-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_179

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106842_t
Valid prediction for snap_scaffold_179-snap.1-T1
Couldn't classify 9104, 9244
Sorry, prediction snap_scaffold_179-snap.3-T1 fails validation.
(ATG)	 TT	6163-6210	GT	AGG
(CAA)	 AG	9104-9244	GT	AAG
-recovered snap_scaffold_179-snap.3-T1, initial, 6163, 6210
-recovered snap_scaffold_179-snap.3-T1, internal, 9104, 9244
Valid prediction for GlimmerHMM_glimmerT_61457-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1243, 1412
Sorry, prediction GeneMark_model.106843_t fails validation.
(ACT)	 AG	1243-1412	GT	TGG
(GCT)	 AG	1574-1729	GT	AGG
(AGC)	 AG	3967-3972	TG	GAT
-recovered GeneMark_model.106843_t, terminal, 3967, 3972
-recovered GeneMark_model.106843_t, internal, 1243, 1412
-recovered GeneMark_model.106843_t, internal, 1574, 1729
Couldn't classify 1243, 1412
Sorry, prediction GlimmerHMM_glimmerT_61458-T1 fails validation.
(ACT)	 AG	1243-1412	GT	TGG
(GCT)	 AG	1574-1729	GT	AGG
(ACC)	 AG	5979-6093	GT	GGG
(GCA)	 AG	9104-9177	GG	GAG
-recovered GlimmerHMM_glimmerT_61458-T1, terminal, 9104, 9177
-recovered GlimmerHMM_glimmerT_61458-T1, internal, 1243, 1412
-recovered GlimmerHMM_glimmerT_61458-T1, internal, 1574, 1729
-recovered GlimmerHMM_glimmerT_61458-T1, internal, 5979, 6093
Couldn't classify 10250, 10322
Sorry, prediction Augustus_model.g40873.t1 fails validation.
(ATG)	 TC	1272-1412	GT	TGG
(GCT)	 AG	1574-1729	GT	AGG
(GGA)	 AG	3648-3714	GT	GGG
(TTA)	 AG	3892-4028	GT	GAG
(ACC)	 AG	5979-6086	GT	AGG
(GTG)	 AG	10250-10322	GT	AGG
-recovered Augustus_model.g40873.t1, initial, 1272, 1412
-recovered Augustus_model.g40873.t1, internal, 1574, 1729
-recovered Augustus_model.g40873.t1, internal, 3648, 3714
-recovered Augustus_model.g40873.t1, internal, 3892, 4028
-recovered Augustus_model.g40873.t1, internal, 5979, 6086
-recovered Augustus_model.g40873.t1, internal, 10250, 10322
Valid prediction for GeneMark_model.106841_t
Couldn't classify 1243, 1412
Couldn't classify 10250, 10322
Sorry, prediction snap_scaffold_179-snap.2-T1 fails validation.
(ACT)	 AG	1243-1412	GT	TGG
(GCT)	 AG	1574-1729	GT	AGG
(GAA)	 AG	5155-5256	GT	GAG
(ACC)	 AG	5979-6086	GT	AGG
(GTG)	 AG	10250-10322	GT	AGG
-recovered snap_scaffold_179-snap.2-T1, internal, 1243, 1412
-recovered snap_scaffold_179-snap.2-T1, internal, 1574, 1729
-recovered snap_scaffold_179-snap.2-T1, internal, 5155, 5256
-recovered snap_scaffold_179-snap.2-T1, internal, 5979, 6086
-recovered snap_scaffold_179-snap.2-T1, internal, 10250, 10322

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5533, rend_intergenic: 191  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9270, rend_intergenic: 6163  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 10512
-exon list size: 29


building trellis

3.2    
6.5    
9.7    
12.9    
16.1    
19.4    
22.6    
25.8    
29.0    
32.3    
35.5    
38.7    
41.9    
45.2    
48.4    
51.6    
54.8    
58.1    
61.3    
64.5    
67.7    
71.0    
74.2    
77.4    
80.6    
83.9    
87.1    
90.3    
93.5    
96.8    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 5533, rend_intergenic: 191  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9270, rend_intergenic: 6163  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support