-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_18/scaffold_18_10241744-10456161 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for pasa_asmbl_21158.p1 Valid prediction for snap_scaffold_18-snap.2196-T1 Valid prediction for GeneMark_model.76246_t Valid prediction for GeneMark_model.76279_t Valid prediction for snap_scaffold_18-snap.2183-T1 Valid prediction for GlimmerHMM_glimmerT_44043-T1 Valid prediction for snap_scaffold_18-snap.2224-T1 Valid prediction for HiQ_model.g29487.t1 Valid prediction for Augustus_model.g29494.t1 Couldn't classify 84435, 84558 Sorry, prediction GeneMark_model.76265_t fails validation. (ATG) GC 84220-84225 GT CGG (TCC) AG 84250-84324 GT AGG (ATC) AG 84435-84558 GT CGG -recovered GeneMark_model.76265_t, initial, 84220, 84225 -recovered GeneMark_model.76265_t, internal, 84250, 84324 -recovered GeneMark_model.76265_t, internal, 84435, 84558 Valid prediction for GeneMark_model.76277_t Valid prediction for GlimmerHMM_glimmerT_44054-T1 Valid prediction for snap_scaffold_18-snap.2210-T1 Valid prediction for GeneMark_model.76242_t Valid prediction for snap_scaffold_18-snap.2180-T1 Valid prediction for GeneMark_model.76255_t Valid prediction for snap_scaffold_18-snap.2216-T1 Valid prediction for GeneMark_model.76275_t Valid prediction for GlimmerHMM_glimmerT_44044-T1 Valid prediction for snap_scaffold_18-snap.2188-T1 Valid prediction for GlimmerHMM_glimmerT_44059-T1 Valid prediction for GeneMark_model.76247_t Valid prediction for snap_scaffold_18-snap.2217-T1 Valid prediction for GlimmerHMM_glimmerT_44056-T1 Valid prediction for GeneMark_model.76271_t Valid prediction for GeneMark_model.76269_t Valid prediction for GlimmerHMM_glimmerT_44057-T1 Valid prediction for Augustus_model.g29498.t1 Valid prediction for GlimmerHMM_glimmerT_44065-T1 Valid prediction for GeneMark_model.76244_t Valid prediction for CodingQuarry_transcript_23843-T1 Valid prediction for GlimmerHMM_glimmerT_44045-T1 Valid prediction for Augustus_model.g29501.t1 Valid prediction for GeneMark_model.76257_t Couldn't classify 112526, 112558 Sorry, prediction pasa_asmbl_20940.p1 fails validation. (CCA) TC 112526-112558 GT AGG (GCC) AG 112826-113123 GT AGG (ACA) AG 113445-113526 GT AGG (CTC) AG 113733-113742 AC GAA -recovered pasa_asmbl_20940.p1, terminal, 113733, 113742 -recovered pasa_asmbl_20940.p1, internal, 112826, 113123 -recovered pasa_asmbl_20940.p1, internal, 113445, 113526 Valid prediction for GeneMark_model.76286_t Valid prediction for GlimmerHMM_glimmerT_44042-T1 Valid prediction for Augustus_model.g29484.t1 Valid prediction for GlimmerHMM_glimmerT_44064-T1 Valid prediction for GeneMark_model.76281_t Valid prediction for pasa_asmbl_20941.p1 Valid prediction for snap_scaffold_18-snap.2206-T1 Couldn't classify 177365, 177556 Sorry, prediction pasa_asmbl_21128.p1 fails validation. (CAG) AC 177365-177556 GT CTG (GAG) AG 178064-178276 GT AGG (GGT) AG 178671-178742 GA AAG -recovered pasa_asmbl_21128.p1, terminal, 178671, 178742 -recovered pasa_asmbl_21128.p1, internal, 178064, 178276 Valid prediction for CodingQuarry_transcript_23846-T1 Valid prediction for Augustus_model.g29503.t1 Valid prediction for snap_scaffold_18-snap.2226-T1 Valid prediction for GlimmerHMM_glimmerT_44046-T1 Valid prediction for GeneMark_model.76253_t Valid prediction for snap_scaffold_18-snap.2203-T1 Valid prediction for snap_scaffold_18-snap.2201-T1 Valid prediction for GlimmerHMM_glimmerT_44053-T1 Valid prediction for snap_scaffold_18-snap.2221-T1 Couldn't classify 30999, 31154 Sorry, prediction pasa_asmbl_21096.p1 fails validation. (GTG) AG 30999-31154 GT AGG (GCG) AG 31724-31866 GT AGG (GAT) AG 32000-32082 GT AGG (GTG) AG 32324-32445 GC AAG -recovered pasa_asmbl_21096.p1, terminal, 32324, 32445 -recovered pasa_asmbl_21096.p1, internal, 30999, 31154 -recovered pasa_asmbl_21096.p1, internal, 31724, 31866 -recovered pasa_asmbl_21096.p1, internal, 32000, 32082 -recovered pasa_asmbl_21096.p1, internal, 32324, 32445 Couldn't classify 148765, 148852 Couldn't classify 149973, 150181 Sorry, prediction pasa_asmbl_21109.p1 fails validation. (CCG) CC 148765-148852 GT GGG (GTC) AG 149973-150181 GT AGG -recovered pasa_asmbl_21109.p1, internal, 149973, 150181 Valid prediction for GeneMark_model.76260_t Valid prediction for snap_scaffold_18-snap.2194-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for Augustus_model.g29490.t1 Valid prediction for snap_scaffold_18-snap.2213-T1 Valid prediction for snap_scaffold_18-snap.2207-T1 Couldn't classify 163419, 163460 Couldn't classify 164211, 164314 Sorry, prediction pasa_asmbl_20944.p1 fails validation. (ATC) AC 163419-163460 GT TGG (AGT) AG 163578-163615 GT GAG (ACC) AG 163733-163899 GT AGG (TTC) AG 164211-164314 AA ACA add_exon() Sorry, pasa_asmbl_20944.p1 163578-163615-terminal-2 is invalid. -recovered pasa_asmbl_20944.p1, terminal, 163578, 163615 add_exon() Sorry, pasa_asmbl_20944.p1 163733-163899-terminal-2 is invalid. -recovered pasa_asmbl_20944.p1, terminal, 163733, 163899 -recovered pasa_asmbl_20944.p1, internal, 163578, 163615 -recovered pasa_asmbl_20944.p1, internal, 163733, 163899 Valid prediction for GeneMark_model.76236_t Valid prediction for HiQ_model.g29502.t1 Valid prediction for GlimmerHMM_glimmerT_44047-T1 Valid prediction for Augustus_model.g29497.t1 Valid prediction for GlimmerHMM_glimmerT_44060-T1 Valid prediction for snap_scaffold_18-snap.2209-T1 Couldn't classify 29297, 29444 Sorry, prediction pasa_asmbl_20938.p1 fails validation. (ATG) AC 27426-27567 GT GGG (AGG) AG 28154-28356 GT AGG (GGA) AG 28562-28723 GT CGG (GAT) AG 29019-29191 GT AGG (GAT) AG 29297-29444 AA GGA -recovered pasa_asmbl_20938.p1, initial, 27426, 27567 -recovered pasa_asmbl_20938.p1, internal, 28154, 28356 -recovered pasa_asmbl_20938.p1, internal, 28562, 28723 -recovered pasa_asmbl_20938.p1, internal, 29019, 29191 Valid prediction for Augustus_model.g29488.t1 Valid prediction for GeneMark_model.76261_t Valid prediction for GeneMark_model.76238_t Valid prediction for GlimmerHMM_glimmerT_44052-T1 Valid prediction for GeneMark_model.76289_t Valid prediction for snap_scaffold_18-snap.2219-T1 Valid prediction for GlimmerHMM_glimmerT_44050-T1 Valid prediction for GeneMark_model.76282_t Valid prediction for snap_scaffold_18-snap.2185-T1 Valid prediction for GeneMark_model.76258_t Valid prediction for snap_scaffold_18-snap.2187-T1 Couldn't classify 152341, 152395 Couldn't classify 155515, 155867 Sorry, prediction pasa_asmbl_20942.p1 fails validation. (GGA) CT 152341-152395 GT TGG (GTA) AG 153264-153372 GT CTG (GTG) AG 153542-153727 GT AAG (AAT) AG 154258-154406 GT GGG (CTG) AG 154795-154929 GT TGG (TTC) AG 155515-155867 AA GGA -recovered pasa_asmbl_20942.p1, internal, 153264, 153372 -recovered pasa_asmbl_20942.p1, internal, 153542, 153727 -recovered pasa_asmbl_20942.p1, internal, 154258, 154406 -recovered pasa_asmbl_20942.p1, internal, 154795, 154929 Valid prediction for GeneMark_model.76273_t Valid prediction for snap_scaffold_18-snap.2212-T1 Valid prediction for CodingQuarry_transcript_23845-T1 Valid prediction for GeneMark_model.76250_t Valid prediction for Augustus_model.g29495.t1 Valid prediction for GeneMark_model.76267_t Valid prediction for GeneMark_model.76292_t Valid prediction for GlimmerHMM_glimmerT_44062-T1 Valid prediction for snap_scaffold_18-snap.2199-T1 Valid prediction for Augustus_model.g29489.t1 Couldn't classify 83410, 83431 Couldn't classify 84435, 84560 Sorry, prediction pasa_asmbl_21148.p1 fails validation. (CCC) CA 83410-83431 GT GGG (TGT) AG 84088-84182 GT TGG (GAT) AG 84262-84324 GT AGG (ATC) AG 84435-84560 GA GTG -recovered pasa_asmbl_21148.p1, internal, 84088, 84182 -recovered pasa_asmbl_21148.p1, internal, 84262, 84324 Valid prediction for GeneMark_model.76290_t Valid prediction for snap_scaffold_18-snap.2211-T1 Valid prediction for GeneMark_model.76248_t Valid prediction for GeneMark_model.76284_t Valid prediction for Augustus_model.g29492.t1 Valid prediction for GeneMark_model.76263_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_18-snap.2197-T1 Valid prediction for GeneMark_model.76254_t Valid prediction for GeneMark_model.76249_t Valid prediction for snap_scaffold_18-snap.2190-T1 Valid prediction for snap_scaffold_18-snap.2195-T1 Valid prediction for GeneMark_model.76270_t Valid prediction for CodingQuarry_transcript_23841-T1 Valid prediction for snap_scaffold_18-snap.2222-T1 Valid prediction for GeneMark_model.76272_t Valid prediction for GeneMark_model.76252_t Valid prediction for GeneMark_model.76256_t Valid prediction for GeneMark_model.76268_t Valid prediction for snap_scaffold_18-snap.2191-T1 Valid prediction for GeneMark_model.76288_t Valid prediction for GeneMark_model.76245_t Valid prediction for CodingQuarry_transcript_23840-T1 Valid prediction for GeneMark_model.76240_t Valid prediction for GeneMark_model.76251_t Valid prediction for GlimmerHMM_glimmerT_44051-T1 Couldn't classify 113612, 114232 Sorry, prediction pasa_asmbl_20138.p1 fails validation. (GGG) GT 113612-114232 GT AGG Valid prediction for pasa_asmbl_20134.p1 Valid prediction for Augustus_model.g29485.t1 Valid prediction for Augustus_model.g29496.t1 Valid prediction for GeneMark_model.76285_t Valid prediction for Augustus_model.g29491.t1 Valid prediction for snap_scaffold_18-snap.2184-T1 Couldn't classify 84320, 84379 Sorry, prediction pasa_asmbl_20139.p1 fails validation. (GCT) AG 84320-84379 GT TGG (AAG) AG 85628-85796 GT AGG (AGT) AG 86072-86172 GT AGG (GTA) AG 87812-87887 GT AGG (ATG) AG 88239-88273 GT TCG (ATT) AG 88464-88559 GC AGG (GTG) AG 88947-89110 GT AGG (CCT) AG 89260-89407 GT AGG (CAT) AG 90172-90312 GT AAG (AAA) AG 90450-90524 GT ATG (ATC) AG 90666-90770 AC GAA add_exon() Sorry, pasa_asmbl_20139.p1 88239-88273-initial-1 is invalid. -recovered pasa_asmbl_20139.p1, initial, 88239, 88273 add_exon() Sorry, pasa_asmbl_20139.p1 85628-85796-terminal-3 is invalid. -recovered pasa_asmbl_20139.p1, terminal, 85628, 85796 -recovered pasa_asmbl_20139.p1, terminal, 90666, 90770 -recovered pasa_asmbl_20139.p1, internal, 84320, 84379 -recovered pasa_asmbl_20139.p1, internal, 85628, 85796 -recovered pasa_asmbl_20139.p1, internal, 86072, 86172 -recovered pasa_asmbl_20139.p1, internal, 87812, 87887 -recovered pasa_asmbl_20139.p1, internal, 88239, 88273 -recovered pasa_asmbl_20139.p1, internal, 88464, 88559 -recovered pasa_asmbl_20139.p1, internal, 88947, 89110 -recovered pasa_asmbl_20139.p1, internal, 89260, 89407 -recovered pasa_asmbl_20139.p1, internal, 90172, 90312 -recovered pasa_asmbl_20139.p1, internal, 90450, 90524 Valid prediction for GeneMark_model.76293_t Valid prediction for GeneMark_model.76291_t Valid prediction for GeneMark_model.76280_t Valid prediction for Augustus_model.g29486.t1 Valid prediction for GeneMark_model.76287_t Couldn't classify 44440, 44502 Sorry, prediction pasa_asmbl_20141.p1 fails validation. (ATG) AA 41161-41251 GT AGG (GCC) AG 43207-43428 GT AGG (CTG) AG 43986-44140 GT AGG (GCG) AG 44440-44502 CT ATC -recovered pasa_asmbl_20141.p1, initial, 41161, 41251 -recovered pasa_asmbl_20141.p1, internal, 43207, 43428 -recovered pasa_asmbl_20141.p1, internal, 43986, 44140 Valid prediction for snap_scaffold_18-snap.2189-T1 Valid prediction for GlimmerHMM_glimmerT_44041-T1 Valid prediction for GlimmerHMM_glimmerT_44040-T1 Valid prediction for GeneMark_model.76243_t Valid prediction for GeneMark_model.76295_t Valid prediction for GeneMark_model.76241_t Valid prediction for GeneMark_model.76262_t Valid prediction for GlimmerHMM_glimmerT_44061-T1 Valid prediction for GlimmerHMM_glimmerT_44048-T1 Valid prediction for GlimmerHMM_glimmerT_44067-T1 Valid prediction for GeneMark_model.76259_t Valid prediction for pasa_asmbl_20132.p2 Valid prediction for GeneMark_model.76274_t Valid prediction for snap_scaffold_18-snap.2200-T1 Valid prediction for snap_scaffold_18-snap.2204-T1 Valid prediction for Augustus_model.g29493.t1 Valid prediction for snap_scaffold_18-snap.2186-T1 Valid prediction for HiQ_model.g29500.t1 Valid prediction for snap_scaffold_18-snap.2192-T1 Valid prediction for GeneMark_model.76239_t Couldn't classify 45585, 45633 Sorry, prediction pasa_asmbl_20245.p1 fails validation. (GGA) CA 45585-45633 GT CGG (ACG) AG 45942-46081 GT CGG (GCT) AG 46360-46569 GA AGG -recovered pasa_asmbl_20245.p1, terminal, 46360, 46569 -recovered pasa_asmbl_20245.p1, internal, 45942, 46081 Valid prediction for GlimmerHMM_glimmerT_44058-T1 Valid prediction for snap_scaffold_18-snap.2181-T1 Valid prediction for GeneMark_model.76237_t Valid prediction for GeneMark_model.76276_t Valid prediction for GlimmerHMM_glimmerT_44049-T1 Valid prediction for snap_scaffold_18-snap.2218-T1 Valid prediction for GeneMark_model.76278_t Valid prediction for snap_scaffold_18-snap.2220-T1 Valid prediction for snap_scaffold_18-snap.2214-T1 Valid prediction for snap_scaffold_18-snap.2208-T1 Valid prediction for GlimmerHMM_glimmerT_44063-T1 Valid prediction for GlimmerHMM_glimmerT_44055-T1 Couldn't classify 74726, 74893 Couldn't classify 79020, 79034 Sorry, prediction pasa_asmbl_20140.p1 fails validation. (TTA) AT 74726-74893 GT AGG (AAA) AG 75243-75410 GT GGG (ATA) AG 76149-76260 GT AGG (GCG) AG 76386-76487 GT AGG (GTT) AG 78811-78914 GT AGG (GGT) AG 79020-79034 AC CAA add_exon() Sorry, pasa_asmbl_20140.p1 76149-76260-terminal-3 is invalid. -recovered pasa_asmbl_20140.p1, terminal, 76149, 76260 -recovered pasa_asmbl_20140.p1, internal, 75243, 75410 -recovered pasa_asmbl_20140.p1, internal, 76149, 76260 -recovered pasa_asmbl_20140.p1, internal, 76386, 76487 -recovered pasa_asmbl_20140.p1, internal, 78811, 78914 Valid prediction for snap_scaffold_18-snap.2198-T1 Valid prediction for snap_scaffold_18-snap.2225-T1 Valid prediction for GeneMark_model.76264_t Valid prediction for snap_scaffold_18-snap.2202-T1 Valid prediction for snap_scaffold_18-snap.2193-T1 Valid prediction for CodingQuarry_transcript_23844-T1 Valid prediction for GlimmerHMM_glimmerT_44066-T1 Valid prediction for snap_scaffold_18-snap.2223-T1 Valid prediction for GeneMark_model.76294_t Valid prediction for GeneMark_model.76283_t Valid prediction for snap_scaffold_18-snap.2182-T1 Sorry, intron length (6) is less than minimum required (10) Valid prediction for snap_scaffold_18-snap.2215-T1 Valid prediction for Augustus_model.g29499.t1 Valid prediction for snap_scaffold_18-snap.2205-T1 Valid prediction for GeneMark_model.76266_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 19767, rend_intergenic: 14517 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 25312, rend_intergenic: 19786 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28292, rend_intergenic: 27426 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 29876, rend_intergenic: 28568 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 30249, rend_intergenic: 30108 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 53723, rend_intergenic: 35503 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 65396, rend_intergenic: 56017 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 67314, rend_intergenic: 65590 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 79773, rend_intergenic: 76077 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 97134, rend_intergenic: 79835 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103444, rend_intergenic: 99036 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 108337, rend_intergenic: 108152 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113750, rend_intergenic: 109532 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 122136, rend_intergenic: 116655 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 136291, rend_intergenic: 128272 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 139180, rend_intergenic: 137848 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 144354, rend_intergenic: 140179 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 187847, rend_intergenic: 182428 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 195301, rend_intergenic: 193436 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 205357, rend_intergenic: 196225 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 214418 -exon list size: 867 building trellis 0.1 0.2 0.3 0.5 0.6 0.7 0.8 0.9 1.0 1.2 1.3 1.4 1.5 1.6 1.7 1.8 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.8 2.9 3.0 3.1 3.2 3.3 3.5 3.6 3.7 3.8 3.9 4.0 4.1 4.3 4.4 4.5 4.6 4.7 4.8 4.9 5.1 5.2 5.3 5.4 5.5 5.6 5.8 5.9 6.0 6.1 6.2 6.3 6.4 6.6 6.7 6.8 6.9 7.0 7.1 7.2 7.4 7.5 7.6 7.7 7.8 7.9 8.1 8.2 8.3 8.4 8.5 8.6 8.7 8.9 9.0 9.1 9.2 9.3 9.4 9.6 9.7 9.8 9.9 10.0 10.1 10.2 10.4 10.5 10.6 10.7 10.8 10.9 11.0 11.2 11.3 11.4 11.5 11.6 11.7 11.9 12.0 12.1 12.2 12.3 12.4 12.5 12.7 12.8 12.9 13.0 13.1 13.2 13.3 13.5 13.6 13.7 13.8 13.9 14.0 14.2 14.3 14.4 14.5 14.6 14.7 14.8 15.0 15.1 15.2 15.3 15.4 15.5 15.7 15.8 15.9 16.0 16.1 16.2 16.3 16.5 16.6 16.7 16.8 16.9 17.0 17.1 17.3 17.4 17.5 17.6 17.7 17.8 18.0 18.1 18.2 18.3 18.4 18.5 18.6 18.8 18.9 19.0 19.1 19.2 19.3 19.4 19.6 19.7 19.8 19.9 20.0 20.1 20.3 20.4 20.5 20.6 20.7 20.8 20.9 21.1 21.2 21.3 21.4 21.5 21.6 21.7 21.9 22.0 22.1 22.2 22.3 22.4 22.6 22.7 22.8 22.9 23.0 23.1 23.2 23.4 23.5 23.6 23.7 23.8 23.9 24.1 24.2 24.3 24.4 24.5 24.6 24.7 24.9 25.0 25.1 25.2 25.3 25.4 25.5 25.7 25.8 25.9 26.0 26.1 26.2 26.4 26.5 26.6 26.7 26.8 26.9 27.0 27.2 27.3 27.4 27.5 27.6 27.7 27.8 28.0 28.1 28.2 28.3 28.4 28.5 28.7 28.8 28.9 29.0 29.1 29.2 29.3 29.5 29.6 29.7 29.8 29.9 30.0 30.1 30.3 30.4 30.5 30.6 30.7 30.8 31.0 31.1 31.2 31.3 31.4 31.5 31.6 31.8 31.9 32.0 32.1 32.2 32.3 32.5 32.6 32.7 32.8 32.9 33.0 33.1 33.3 33.4 33.5 33.6 33.7 33.8 33.9 34.1 34.2 34.3 34.4 34.5 34.6 34.8 34.9 35.0 35.1 35.2 35.3 35.4 35.6 35.7 35.8 35.9 36.0 36.1 36.2 36.4 36.5 36.6 36.7 36.8 36.9 37.1 37.2 37.3 37.4 37.5 37.6 37.7 37.9 38.0 38.1 38.2 38.3 38.4 38.6 38.7 38.8 38.9 39.0 39.1 39.2 39.4 39.5 39.6 39.7 39.8 39.9 40.0 40.2 40.3 40.4 40.5 40.6 40.7 40.9 41.0 41.1 41.2 41.3 41.4 41.5 41.7 41.8 41.9 42.0 42.1 42.2 42.3 42.5 42.6 42.7 42.8 42.9 43.0 43.2 43.3 43.4 43.5 43.6 43.7 43.8 44.0 44.1 44.2 44.3 44.4 44.5 44.6 44.8 44.9 45.0 45.1 45.2 45.3 45.5 45.6 45.7 45.8 45.9 46.0 46.1 46.3 46.4 46.5 46.6 46.7 46.8 47.0 47.1 47.2 47.3 47.4 47.5 47.6 47.8 47.9 48.0 48.1 48.2 48.3 48.4 48.6 48.7 48.8 48.9 49.0 49.1 49.3 49.4 49.5 49.6 49.7 49.8 49.9 50.1 50.2 50.3 50.4 50.5 50.6 50.7 50.9 51.0 51.1 51.2 51.3 51.4 51.6 51.7 51.8 51.9 52.0 52.1 52.2 52.4 52.5 52.6 52.7 52.8 52.9 53.0 53.2 53.3 53.4 53.5 53.6 53.7 53.9 54.0 54.1 54.2 54.3 54.4 54.5 54.7 54.8 54.9 55.0 55.1 55.2 55.4 55.5 55.6 55.7 55.8 55.9 56.0 56.2 56.3 56.4 56.5 56.6 56.7 56.8 57.0 57.1 57.2 57.3 57.4 57.5 57.7 57.8 57.9 58.0 58.1 58.2 58.3 58.5 58.6 58.7 58.8 58.9 59.0 59.1 59.3 59.4 59.5 59.6 59.7 59.8 60.0 60.1 60.2 60.3 60.4 60.5 60.6 60.8 60.9 61.0 61.1 61.2 61.3 61.4 61.6 61.7 61.8 61.9 62.0 62.1 62.3 62.4 62.5 62.6 62.7 62.8 62.9 63.1 63.2 63.3 63.4 63.5 63.6 63.8 63.9 64.0 64.1 64.2 64.3 64.4 64.6 64.7 64.8 64.9 65.0 65.1 65.2 65.4 65.5 65.6 65.7 65.8 65.9 66.1 66.2 66.3 66.4 66.5 66.6 66.7 66.9 67.0 67.1 67.2 67.3 67.4 67.5 67.7 67.8 67.9 68.0 68.1 68.2 68.4 68.5 68.6 68.7 68.8 68.9 69.0 69.2 69.3 69.4 69.5 69.6 69.7 69.9 70.0 70.1 70.2 70.3 70.4 70.5 70.7 70.8 70.9 71.0 71.1 71.2 71.3 71.5 71.6 71.7 71.8 71.9 72.0 72.2 72.3 72.4 72.5 72.6 72.7 72.8 73.0 73.1 73.2 73.3 73.4 73.5 73.6 73.8 73.9 74.0 74.1 74.2 74.3 74.5 74.6 74.7 74.8 74.9 75.0 75.1 75.3 75.4 75.5 75.6 75.7 75.8 75.9 76.1 76.2 76.3 76.4 76.5 76.6 76.8 76.9 77.0 77.1 77.2 77.3 77.4 77.6 77.7 77.8 77.9 78.0 78.1 78.3 78.4 78.5 78.6 78.7 78.8 78.9 79.1 79.2 79.3 79.4 79.5 79.6 79.7 79.9 80.0 80.1 80.2 80.3 80.4 80.6 80.7 80.8 80.9 81.0 81.1 81.2 81.4 81.5 81.6 81.7 81.8 81.9 82.0 82.2 82.3 82.4 82.5 82.6 82.7 82.9 83.0 83.1 83.2 83.3 83.4 83.5 83.7 83.8 83.9 84.0 84.1 84.2 84.3 84.5 84.6 84.7 84.8 84.9 85.0 85.2 85.3 85.4 85.5 85.6 85.7 85.8 86.0 86.1 86.2 86.3 86.4 86.5 86.7 86.8 86.9 87.0 87.1 87.2 87.3 87.5 87.6 87.7 87.8 87.9 88.0 88.1 88.3 88.4 88.5 88.6 88.7 88.8 89.0 89.1 89.2 89.3 89.4 89.5 89.6 89.8 89.9 90.0 90.1 90.2 90.3 90.4 90.6 90.7 90.8 90.9 91.0 91.1 91.3 91.4 91.5 91.6 91.7 91.8 91.9 92.1 92.2 92.3 92.4 92.5 92.6 92.8 92.9 93.0 93.1 93.2 93.3 93.4 93.6 93.7 93.8 93.9 94.0 94.1 94.2 94.4 94.5 94.6 94.7 94.8 94.9 95.1 95.2 95.3 95.4 95.5 95.6 95.7 95.9 96.0 96.1 96.2 96.3 96.4 96.5 96.7 96.8 96.9 97.0 97.1 97.2 97.4 97.5 97.6 97.7 97.8 97.9 98.0 98.2 98.3 98.4 98.5 98.6 98.7 98.8 99.0 99.1 99.2 99.3 99.4 99.5 99.7 99.8 99.9 -found 30 predictions from path traversal Error with prediction: snap lend_intergenic: 19767, rend_intergenic: 14517 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 25312, rend_intergenic: 19786 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28292, rend_intergenic: 27426 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 29876, rend_intergenic: 28568 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 30249, rend_intergenic: 30108 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 53723, rend_intergenic: 35503 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 65396, rend_intergenic: 56017 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 67314, rend_intergenic: 65590 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 79773, rend_intergenic: 76077 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 97134, rend_intergenic: 79835 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103444, rend_intergenic: 99036 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 108337, rend_intergenic: 108152 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113750, rend_intergenic: 109532 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 122136, rend_intergenic: 116655 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 136291, rend_intergenic: 128272 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 139180, rend_intergenic: 137848 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 144354, rend_intergenic: 140179 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 187847, rend_intergenic: 182428 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 195301, rend_intergenic: 193436 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 205357, rend_intergenic: 196225 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 20 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 14527 -exon list size: 60 building trellis 1.6 3.2 4.8 6.5 8.1 9.7 11.3 12.9 14.5 16.1 17.7 19.4 21.0 22.6 24.2 25.8 27.4 29.0 30.6 32.3 33.9 35.5 37.1 38.7 40.3 41.9 43.5 45.2 46.8 48.4 50.0 51.6 53.2 54.8 56.5 58.1 59.7 61.3 62.9 64.5 66.1 67.7 69.4 71.0 72.6 74.2 75.8 77.4 79.0 80.6 82.3 83.9 85.5 87.1 88.7 90.3 91.9 93.5 95.2 96.8 98.4 -found 2 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 13146 -exon list size: 58 building trellis 1.7 3.3 5.0 6.7 8.3 10.0 11.7 13.3 15.0 16.7 18.3 20.0 21.7 23.3 25.0 26.7 28.3 30.0 31.7 33.3 35.0 36.7 38.3 40.0 41.7 43.3 45.0 46.7 48.3 50.0 51.7 53.3 55.0 56.7 58.3 60.0 61.7 63.3 65.0 66.7 68.3 70.0 71.7 73.3 75.0 76.7 78.3 80.0 81.7 83.3 85.0 86.7 88.3 90.0 91.7 93.3 95.0 96.7 98.3 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 12747 -exon list size: 57 building trellis 1.7 3.4 5.1 6.8 8.5 10.2 11.9 13.6 15.3 16.9 18.6 20.3 22.0 23.7 25.4 27.1 28.8 30.5 32.2 33.9 35.6 37.3 39.0 40.7 42.4 44.1 45.8 47.5 49.2 50.8 52.5 54.2 55.9 57.6 59.3 61.0 62.7 64.4 66.1 67.8 69.5 71.2 72.9 74.6 76.3 78.0 79.7 81.4 83.1 84.7 86.4 88.1 89.8 91.5 93.2 94.9 96.6 98.3 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support