6 73.8 73.9 74.1 74.2 74.4 74.6 74.7 74.9 75.0 75.2 75.4 75.5 75.7 75.8 76.0 76.1 76.3 76.5 76.6 76.8 76.9 77.1 77.3 77.4 77.6 77.7 77.9 78.0 78.2 78.4 78.5 78.7 78.8 79.0 79.1 79.3 79.5 79.6 79.8 79.9 80.1 80.3 80.4 80.6 80.7 80.9 81.0 81.2 81.4 81.5 81.7 81.8 82.0 82.1 82.3 82.5 82.6 82.8 82.9 83.1 83.3 83.4 83.6 83.7 83.9 84.0 84.2 84.4 84.5 84.7 84.8 85.0 85.2 85.3 85.5 85.6 85.8 85.9 86.1 86.3 86.4 86.6 86.7 86.9 87.0 87.2 87.4 87.5 87.7 87.8 88.0 88.2 88.3 88.5 88.6 88.8 88.9 89.1 89.3 89.4 89.6 89.7 89.9 90.0 90.2 90.4 90.5 90.7 90.8 91.0 91.2 91.3 91.5 91.6 91.8 91.9 92.1 92.3 92.4 92.6 92.7 92.9 93.0 93.2 93.4 93.5 93.7 93.8 94.0 94.2 94.3 94.5 94.6 94.8 94.9 95.1 95.3 95.4 95.6 95.7 95.9 96.1 96.2 96.4 96.5 96.7 96.8 97.0 97.2 97.3 97.5 97.6 97.8 97.9 98.1 98.3 98.4 98.6 98.7 98.9 99.1 99.2 99.4 99.5 99.7 99.8 -found 27 predictions from path traversal Error with prediction: snap lend_intergenic: 6209, rend_intergenic: 2389 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 7832, rend_intergenic: 6580 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 20875, rend_intergenic: 15100 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 27751, rend_intergenic: 27554 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 30006, rend_intergenic: 28173 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 46709, rend_intergenic: 45597 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 54989, rend_intergenic: 51127 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 57896, rend_intergenic: 55410 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 65807, rend_intergenic: 63813 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 71265, rend_intergenic: 70292 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 72008, rend_intergenic: 71543 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 75738, rend_intergenic: 75610 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 77100, rend_intergenic: 75951 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 98624, rend_intergenic: 77235 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113816, rend_intergenic: 111921 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 129099, rend_intergenic: 118937 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 138888, rend_intergenic: 131143 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 143006, rend_intergenic: 141179 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 15 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 29336 -exon list size: 93 building trellis 1.1 2.1 3.2 4.2 5.3 6.3 7.4 8.4 9.5 10.5 11.6 12.6 13.7 14.7 15.8 16.8 17.9 18.9 20.0 21.1 22.1 23.2 24.2 25.3 26.3 27.4 28.4 29.5 30.5 31.6 32.6 33.7 34.7 35.8 36.8 37.9 38.9 40.0 41.1 42.1 43.2 44.2 45.3 46.3 47.4 48.4 49.5 50.5 51.6 52.6 53.7 54.7 55.8 56.8 57.9 58.9 60.0 61.1 62.1 63.2 64.2 65.3 66.3 67.4 68.4 69.5 70.5 71.6 72.6 73.7 74.7 75.8 76.8 77.9 78.9 80.0 81.1 82.1 83.2 84.2 85.3 86.3 87.4 88.4 89.5 90.5 91.6 92.6 93.7 94.7 95.8 96.8 97.9 98.9 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 28286 -exon list size: 89 building trellis 1.1 2.2 3.3 4.4 5.5 6.6 7.7 8.8 9.9 11.0 12.1 13.2 14.3 15.4 16.5 17.6 18.7 19.8 20.9 22.0 23.1 24.2 25.3 26.4 27.5 28.6 29.7 30.8 31.9 33.0 34.1 35.2 36.3 37.4 38.5 39.6 40.7 41.8 42.9 44.0 45.1 46.2 47.3 48.4 49.5 50.5 51.6 52.7 53.8 54.9 56.0 57.1 58.2 59.3 60.4 61.5 62.6 63.7 64.8 65.9 67.0 68.1 69.2 70.3 71.4 72.5 73.6 74.7 75.8 76.9 78.0 79.1 80.2 81.3 82.4 83.5 84.6 85.7 86.8 87.9 89.0 90.1 91.2 92.3 93.4 94.5 95.6 96.7 97.8 98.9 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 27612 -exon list size: 86 building trellis 1.1 2.3 3.4 4.5 5.7 6.8 8.0 9.1 10.2 11.4 12.5 13.6 14.8 15.9 17.0 18.2 19.3 20.5 21.6 22.7 23.9 25.0 26.1 27.3 28.4 29.5 30.7 31.8 33.0 34.1 35.2 36.4 37.5 38.6 39.8 40.9 42.0 43.2 44.3 45.5 46.6 47.7 48.9 50.0 51.1 52.3 53.4 54.5 55.7 56.8 58.0 59.1 60.2 61.4 62.5 63.6 64.8 65.9 67.0 68.2 69.3 70.5 71.6 72.7 73.9 75.0 76.1 77.3 78.4 79.5 80.7 81.8 83.0 84.1 85.2 86.4 87.5 88.6 89.8 90.9 92.0 93.2 94.3 95.5 96.6 97.7 98.9 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 26854 -exon list size: 81 building trellis 1.2 2.4 3.6 4.8 6.0 7.2 8.4 9.6 10.8 12.0 13.3 14.5 15.7 16.9 18.1 19.3 20.5 21.7 22.9 24.1 25.3 26.5 27.7 28.9 30.1 31.3 32.5 33.7 34.9 36.1 37.3 38.6 39.8 41.0 42.2 43.4 44.6 45.8 47.0 48.2 49.4 50.6 51.8 53.0 54.2 55.4 56.6 57.8 59.0 60.2 61.4 62.7 63.9 65.1 66.3 67.5 68.7 69.9 71.1 72.3 73.5 74.7 75.9 77.1 78.3 79.5 80.7 81.9 83.1 84.3 85.5 86.7 88.0 89.2 90.4 91.6 92.8 94.0 95.2 96.4 97.6 98.8 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 25679 -exon list size: 80 building trellis 1.2 2.4 3.7 4.9 6.1 7.3 8.5 9.8 11.0 12.2 13.4 14.6 15.9 17.1 18.3 19.5 20.7 22.0 23.2 24.4 25.6 26.8 28.0 29.3 30.5 31.7 32.9 34.1 35.4 36.6 37.8 39.0 40.2 41.5 42.7 43.9 45.1 46.3 47.6 48.8 50.0 51.2 52.4 53.7 54.9 56.1 57.3 58.5 59.8 61.0 62.2 63.4 64.6 65.9 67.1 68.3 69.5 70.7 72.0 73.2 74.4 75.6 76.8 78.0 79.3 80.5 81.7 82.9 84.1 85.4 86.6 87.8 89.0 90.2 91.5 92.7 93.9 95.1 96.3 97.6 98.8 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 24204 -exon list size: 75 building trellis 1.3 2.6 3.9 5.2 6.5 7.8 9.1 10.4 11.7 13.0 14.3 15.6 16.9 18.2 19.5 20.8 22.1 23.4 24.7 26.0 27.3 28.6 29.9 31.2 32.5 33.8 35.1 36.4 37.7 39.0 40.3 41.6 42.9 44.2 45.5 46.8 48.1 49.4 50.6 51.9 53.2 54.5 55.8 57.1 58.4 59.7 61.0 62.3 63.6 64.9 66.2 67.5 68.8 70.1 71.4 72.7 74.0 75.3 76.6 77.9 79.2 80.5 81.8 83.1 84.4 85.7 87.0 88.3 89.6 90.9 92.2 93.5 94.8 96.1 97.4 98.7 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 23777 -exon list size: 72 building trellis 1.4 2.7 4.1 5.4 6.8 8.1 9.5 10.8 12.2 13.5 14.9 16.2 17.6 18.9 20.3 21.6 23.0 24.3 25.7 27.0 28.4 29.7 31.1 32.4 33.8 35.1 36.5 37.8 39.2 40.5 41.9 43.2 44.6 45.9 47.3 48.6 50.0 51.4 52.7 54.1 55.4 56.8 58.1 59.5 60.8 62.2 63.5 64.9 66.2 67.6 68.9 70.3 71.6 73.0 74.3 75.7 77.0 78.4 79.7 81.1 82.4 83.8 85.1 86.5 87.8 89.2 90.5 91.9 93.2 94.6 95.9 97.3 98.6 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 22903 -exon list size: 69 building trellis 1.4 2.8 4.2 5.6 7.0 8.5 9.9 11.3 12.7 14.1 15.5 16.9 18.3 19.7 21.1 22.5 23.9 25.4 26.8 28.2 29.6 31.0 32.4 33.8 35.2 36.6 38.0 39.4 40.8 42.3 43.7 45.1 46.5 47.9 49.3 50.7 52.1 53.5 54.9 56.3 57.7 59.2 60.6 62.0 63.4 64.8 66.2 67.6 69.0 70.4 71.8 73.2 74.6 76.1 77.5 78.9 80.3 81.7 83.1 84.5 85.9 87.3 88.7 90.1 91.5 93.0 94.4 95.8 97.2 98.6 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 21875 -exon list size: 67 building trellis 1.4 2.9 4.3 5.8 7.2 8.7 10.1 11.6 13.0 14.5 15.9 17.4 18.8 20.3 21.7 23.2 24.6 26.1 27.5 29.0 30.4 31.9 33.3 34.8 36.2 37.7 39.1 40.6 42.0 43.5 44.9 46.4 47.8 49.3 50.7 52.2 53.6 55.1 56.5 58.0 59.4 60.9 62.3 63.8 65.2 66.7 68.1 69.6 71.0 72.5 73.9 75.4 76.8 78.3 79.7 81.2 82.6 84.1 85.5 87.0 88.4 89.9 91.3 92.8 94.2 95.7 97.1 98.6 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 20384 -exon list size: 58 building trellis 1.7 3.3 5.0 6.7 8.3 10.0 11.7 13.3 15.0 16.7 18.3 20.0 21.7 23.3 25.0 26.7 28.3 30.0 31.7 33.3 35.0 36.7 38.3 40.0 41.7 43.3 45.0 46.7 48.3 50.0 51.7 53.3 55.0 56.7 58.3 60.0 61.7 63.3 65.0 66.7 68.3 70.0 71.7 73.3 75.0 76.7 78.3 80.0 81.7 83.3 85.0 86.7 88.3 90.0 91.7 93.3 95.0 96.7 98.3 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 19017 -exon list size: 55 building trellis 1.8 3.5 5.3 7.0 8.8 10.5 12.3 14.0 15.8 17.5 19.3 21.1 22.8 24.6 26.3 28.1 29.8 31.6 33.3 35.1 36.8 38.6 40.4 42.1 43.9 45.6 47.4 49.1 50.9 52.6 54.4 56.1 57.9 59.6 61.4 63.2 64.9 66.7 68.4 70.2 71.9 73.7 75.4 77.2 78.9 80.7 82.5 84.2 86.0 87.7 89.5 91.2 93.0 94.7 96.5 98.2 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 15362 -exon list size: 47 building trellis 2.0 4.1 6.1 8.2 10.2 12.2 14.3 16.3 18.4 20.4 22.4 24.5 26.5 28.6 30.6 32.7 34.7 36.7 38.8 40.8 42.9 44.9 46.9 49.0 51.0 53.1 55.1 57.1 59.2 61.2 63.3 65.3 67.3 69.4 71.4 73.5 75.5 77.6 79.6 81.6 83.7 85.7 87.8 89.8 91.8 93.9 95.9 98.0 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 14422 -exon list size: 41 building trellis 2.3 4.7 7.0 9.3 11.6 14.0 16.3 18.6 20.9 23.3 25.6 27.9 30.2 32.6 34.9 37.2 39.5 41.9 44.2 46.5 48.8 51.2 53.5 55.8 58.1 60.5 62.8 65.1 67.4 69.8 72.1 74.4 76.7 79.1 81.4 83.7 86.0 88.4 90.7 93.0 95.3 97.7 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 13848 -exon list size: 39 building trellis 2.4 4.9 7.3 9.8 12.2 14.6 17.1 19.5 22.0 24.4 26.8 29.3 31.7 34.1 36.6 39.0 41.5 43.9 46.3 48.8 51.2 53.7 56.1 58.5 61.0 63.4 65.9 68.3 70.7 73.2 75.6 78.0 80.5 82.9 85.4 87.8 90.2 92.7 95.1 97.6 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 12962 -exon list size: 36 building trellis 2.6 5.3 7.9 10.5 13.2 15.8 18.4 21.1 23.7 26.3 28.9 31.6 34.2 36.8 39.5 42.1 44.7 47.4 50.0 52.6 55.3 57.9 60.5 63.2 65.8 68.4 71.1 73.7 76.3 78.9 81.6 84.2 86.8 89.5 92.1 94.7 97.4 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 12474 -exon list size: 34 building trellis 2.8 5.6 8.3 11.1 13.9 16.7 19.4 22.2 25.0 27.8 30.6 33.3 36.1 38.9 41.7 44.4 47.2 50.0 52.8 55.6 58.3 61.1 63.9 66.7 69.4 72.2 75.0 77.8 80.6 83.3 86.1 88.9 91.7 94.4 97.2 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 11452 -exon list size: 32 building trellis 2.9 5.9 8.8 11.8 14.7 17.6 20.6 23.5 26.5 29.4 32.4 35.3 38.2 41.2 44.1 47.1 50.0 52.9 55.9 58.8 61.8 64.7 67.6 70.6 73.5 76.5 79.4 82.4 85.3 88.2 91.2 94.1 97.1 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support