-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1798

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 324, 440
Couldn't classify 1346, 1529
Sorry, prediction snap_scaffold_1798-snap.1-T1 fails validation.
(GTG)	 AG	324-440	GT	AGG
(CTC)	 AG	1346-1529	GT	CAG
-recovered snap_scaffold_1798-snap.1-T1, internal, 324, 440
-recovered snap_scaffold_1798-snap.1-T1, internal, 1346, 1529
Couldn't classify 324, 440
Couldn't classify 1360, 1529
Sorry, prediction GeneMark_model.109743_t fails validation.
(GTG)	 AG	324-440	GT	AGG
(GAG)	 AG	752-759	GT	GTG
(AGA)	 AG	981-1001	GT	GAG
(TGA)	 AG	1360-1529	GT	CAG
-recovered GeneMark_model.109743_t, terminal, 981, 1001
-recovered GeneMark_model.109743_t, internal, 324, 440
-recovered GeneMark_model.109743_t, internal, 752, 759
-recovered GeneMark_model.109743_t, internal, 981, 1001
-recovered GeneMark_model.109743_t, internal, 1360, 1529
Couldn't classify 1346, 1529
Sorry, prediction GlimmerHMM_glimmerT_62832-T1 fails validation.
(ATG)	 GC	258-440	GT	AGG
(CTC)	 AG	1346-1529	GT	CAG
-recovered GlimmerHMM_glimmerT_62832-T1, initial, 258, 440
-recovered GlimmerHMM_glimmerT_62832-T1, internal, 1346, 1529
Couldn't classify 324, 440
Couldn't classify 1346, 1529
Sorry, prediction Augustus_model.g41829.t1 fails validation.
(GTG)	 AG	324-440	GT	AGG
(CTC)	 AG	1346-1529	GT	CAG
-recovered Augustus_model.g41829.t1, internal, 324, 440
-recovered Augustus_model.g41829.t1, internal, 1346, 1529

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1502, 1575
Sorry, prediction snap_scaffold_1798-snap.2-T1 fails validation.
(ATG)	 AG	438-608	GT	GAG
(ATG)	 AG	1502-1575	GT	AGG
add_exon() Sorry, snap_scaffold_1798-snap.2-T1 438-608-initial-1 is invalid.
-recovered snap_scaffold_1798-snap.2-T1, initial, 438, 608
add_exon() Sorry, snap_scaffold_1798-snap.2-T1 1502-1575-initial-1 is invalid.
-recovered snap_scaffold_1798-snap.2-T1, initial, 1502, 1575
-recovered snap_scaffold_1798-snap.2-T1, internal, 438, 608
-recovered snap_scaffold_1798-snap.2-T1, internal, 1502, 1575

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1529, rend_intergenic: 354  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 1928
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1529, rend_intergenic: 354  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support