-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1796

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1867, 1893
Sorry, prediction GeneMark_model.109741_t fails validation.
(ATG)	 TG	1343-1350	GT	TGG
(CAT)	 AG	1519-1596	GT	AAG
(GGG)	 AG	1629-1649	GT	GGG
(GAG)	 AG	1672-1746	GT	AGG
(AGG)	 AG	1769-1795	GT	AGG
(AGG)	 AG	1818-1844	GT	AGG
(AGG)	 AG	1867-1893	GT	AGG
-recovered GeneMark_model.109741_t, initial, 1343, 1350
-recovered GeneMark_model.109741_t, internal, 1519, 1596
-recovered GeneMark_model.109741_t, internal, 1629, 1649
-recovered GeneMark_model.109741_t, internal, 1672, 1746
-recovered GeneMark_model.109741_t, internal, 1769, 1795
-recovered GeneMark_model.109741_t, internal, 1818, 1844
-recovered GeneMark_model.109741_t, internal, 1867, 1893
Couldn't classify 386, 584
Sorry, prediction Augustus_model.g41828.t1 fails validation.
(GAG)	 AG	386-584	GT	AGG
(TGT)	 AG	940-1058	CA	AGC
-recovered Augustus_model.g41828.t1, terminal, 940, 1058
-recovered Augustus_model.g41828.t1, internal, 386, 584
Couldn't classify 386, 584
Sorry, prediction snap_scaffold_1796-snap.1-T1 fails validation.
(GAG)	 AG	386-584	GT	AGG
(TGT)	 AG	940-1058	CA	AGC
-recovered snap_scaffold_1796-snap.1-T1, terminal, 940, 1058
-recovered snap_scaffold_1796-snap.1-T1, internal, 386, 584
Couldn't classify 386, 584
Sorry, prediction GeneMark_model.109742_t fails validation.
(GAG)	 AG	386-584	GT	AGG
(TGT)	 AG	940-1058	CA	AGC
-recovered GeneMark_model.109742_t, terminal, 940, 1058
-recovered GeneMark_model.109742_t, internal, 386, 584
Couldn't classify 386, 584
Sorry, prediction GlimmerHMM_glimmerT_62830-T1 fails validation.
(GAG)	 AG	386-584	GT	AGG
(TGT)	 AG	940-1058	CA	AGC
-recovered GlimmerHMM_glimmerT_62830-T1, terminal, 940, 1058
-recovered GlimmerHMM_glimmerT_62830-T1, internal, 386, 584

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1932
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support