-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1799

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 82, 169
Couldn't classify 1805, 1843
Sorry, prediction snap_scaffold_1799-snap.1-T1 fails validation.
(GGG)	 AG	82-169	GT	GTG
(GAG)	 AG	1008-1103	GT	AAG
(GGT)	 AG	1805-1843	GT	AGG
-recovered snap_scaffold_1799-snap.1-T1, internal, 82, 169
-recovered snap_scaffold_1799-snap.1-T1, internal, 1008, 1103
-recovered snap_scaffold_1799-snap.1-T1, internal, 1805, 1843

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62833-T1
Valid prediction for snap_scaffold_1799-snap.2-T1
Couldn't classify 15, 140
Sorry, prediction GeneMark_model.109744_t fails validation.
(GAG)	 AG	15-140	GT	AAG
(AGA)	 AG	1021-1087	GT	GGG
(CAC)	 AG	1270-1496	GT	GGG
(GGC)	 AG	1521-1596	CC	AGC
-recovered GeneMark_model.109744_t, terminal, 1521, 1596
-recovered GeneMark_model.109744_t, internal, 15, 140
-recovered GeneMark_model.109744_t, internal, 1021, 1087
-recovered GeneMark_model.109744_t, internal, 1270, 1496

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1843, rend_intergenic: 349  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 1928
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1843, rend_intergenic: 349  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support